Friday, April 17, 2015

Nature Chemical Biology Contents: May 2015, Volume 11 No 5 pp 301 - 361

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Nature Chemical Biology

TABLE OF CONTENTS

May 2015 Volume 11, Issue 5

Editorial
Correspondence
Research Highlights
News and Views
Perspective
Brief Communication
Articles
Addendum
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Editorial

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Structures under scrutiny   p301
doi:10.1038/nchembio.1808
Structural biology advances have democratized access to biomolecular snapshots, but high standards must be maintained to ensure their utility.

Correspondence

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Carbohydrate anomalies in the PDB   p303
Jon Agirre, Gideon Davies, Keith Wilson and Kevin Cowtan
doi:10.1038/nchembio.1798

Research Highlights

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Structural biology: A racemate to the rescue | Metabolic regulation: Go fish | Neuroscience: An epileptic target | Riboswitches: Manganese management | Cell biology: Not the same | Wnt signaling: Trimming the fat

News and Views

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Bioconjugation: How to pick a single amine?   pp306 - 307
Floris P J T Rutjes
doi:10.1038/nchembio.1791
Single-step site-specific labeling of native proteins is one of the holy grails in the chemical biology field. 2-Pyridinecarboxyaldehyde derivatives are shown to react selectively at the N terminus of proteins to form stable conjugates, irrespective of the nature of the N-terminal amino acid, enabling the straightforward introduction of useful functional groups into a wide array of proteins.

See also: Article by MacDonald et al.

Translation: An O-GlcNAc stamp of approval   pp307 - 308
Evan T Powers
doi:10.1038/nchembio.1777
Cytosolic proteins can be modified cotranslationally by the installation of O-GlcNAc groups onto serine and threonine residues. This modification suppresses cotranslational ubiquitination and stabilizes proteins against proteasomal degradation.

See also: Article by Zhu et al.

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Perspective

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Toward spinning artificial spider silk   pp309 - 315
Anna Rising and Jan Johansson
doi:10.1038/nchembio.1789



Spider silks have enormous potential as strong yet flexible biomaterials, but obtaining artificial silk polymers has proven challenging. Recent advances in our understanding of natural silk processing may inform techniques for silk production.

Brief Communication

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Small molecule–triggered Cas9 protein with improved genome-editing specificity   pp316 - 318
Kevin M Davis, Vikram Pattanayak, David B Thompson, John A Zuris and David R Liu
doi:10.1038/nchembio.1793



Post-translational regulation of Cas9 activity may improve the specificity of genomic targeting. A modified version of Cas9 with an insertion of a small molecule–regulated intein allows temporal control of Cas9 activity and reduces off-target activity.

Articles

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O-GlcNAc occurs cotranslationally to stabilize nascent polypeptide chains   pp319 - 325
Yanping Zhu, Ta-Wei Liu, Samy Cecioni, Razieh Eskandari, Wesley F Zandberg et al.
doi:10.1038/nchembio.1774



O-GlcNAcylation is a known post-translational modification, but analysis of nascent proteins now demonstrates that it also occurs during translation, preventing proteolytic degradation of modified proteins by blocking ubiquitination.
Chemical compounds
See also: News and Views by Powers

One-step site-specific modification of native proteins with 2-pyridinecarboxyaldehydes   pp326 - 331
James I MacDonald, Henrik K Munch, Troy Moore and Matthew B Francis
doi:10.1038/nchembio.1792



Bioconjugation methods enable a variety of applications, but it remains difficult to modify many proteins in a single location with a single functional group. A serendipitous discovery of aldehyde reactivity now leads to reagents for the selective labeling of protein N termini under mild conditions.
Chemical compounds
See also: News and Views by Rutjes

Monitoring methionine sulfoxide with stereospecific mechanism-based fluorescent sensors   pp332 - 338
Lionel Tarrago, Zalán Péterfi, Byung Cheon Lee, Thomas Michel and Vadim N Gladyshev
doi:10.1038/nchembio.1787



The lack of existing tools has made it difficult to detect and quantify methionine sulfoxide in cells. The introduction of the MetSOx and MetROx fluorescent sensors allows detection of stereospecific forms of methionine sulfoxide in cells.

Impeding the interaction between Nur77 and p38 reduces LPS-induced inflammation   pp339 - 346
Li Li, Yuan Liu, Hang-zi Chen, Feng-wei Li, Jian-feng Wu et al.
doi:10.1038/nchembio.1788



The orphan nuclear receptor Nur77 blocks inflammation through inhibition of p65 DNA binding and is suppressed by p38α-mediated phosphorylation. A small-molecule compound, PDNPA, disrupts p38α-Nur77 interactions and alleviates mouse models of sepsis.

siRNA screen identifies QPCT as a druggable target for Huntington's disease   pp347 - 354
Maria Jimenez-Sanchez, Wun Lam, Michael Hannus, Birte Sönnichsen, Sara Imarisio et al.
doi:10.1038/nchembio.1790



An siRNA screen for genes that suppress mutant huntingtin toxicity in both mammalian cells and Drosophila identifies glutaminyl cyclase (QPCT). Newly generated small-molecule inhibitors further identify QPCT as a druggable target for Huntington′s disease.
Chemical compounds

A pentose bisphosphate pathway for nucleoside degradation in Archaea   pp355 - 360
Riku Aono, Takaaki Sato, Tadayuki Imanaka and Haruyuki Atomi
doi:10.1038/nchembio.1786



Genetic, biochemical and bioinformatic data define a pathway in Archaea that links the ribose moieties of nucleosides to central carbon metabolism, substituting for the classical pentose phosphate pathway found in Bacteria and Eukarya.

Addendum

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Addendum: Interception of teicoplanin oxidation intermediates yields new antimicrobial scaffolds   p361
Yu-Chen Liu, Yi-Shan Li, Syue-Yi Lyu, Li-Jen Hsu, Yu-Hou Chen et al.
doi:10.1038/nchembio0515-361

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1 comment:

creative peptides said...

Bioconjugation is a chemical strategy to form a stable covalent link between two molecules, at least one of which is a biomolecule. The field of bioconjugation has had a considerable impact on academic research, Bioconjugation