Wednesday, April 18, 2018

Nature Chemical Biology Contents: May 2018, Volume 14 No 5

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TABLE OF CONTENTS

May 2018 Volume 14, Issue 5

Research Highlights
News & Views
Perspectives
Brief Communications
Articles
 
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Research Highlights

 

Spotting the signal    p413
Caitlin Deane
doi:10.1038/s41589-018-0047-y

The peptide D-list    p413
Mirella Bucci
doi:10.1038/s41589-018-0049-9

Structure in sequence    p413
Yiyun Song
doi:10.1038/s41589-018-0050-3

Fueled by light    p413
Grant Miura
doi:10.1038/s41589-018-0048-x

News & Views

 

TAGing for destruction    pp414 - 415
Aisha Yesbolatova & Masato T. Kanemaki
doi:10.1038/s41589-018-0024-5

Understanding the Pro/N-end rule pathway    pp415 - 416
David A. Dougan & Alexander Varshavsky
doi:10.1038/s41589-018-0045-0

Perspectives

 

Designing macrocyclic disulfide-rich peptides for biotechnological applications    pp417 - 427
Conan K. Wang & David J. Craik
doi:10.1038/s41589-018-0039-y

Through molecular grafting, cyclic disulfide-rich peptides can be used as scaffolds to improve the stability, rigidity, and cellular uptake of bioactive peptides, although a number of factors should be considered when designing such grafted peptides.

 

 

Brief Communications

 

Structural basis for backbone N-methylation by an interrupted adenylation domain    pp428 - 430
Shogo Mori, Allan H. Pang, Taylor A. Lundy, Atefeh Garzan, Oleg V. Tsodikov et al.
doi:10.1038/s41589-018-0014-7

The crystal structure of a methyltransferase domain embedded within an interrupted adenylation domain provides insight into how a nonribosomal peptide synthetase N-methylates amino acid precursors for their incorporation into the peptide product.

 

 

Articles

 

The dTAG system for immediate and target-specific protein degradation    pp431 - 441
Behnam Nabet, Justin M. Roberts, Dennis L. Buckley, Joshiawa Paulk, Shiva Dastjerdi et al.
doi:10.1038/s41589-018-0021-8

The dTAG system pairs potent heterobifunctional degraders and extensible tagging strategies to achieve immediate and reversible degradation of divergent proteins, facilitating biological investigation and drug target validation in cells and in mice.

 

 

Biosynthesis of redox-active metabolites in response to iron deficiency in plants    pp442 - 450
Jakub Rajniak, Ricardo F. H. Giehl, Evelyn Chang, Irene Murgia, Nicolaus von Wirén et al.
doi:10.1038/s41589-018-0019-2

The biosynthesis and secretion of redox-active coumarins sideretin and fraxetin in Arabidopsis thaliana enables the plant to acquire iron under nutrient-limited conditions and provides a blueprint for the use of related compounds in other eudicots.

 

 

Discovery of enzymes for toluene synthesis from anoxic microbial communities    pp451 - 457
Harry R. Beller, Andria V. Rodrigues, Kamrun Zargar, Yu-Wei Wu, Avneesh K. Saini et al.
doi:10.1038/s41589-018-0017-4

The source of biological toluene production in diverse anoxic microbial communities is a glycyl radical enzyme that catalyzes phenylacetate decarboxylation (PhdB), and its cognate activating radical S-adenosylmethionine enzyme (PhdA).

 

 

Regulation of apoptosis by an intrinsically disordered region of Bcl-xL    pp458 - 465
Ariele Viacava Follis, Fabien Llambi, Halime Kalkavan, Yong Yao, Aaron H. Phillips et al.
doi:10.1038/s41589-018-0011-x

Post-translational modification of residues in an intrinsically disordered region of Bcl-XL promotes interactions with its folded core and allosterically reduces affinity for proapoptotic BH3-domain-containing proteins, resulting in apoptosis.

 

 

Molecular basis of GID4-mediated recognition of degrons for the Pro/N-end rule pathway    pp466 - 473
Cheng Dong, Heng Zhang, Li Li, Wolfram Tempel, Peter Loppnau et al.
doi:10.1038/s41589-018-0036-1

Crystal structures of a subunit of the ubiquitin ligase complex serving the N-end rule pathway of degrons marked by proline define a degron recognition mechanism and selection criteria for substrates.

 

 

The structural organization of substrate loading in iterative polyketide synthases    pp474 - 479
Dominik A. Herbst, Callie R. Huitt-Roehl, Roman P. Jakob, Jacob M. Kravetz, Philip A. Storm et al.
doi:10.1038/s41589-018-0026-3

The crystal structure and cryo-electron microscopy of the loading/condensing region of a nonreducing polyketide synthase reveals the insertion of a starter-unit acyltransferase into the condensing region and an asymmetrical post-loading state.

 

 

Ligand-receptor co-evolution shaped the jasmonate pathway in land plants    pp480 - 488
Isabel Monte, Sakiko Ishida, Angel M. Zamarreño, Mats Hamberg, José M. Franco-Zorrilla et al.
doi:10.1038/s41589-018-0033-4

The jasmonoyl-isoleucine (JA-Ile) receptor COI1 is functionally conserved between the bryophyte Marchantia polymopha and the eudicot Arabidopsis thaliana, with two isomers of the JA-Ile precursor dinor-OPDA acting as the ligand for Marchantia COI1.

 

 

Unfolding of a ClC chloride transporter retains memory of its evolutionary history    pp489 - 496
Duyoung Min, Robert E. Jefferson, Yifei Qi, Jing Yang Wang, Mark A. Arbing et al.
doi:10.1038/s41589-018-0025-4

A single-molecule forced unfolding of E. coli chloride transporter ClC-ec1 shows that the N- and C-terminal halves of the protein unfold independently, with exposed polar surfaces stabilized by membrane lipid head groups and water.

 

 

Super-long single-molecule tracking reveals dynamic-anchorage-induced integrin function    pp497 - 506
Taka A. Tsunoyama, Yusuke Watanabe, Junri Goto, Kazuma Naito, Rinshi S. Kasai et al.
doi:10.1038/s41589-018-0032-5

Dissolved oxygen and a reducing-plus-oxidizing system suppress photobleaching and photoblinking in single-molecule tracking experiments, allowing long recordings of CD47 and integrin that showed temporary immobilization within focal adhesions.

 

 

FINO2 initiates ferroptosis through GPX4 inactivation and iron oxidation    pp507 - 515
Michael M. Gaschler, Alexander A. Andia, Hengrui Liu, Joleen M. Csuka, Brisa Hurlocker et al.
doi:10.1038/s41589-018-0031-6

FINO2 is a small molecule that requires the endoperoxide moiety and hydroxyl group to promote ferroptosis through indirect inhibition of GPX4 enzymatic function and direct oxidation of iron, resulting in increased lipid peroxidation.

 

 

Profiling and genetic control of the murine immunoglobulin G glycome    pp516 - 524
Jasminka Krištic, Olga O. Zaytseva, Ramesh Ram, Quang Nguyen, Mislav Novokmet et al.
doi:10.1038/s41589-018-0034-3

Comprehensive glycome profiling of immunoglobulin G (IgG) in 95 strains of mice from the Collaborative Cross genetics resource reveals the extent and variability of IgG glycosylation in vivo.

 

 

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