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The ISME Journal - Table of Contents alert Volume 11 Issue 5

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The ISME Journal


Volume 11, Issue 5 (May 2017)

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Original Articles
Short Communications

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ISMEJ turns 10: tracking rapid progress in microbial ecology

George A Kowalchuk and Mark J Bailey

ISME J 2017 11: 1059-1060; 10.1038/ismej.2017.50

Full Text

Original Articles


Bacteria isolated from lung modulate asthma susceptibility in mice OPEN

Aude Remot, Delphyne Descamps, Marie-Louise Noordine, Abdelhak Boukadiri, Elliot Mathieu, Véronique Robert, Sabine Riffault, Bart Lambrecht, Philippe Langella, Hamida Hammad and Muriel Thomas

ISME J 2017 11: 1061-1074; advance online publication, January 3, 2017; 10.1038/ismej.2016.181

Abstract | Full Text

Sticking together: inter-species aggregation of bacteria isolated from iron snow is controlled by chemical signaling OPEN

Jiro F Mori, Nico Ueberschaar, Shipeng Lu, Rebecca E Cooper, Georg Pohnert and Kirsten Küsel

ISME J 2017 11: 1075-1086; advance online publication, January 31, 2017; 10.1038/ismej.2016.186

Abstract | Full Text

Chemolithotrophic processes in the bacterial communities on the surface of mineral-enriched biochars

Jun Ye, Stephen D Joseph, Mukan Ji, Shaun Nielsen, David R G Mitchell, Scott Donne, Joseph Horvat, Jianli Wang, Paul Munroe and Torsten Thomas

ISME J 2017 11: 1087-1101; advance online publication, February 7, 2017; 10.1038/ismej.2016.187

Abstract | Full Text

New insights into marine group III Euryarchaeota, from dark to light

Jose M Haro-Moreno, Francisco Rodriguez-Valera, Purificación López-García, David Moreira and Ana-Belen Martin-Cuadrado

ISME J 2017 11: 1102-1117; advance online publication, January 13, 2017; 10.1038/ismej.2016.188

Abstract | Full Text

Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches

C S Lazar, B J Baker, K W Seitz and A P Teske

ISME J 2017 11: 1118-1129; advance online publication, January 13, 2017; 10.1038/ismej.2016.189

Abstract | Full Text

An acid-tolerant ammonia-oxidizing γ-proteobacterium from soil

Masahito Hayatsu, Kanako Tago, Ikuo Uchiyama, Atsushi Toyoda, Yong Wang, Yumi Shimomura, Takashi Okubo, Futoshi Kurisu, Yuhei Hirono, Kunihiko Nonaka, Hiroko Akiyama, Takehiko Itoh and Hideto Takami

ISME J 2017 11: 1130-1141; advance online publication, January 10, 2017; 10.1038/ismej.2016.191

Abstract | Full Text

Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system OPEN

Laura A Sauder, Mads Albertsen, Katja Engel, Jasmin Schwarz, Per H Nielsen, Michael Wagner and Josh D Neufeld

ISME J 2017 11: 1142-1157; advance online publication, February 14, 2017; 10.1038/ismej.2016.192

Abstract | Full Text

Microbial community dynamics in Inferno Crater Lake, a thermally fluctuating geothermal spring

Laura Ward, Michael W Taylor, Jean F Power, Bradley J Scott, Ian R McDonald and Matthew B Stott

ISME J 2017 11: 1158-1167; advance online publication, January 10, 2017; 10.1038/ismej.2016.193

Abstract | Full Text

The evolution of no-cost resistance at sub-MIC concentrations of streptomycin in Streptomyces coelicolor

Sanne Westhoff, Tim Marijn van Leeuwe, Omar Qachach, Zheren Zhang, Gilles Philippus van Wezel and Daniel Eric Rozen

ISME J 2017 11: 1168-1178; advance online publication, January 17, 2017; 10.1038/ismej.2016.194

