Scientific Reports Biology Table of Contents e-alert: 3 April 2018

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03 April 2018       •Visit Scientific Reports •Submit your manuscript to Scientific Reports     Welcome to your Table of Contents e-alert for Scientific Reports           Biological Sciences               Response analysis of host Spodoptera exigua larvae to infection by Heliothis virescens ascovirus 3h (HvAV-3h) via transcriptome ▶     Huan Yu, Zi-Qi Li, Lei He et al.             High-resolution GPS tracking reveals sex differences in migratory behaviour and stopover habitat use in the Lesser Black-backed Gull Larus fuscus ▶     Jan M. Baert, Eric W. M. Stienen, Brigitte C. Heylen et al.             Increasing prosthetic foot energy return affects whole-body mechanics during walking on level ground and slopes ▶     W. Lee Childers, Kota Z. Takahashi             Relationship between the morphology of the foveal avascular zone, retinal structure, and macular circulation in patients with diabetes mellitus ▶     Nathan M. Bates, Jing Tian, William E. Smiddy et al.             Recurrence of task-related electroencephalographic activity during post-training quiet rest and sleep ▶     Michael Murphy, Robert Stickgold, Mittie Elaine Parr et al.             Real-time distribution of pelagic fish: combining hydroacoustics, GIS and spatial modelling at a fine spatial scale ▶     Milan Muška, Michal Tušer, Jaroslava Frouzová et al.             A role for the gibberellin pathway in biochar-mediated growth promotion ▶     Elizabeth French, Anjali S. Iyer-Pascuzzi             Multilocus genetic profile in dopaminergic pathway modulates the striatum and working memory ▶     Chao Wang, Bing Liu, Xiaolong Zhang et al.             Using human brain activity to guide machine learning ▶     Ruth C. Fong, Walter J. Scheirer, David D. Cox             Improved efficiency of in situ protein analysis by proximity ligation using UnFold probes ▶     Axel Klaesson, Karin Grannas, Tonge Ebai et al.             No perceptual prioritization of non-nociceptive vibrotactile and visual stimuli presented on a sensitized body part ▶     D. M. Torta, L. Filbrich, E. N. Van Den Broeke et al.             Evaluation of Screened Lignin-degrading Fungi for the Biological Pretreatment of Corn Stover ▶     Yingjie Su, Xiaoxiao Yu, Yang Sun et al.             Direct antiviral properties of TLR ligands against HBV replication in immune-competent hepatocytes ▶     Julie Lucifora, Marc Bonnin, Ludovic Aillot et al.             Examination of Csr regulatory circuitry using epistasis analysis with RNA-seq (Epi-seq) confirms that CsrD affects gene expression via CsrA, CsrB and CsrC ▶     Anastasia H. Potts, Yuanyuan Leng, Paul Babitzke et al.             Nitrogen uptake kinetics and saltmarsh plant responses to global change ▶     Grace M. Cott, Joshua S. Caplan, Thomas J. Mozdzer             Interbrain cortical synchronization encodes multiple aspects of social interactions in monkey pairs ▶     Po-He Tseng, Sankaranarayani Rajangam, Gary Lehew et al.             Comprehensive characterization of glutamine synthetase-mediated selection for the establishment of recombinant CHO cells producing monoclonal antibodies ▶     Soo Min Noh, Seunghyeon Shin, Gyun Min Lee             High fat diet alters Drosophila melanogaster sexual behavior and traits: decreased attractiveness and changes in pheromone profiles ▶     Janna N. Schultzhaus, Chloe J. Bennett, Hina Iftikhar et al.             A new artificial diet for western corn rootworm larvae is compatible with and detects resistance to all current Bt toxins ▶     Dalton C. Ludwick, Lisa N. Meihls, Man P. Huynh et al.             