Thursday, March 22, 2018

Nature contents: 22 March 2018

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  journal cover  
Nature Volume 555 Issue 7697
 
This Week  
 
 
Editorials  
 
 
 
Fourier’s transformational thinking
The mathematics of Joseph Fourier, born 250 years ago this week, shows the value of intellectual boldness.
How to get public engagement right
Dialogue with the public requires a nuanced approach and a willingness to accept uncomfortable truths.
Asymmetry symposium unites economists, physicists and artists
Transdisciplinary programme explores the pervasive presence of symmetry violations.
 
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World View  
 
 
 
Let democracy rule nuclear energy
In South Korea, hundreds ofwell-informed citizens voted on behalf of their country — a technique that should be used more widely, says Ji-Bum Chung.
 
Seven Days  
 
 
 
Spy-poison probe, white rhino and Stephen Hawking — the week in science
The week in science: 16–22 March 2018.
Research Highlights  
 
 
 
This issue's Research Highlights
Selections from the scientific literature.
 
 
 
Latest highlight: Nanoporous materials: A universal synthesis
In the spotlight: Creating a world-leading materials science center that transcends borders
 
 
 
News in Focus
 
Deadly Lassa-fever outbreak tests Nigeria's revamped health agency
Reforms put in place after Ebola epidemic in West Africa have built Nigeria's capacity to diagnose diseases and track their spread.
Amy Maxmen
  The undercover academic keeping tabs on ‘predatory’ publishing
Blacklists that warn against questionable publishers are in demand.
Dalmeet Singh Chawla
Science mourns Stephen Hawking’s death
Physicist and icon of science dies aged 76.
Davide Castelvecchi
  Advances in human behaviour came surprisingly early in Stone Age
Excavations in Kenya suggest improvements in stone tools and other human changes are linked to variations in climate.
Jeff Tollefson
Chinese leaders create science mega-ministry
Overhaul prompts fears of an erosion in funding for basic science.
David Cyranoski
   
Features  
 
 
 
How human embryonic stem cells sparked a revolution
After 20 years of hope, promise and controversy, human embryonic stem cells are reshaping biological concepts and starting to move into the clinic.
David Cyranoski
When antibiotics turn toxic
Commonly prescribed drugs called fluoroquinolones cause rare, disabling side effects. Researchers are struggling to work out why.
Jo Marchant
Multimedia  
 
 
Nature: 22 March 2018
This week, blind Mexican cavefish, the gut microbiome, and a wearable brain scanner.
Correction  
 
 
Correction
Corrections
Clarification
 
 
Advertising.
 
 
Comment
 
A global observatory for gene editing
Sheila Jasanoff and J. Benjamin Hurlbut call for an international network of scholars and organizations to support a new kind of conversation.
Sheila Jasanoff, J. Benjamin Hurlbut
Rethink public engagement for gene editing
The breadth of social and moral questions raised requires a new architecture for democratic debate, insists Simon Burall.
Simon Burall
Books and Arts  
 
 
 
A trek through the probable universe
Natalie Wolchover enjoys Philip Ball’s grapple with slippery questions about the quantum revolution.
Natalie Wolchover
The laws of the cosmos, solar-power challenges and Darwin’s contribution to geology: Books in brief
Barbara Kiser reviews five of the week’s best science picks.
Barbara Kiser
Fact, fiction and the art of deception
Anthony King enjoys an exhibition of hoaxes, frauds, simulacra and substitutes.
Anthony King
Correspondence  
 
 
 
Avoid vested interests in safety testing new products
Hans Muilerman
  Cryptocurrency mining is neither wasteful nor uneconomic
Stuart Wimbush
Risks associated with glyphosate weedkiller resurface
Stéphane Foucart, Stéphane Horel
  Create and empower lead authors from the global south
Anton Nurcahyo, Erik Meijaard
Obituary  
 
 
 
Stephen Hawking (1942–2018)
World-renowned physicist who defied the odds.
Martin Rees
 
 
Specials
 
TECHNOLOGY FEATURE  
 
 
 
How atomic imaging is being pushed to its limit
Atomic force microscopy is revealing molecular structures with startling clarity. Artificial intelligence and automation could expand its potential.
Andy Extance
Nature Index 2018 Japan  
 
 
 
Stalled ambition
Continuing decline in Japan’s research performance bodes ill for the country’s ambition to become a ‘super-smart’ society.
Catherine Armitage
Resistance to reform
Efforts to improve Japan's scientific status include top-down institutional change, but tradition is hard to break.
Ichiko Fuyuno
Relative gain
A graphic representation shows how Japan’s production of natural-science papers has fallen but some institutions shine.
Calling rikejo
A push for more Japanese women of science.
Noriko Osumi
Partners in discovery
Osaka University bets on commercial-academic collaborations to survive.
Ichiko Fuyuno
Strength from weakness
Japan's vision of a high-tech, 'super-smart' society relies on sustained investment to arrest scientific decline.
Tim Hornyak
Pillars of a smart society
Across the scientific fields, Japanese researchers are bringing together the virtual and real worlds.
Smriti Mallapaty
Facing down disaster
An institute's work on warning and mitigation systems for catastrophic events is a national priority.
Tim Hornyak
Short-term generation
With permanent academic jobs scarce, young researchers on temporary contracts are nervous about the future. The government wants industry to utilize their talents.
Smriti Mallapaty
Access granted
International collaborations are rising, but not enough to put Japan on the international researcher circuit.
Daniel Hurst
Noble halls of discovery
Gakushuin University is the top-ranking institution when assessed on the quality of its research in the natural sciences.
Tim Hornyak
A guide to the Nature Index
A description of the terminology and methodology used in this supplement, and a guide to the functionality available free online at natureindex.com
 