Abstract | Full Text

Cheating fosters species co-existence in well-mixed bacterial communities

Anne Leinweber, R Fredrik Inglis and Rolf Kümmerli

ISME J 2017 11: 1179-1188; advance online publication, January 6, 2017; 10.1038/ismej.2016.195

Abstract | Full Text

A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements

Fanny E Hartmann, Andrea Sánchez-Vallet, Bruce A McDonald and Daniel Croll

ISME J 2017 11: 1189-1204; advance online publication, January 24, 2017; 10.1038/ismej.2016.196

Abstract | Full Text

Syntrophic linkage between predatory Carpediemonas and specific prokaryotic populations OPEN

Emmo Hamann, Halina E Tegetmeyer, Dietmar Riedel, Sten Littmann, Soeren Ahmerkamp, Jianwei Chen, Philipp F Hach and Marc Strous

ISME J 2017 11: 1205-1217; advance online publication, February 17, 2017; 10.1038/ismej.2016.197

Abstract | Full Text

On the ecosystemic network of saliva in healthy young adults OPEN

Egija Zaura, Bernd W Brandt, Andrei Prodan, Maarten Joost Teixeira de Mattos, Sultan Imangaliyev, Jolanda Kool, Mark J Buijs, Ferry LPW Jagers, Nienke L Hennequin-Hoenderdos, Dagmar E Slot, Elena A Nicu, Maxim D Lagerweij, Marleen M Janus, Marcela M Fernandez-Gutierrez, Evgeni Levin, Bastiaan P Krom, Henk S Brand, Enno CI Veerman, Michiel Kleerebezem, Bruno G Loos, G A van der Weijden, Wim Crielaard and Bart JF Keijser

ISME J 2017 11: 1218-1231; advance online publication, January 10, 2017; 10.1038/ismej.2016.199

Abstract | Full Text

Genomic changes associated with the evolutionary transition of an insect gut symbiont into a blood-borne pathogen OPEN

Francisca HID Segers, Lucie Kešnerová, Michael Kosoy and Philipp Engel

ISME J 2017 11: 1232-1244; advance online publication, February 24, 2017; 10.1038/ismej.2016.201

Abstract | Full Text

Discovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats OPEN

Dimitry Y Sorokin, Enzo Messina, Francesco Smedile, Pawel Roman, Jaap S Sinninghe Damsté, Sergio Ciordia, Maria Carmen Mena, Manuel Ferrer, Peter N Golyshin, Ilya V Kublanov, Nazar I Samarov, Stepan V Toshchakov, Violetta La Cono and Michail M Yakimov

ISME J 2017 11: 1245-1260; advance online publication, January 20, 2017; 10.1038/ismej.2016.203

Abstract | Full Text

Archaea and bacteria mediate the effects of native species root loss on fungi during plant invasion

Steven D Mamet, Eric G Lamb, Candace L Piper, Tristrom Winsley and Steven D Siciliano

ISME J 2017 11: 1261-1275; advance online publication, January 31, 2017; 10.1038/ismej.2016.205

Abstract | Full Text

Short Communications


Genomic repertoire of the Woeseiaceae/JTB255, cosmopolitan and abundant core members of microbial communities in marine sediments

Marc Mußmann, Petra Pjevac, Karen Krüger and Stefan Dyksma

ISME J 2017 11: 1276-1281; advance online publication, January 6, 2017; 10.1038/ismej.2016.185

Abstract | Full Text

Single-cell transcriptomics of small microbial eukaryotes: limitations and potential

Zhenfeng Liu, Sarah K Hu, Victoria Campbell, Avery O Tatters, Karla B Heidelberg and David A Caron

ISME J 2017 11: 1282-1285; advance online publication, January 6, 2017; 10.1038/ismej.2016.190

Abstract | Full Text

Salivary mucins promote the coexistence of competing oral bacterial species

Erica Shapiro Frenkel and Katharina Ribbeck

ISME J 2017 11: 1286-1290; advance online publication, January 24, 2017; 10.1038/ismej.2016.200

Abstract | Full Text

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