Two-dimensional analysis provides molecular insight into flower scent of Lilium ‘Siberia’ ▶     Shaochuan Shi, Guangyou Duan, Dandan Li et al.             Src signaling in a low-complexity unicellular kinome ▶     Hiroshi Suga, W. Todd Miller             Fungal spore diversity reflects substrate-specific deposition challenges ▶     Sara Calhim, Panu Halme, Jens H. Petersen et al.             3.4 million real-world learning management system logins reveal the majority of students experience social jet lag correlated with decreased performance ▶     Benjamin L. Smarr, Aaron E. Schirmer             The secretome from bovine mammosphere-derived cells (MDC) promotes angiogenesis, epithelial cell migration, and contains factors associated with defense and immunity ▶     Melissa M. Ledet, Amy K. Vasquez, Gat Rauner et al.             Application of biosurfactant from Bacillus subtilis C9 for controlling cladoceran grazers in algal cultivation systems ▶     Jin-Ho Yun, Dae-Hyun Cho, Bongsoo Lee et al.             The mitochondrial outer-membrane location of the EXD2 exonuclease contradicts its direct role in nuclear DNA repair ▶     Fenna Hensen, Amandine Moretton, Selma van Esveld et al.             Identification of The Aberrantly Expressed LncRNAs in Hepatocellular Carcinoma: A Bioinformatics Analysis Based on RNA-sequencing ▶     Hao-Tian Liao, Ji-Wei Huang, Tian Lan et al.             Collaborative hierarchy maintains cooperation in asymmetric games ▶     Alberto Antonioni, María Pereda, Katherine A. Cronin et al.             Recruitment kinetics of the homologous recombination pathway in procyclic forms of Trypanosoma brucei after ionizing radiation treatment ▶     Paula Andrea Marin, Marcelo Santos da Silva, Raphael Souza Pavani et al.             Neurons in the Pigeon Nidopallium Caudolaterale Display Value-Related Activity ▶     Madeline Dykes, Aylin Klarer, Blake Porter et al.             Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection ▶     Niladri Bhusan Pati, Swapnil Prakash Doijad, Tilman Schultze et al.             Interaction of Glycolipids with the Macrophage Surface Receptor Mincle – a Systematic Molecular Dynamics Study ▶     Christian A. Söldner, Anselm H. C. Horn, Heinrich Sticht             Predicting affective valence using cortical hemodynamic signals ▶     Lucas R. Trambaiolli, Claudinei E. Biazoli, André M. Cravo et al.             Immunogenicity and Protection Against Influenza H7N3 in Mice by Modified Vaccinia Virus Ankara Vectors Expressing Influenza Virus Hemagglutinin or Neuraminidase ▶     Clement A. Meseda, Vajini Atukorale, Jackeline Soto et al.             Hidden genomic MHC disparity between HLA-matched sibling pairs in hematopoietic stem cell transplantation ▶     Satu Koskela, Jarmo Ritari, Kati Hyvärinen et al.             Outer membrane vesicles from β-lactam-resistant Escherichia coli enable the survival of β-lactam-susceptible E. coli in the presence of β-lactam antibiotics ▶     Si Won Kim, Seong Bin Park, Se Pyeong Im et al.             Functional cyclophilin D moderates platelet adhesion, but enhances the lytic resistance of fibrin ▶     Imre Varjú, Veronika Judit Farkas, László Kőhidai et al.             The Notch inhibitor cowanin accelerates nicastrin degradation ▶     Midori A. Arai, Ryuta Akamine, Anna Tsuchiya et al.             An advanced human in vitro co-culture model for translocation studies across the placental barrier ▶     Leonie Aengenheister, Kerda Keevend, Carina Muoth et al.             SIRT6 facilitates directional telomere movement upon oxidative damage ▶     Ying Gao, Jun Tan, Jingyi Jin et al.             Environmental complexity buffers against stress-induced negative judgement bias in female chickens ▶     Josefina Zidar, Irene Campderrich, Emelie Jansson et al.             Tlr1612 is the major repressor of cell aggregation in the light-color-dependent c-di-GMP signaling network of Thermosynechococcus vulcanus ▶     Gen Enomoto, Yukiko Okuda, Masahiko Ikeuchi             A globally-distributed alien invasive species poses risks to United States imperiled species ▶     Meredith L. McClure, Christopher L. Burdett, Matthew L. Farnsworth et al.             Cementoin–SLPI fusion protein binds to human monocytes and epithelial cells and shows higher biological activity than SLPI ▶     Paulo C. Maffía, Diego Guerrieri, Ximena Villalonga et al.             Latitudinal trends in human primary activities: characterizing the winter day as a synchronizer ▶     José María Martín-Olalla             Profiles of miRNA Isoforms and tRNA Fragments in Prostate Cancer ▶     Rogan G. Magee, Aristeidis G. Telonis, Phillipe Loher et al.             Identification and DNA annotation of a plasmid isolated from Chromobacterium violaceum ▶     Daniel C. Lima, Lena K. Nyberg, Fredrik Westerlund et al.             The Cish SH2 domain is essential for PLC-γ1 regulation in TCR stimulated CD8+ T cells ▶     Geoffrey Guittard, Ana Dios-Esponera, Douglas C. Palmer et al.             Sample-Index Misassignment Impacts Tumour Exome Sequencing ▶     Daniel Vodák, Susanne Lorenz, Sigve Nakken et al.             Case-control analysis of LRRK2 protective variants in Essential Tremor ▶     Adeline S. L. Ng, Ebonne Y. L. Ng, Yi Jayne Tan et al.             Elucidation of the bacterial communities associated with the harmful microalgae Alexandrium tamarense and Cochlodinium polykrikoides using nanopore sequencing ▶     HyeonSeok Shin, Eunju Lee, Jongoh Shin et al.             Pigmentation pattern and developmental constraints: flight muscle attachment sites delimit the thoracic trident of Drosophila melanogaster ▶     Jean-Michel Gibert, Emmanuèle Mouchel-Vielh, Frédérique Peronnet             First insights of peptidoglycan amidation in Gram-positive bacteria - the high-resolution crystal structure of Staphylococcus aureus glutamine amidotransferase GatD ▶     Francisco Leisico, Diana V. Vieira, Teresa A. Figueiredo et al.             Cold Atmospheric Plasma Induces ATP-Dependent Endocytosis of Nanoparticles and Synergistic U373MG Cancer Cell Death ▶     Zhonglei He, Kangze Liu, Eline Manaloto et al.             A Lethal Fungus Infects the Chinese White Wax Scale Insect and Causes Dramatic Changes in the Host Microbiota ▶     Tao Sun, Xue-Qing Wang, Zun-Ling Zhao et al.             Computer simulation study of early bacterial biofilm development ▶     Rafael D. Acemel, Fernando Govantes, Alejandro Cuetos             A new cell-laden 3D Alginate-Matrigel hydrogel resembles human breast cancer cell malignant morphology, spread and invasion capability observed “in vivo” ▶     Marta Cavo, Marco Caria, Ilaria Pulsoni et al.             Metabolomic approach for a rapid identification of natural products with cytotoxic activity against human colorectal cancer cells ▶     Vittoria Graziani, Monica Scognamiglio, Valentina Belli et al.             Structural insights into the RNA methyltransferase domain of METTL16 ▶     Agnieszka Ruszkowska, Milosz Ruszkowski, Zbigniew Dauter et al.             CD4+ and CD8+ T Cells Exert Regulatory Properties During Experimental Acute Aristolochic Acid Nephropathy ▶     Thomas Baudoux, Cécile Husson, Eric De Prez et al.             Illusory occlusion affects stereoscopic depth perception ▶     Zhimin Chen, Rachel N. Denison, David Whitney et al.             Epigenetic Transgenerational Inheritance of Altered Sperm Histone Retention Sites ▶     Millissia Ben Maamar, Ingrid Sadler-Riggleman, Daniel Beck et al.             Bacterial diversity and community structure in the rhizosphere of four Ferula species ▶     Xiuling Wang, Zhongke Wang, Ping Jiang et al.             Characterization of Split Fluorescent Protein Variants and Quantitative Analyses of Their Self-Assembly Process ▶     Tuğba Köker, Anthony Fernandez, Fabien Pinaud             Chronic kidney disease induces a systemic microangiopathy, tissue hypoxia and dysfunctional angiogenesis ▶     Hans-Ulrich Prommer, Johannes Maurer, Karoline von Websky et al.             Mutations in the CDS and promoter of BjuA07.CLV1 cause a multilocular trait in Brassica juncea ▶     Lu Xiao, Xin Li, Fei Liu et al.             Non-invasive detection of severe neutropenia in chemotherapy patients by optical imaging of nailfold microcirculation ▶     Aurélien Bourquard, Alberto Pablo-Trinidad, Ian Butterworth et al.             Characteristics of the fads2 gene promoter in marine teleost Epinephelus coioides and role of Sp1-binding site in determining promoter activity ▶     Dizhi Xie, Zhixiang Fu, Shuqi Wang et al.             Attenuated Notch signaling in schizophrenia and bipolar disorder ▶     Eva Z. Hoseth, Florian Krull, Ingrid Dieset et al.             Caffeine Augments Anesthesia Neurotoxicity in the Fetal Macaque Brain ▶     Kevin K. Noguchi, Stephen A. Johnson, Francesca M. Manzella et al.             Differences in cognitive functions between cytomegalovirus-infected and cytomegalovirus-free university students: a case control study ▶     Veronika Chvátalová, Blanka Šebánková, Hana Hrbáčková et al.             Automated brightfield morphometry of 3D organoid populations by OrganoSeg ▶     Michael A. Borten, Sameer S. Bajikar, Nobuo Sasaki et al.             Reduced Translocation of Glyphosate and Dicamba in Combination Contributes to Poor Control of Kochia scoparia: Evidence of Herbicide Antagonism ▶     Junjun Ou, Curtis R. Thompson, Phillip W. Stahlman et al.             Cross-talk between primary osteocytes and bone marrow macrophages for osteoclastogenesis upon collagen treatment ▶     Jeevithan Elango, Christelle Sanchez, José Eduardo Maté Sánchez de Val et al.             Mechanism of translation control of the alternative Drosophila melanogaster Voltage Dependent Anion-selective Channel 1 mRNAs ▶     L. Leggio, F. Guarino, A. Magrì et al.             Dexras1 is a homeostatic regulator of exercise-dependent proliferation and cell survival in the hippocampal neurogenic niche ▶     Pascale Bouchard-Cannon, Christopher Lowden, Dennison Trinh et al.             Vitamin C promotes apoptosis in breast cancer cells by increasing TRAIL expression ▶     David W. Sant, Sushmita Mustafi, Christopher B. Gustafson et al.             Effect of live yeast Saccharomyces cerevisiae (Actisaf Sc 47) supplementation on the performance and hindgut microbiota composition of weanling pigs ▶     T. G. Kiros, H. Derakhshani, E. Pinloche et al.                 • Careers & Jobs           naturejobs.com Science jobs of the week       Team Leader     RIKEN BioResource Center (BRC)            Multiple Faculty Positions     UT Health San Antonio            PhD Student (f / m)     Universtätsklinikum Münster            Technical Assistants (m / f)     CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences            Postdoctoral Associate     University of Florida Department of Pediatrics            Postdoctoral Fellow     National Institute of Arthritis and Musculoskeletal and Skin Diseases            Post-Doc Research Scientist     Columbia University Medical Center            Research Associate / Assistant     University of Cambridge            Postdoctoral candidate (m / f)     Helmholtz Zentrum München - German Research Center for Environmental Health - HMGU - 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