 
Research
 
NEW ONLINE  
 
 
 
Encoding of danger by parabrachial CGRP neurons
Single-cell recordings show that CGRP-expressing neurons in the parabrachial nucleus in mice respond to both noxious stimuli and signals of feeding satiety.
Extensive impact of non-antibiotic drugs on human gut bacteria
A screen of more than 1,000 drugs shows that about a quarter of the non-antibiotic drugs inhibit the growth of at least one commensal bacterial strain in vitro.
De novo mutations in regulatory elements in neurodevelopmental disorders
Analysis of rare de novo mutations in gene regulatory elements suggests that 1–3% of patients with neurodevelopmental disorders carry such mutations in elements that are active in the fetal brain.
Massive Dirac fermions in a ferromagnetic kagome metal
Fe3Sn2 hosts massive Dirac fermions, owing to the underlying symmetry properties of the bilayer kagome lattice in the ferromagnetic state and the atomic spin–orbit coupling.
Insulin resistance in cavefish as an adaptation to a nutrient-limited environment
Cavefish populations of the Mexican tetra, Astyanax mexicanus, carry a mutation in the insulin receptor gene that renders them insulin- and starvation-resistant relative to surface populations of the same species.
Hepatocyte-secreted DPP4 in obesity promotes adipose inflammation and insulin resistance
Hepatocytes secrete DPP4, which promotes adipose tissue inflammation and insulin resistance in obese mice, suggesting a new specific target for treatment of metabolic disorders.
Structural insights into the voltage and phospholipid activation of the mammalian TPC1 channel
Structures of the voltage-gated and phosphatidylinositol 3,5-bisphosphate-activated mouse two-pore channel TPC1 in apo and ligand-bound states provide insights into the selectivity and gating mechanisms of mammalian two-pore channels.
The protein histidine phosphatase LHPP is a tumour suppressor
Decreased expression of histidine phosphatase LHPP, a novel tumour suppressor, results in increased global histidine phosphorylation and hepatocellular carcinoma.
Optogenetic regulation of engineered cellular metabolism for microbial chemical production
Finely tuned optogenetic control of engineered Saccharomyces cerevisiae enhances the biosynthesis of valuable products such as isobutanol in laboratory-scale fermenters.
Timing of oceans on Mars from shoreline deformation
Ancient shorelines on Mars must have formed before and during the emplacement of the Tharsis volcanic province, instead of afterwards as previously assumed, suggesting that oceans on Mars formed early.
Moving magnetoencephalography towards real-world applications with a wearable system
A new magnetoencephalography system allows high-spatiotemporal-resolution imaging of human brain function in moving subjects.
Reconstructing the genetic history of late Neanderthals
Genetic similarity among late Neanderthals is predicted well by their geographical location, and although some of these Neanderthals were contemporaneous with early modern humans, their genomes show no evidence of recent gene flow from modern humans.
Shifts in tree functional composition amplify the response of forest biomass to climate
Forest inventory data from the 1980s and 2000s show the response of eastern USA forests to climate variability; direct effects of climate on forest biomass are amplified by changes in tree species composition.
Brief Communications Arising  
 
 
 
Kitcre knock-in mice fail to fate-map cardiac stem cells
Carla Vicinanza, Iolanda Aquila, Eleonora Cianflone et al.
van Berlo et al. reply
Jop H. van Berlo, Onur Kanisicak, Marjorie Maillet et al.
Articles  
 
 
 
Developmental diversification of cortical inhibitory interneurons
The embryonic emergence of interneuron subtypes in mice is revealed by integrated single-cell transcriptomic analysis along a developmental time course.
Christian Mayer, Christoph Hafemeister, Rachel C. Bandler et al.
Placentation defects are highly prevalent in embryonic lethal mouse mutants
Analysis of embryonic lethal and sub-viable mouse knockout lines reveals that ablation of many genes affects placental development, and that the occurrence of placental defects is co-associated with abnormal brain, heart and vascular system development.
Vicente Perez-Garcia, Elena Fineberg, Robert Wilson et al.
DNA methylation-based classification of central nervous system tumours
An online approach for the DNA methylation-based classification of central nervous system tumours across all entities and age groups has been developed to help to improve current diagnostic standards.
David Capper, David T. W. Jones, Martin Sill et al.
Integrative structure and functional anatomy of a nuclear pore complex
The structure of the yeast nuclear pore complex, determined with sub-nanometre precision using an integrative approach that combines a wide range of data, reveals details of its architecture, transport mechanism and evolutionary origins.
Seung Joong Kim, Javier Fernandez-Martinez, Ilona Nudelman et al.
Letters  
 
 
 
A single population of red globular clusters around the massive compact galaxy NGC 1277
The massive relic galaxy NGC 1277 has few blue globular clusters, indicating that it has undergone little mass accretion and is a candidate ‘red nugget’ in the nearby Universe.
Michael A. Beasley, Ignacio Trujillo, Ryan Leaman et al.
Image reconstruction by domain-transform manifold learning
Image reconstruction is reformulated using a data-driven, supervised machine learning framework that allows a mapping between sensor and image domains to emerge from even noisy and undersampled data, improving accuracy and reducing image artefacts.
Bo Zhu, Jeremiah Z. Liu, Stephen F. Cauley et al.
Continuous-wave room-temperature diamond maser
A continuous-wave room-temperature maser is demonstrated by combining a cavity with a high Purcell factor with the narrow linewidth of nitrogen–vacancy defect centres in diamond.
Jonathan D. Breeze, Enrico Salvadori, Juna Sathian et al.
Maximizing and stabilizing luminescence from halide perovskites with potassium passivation
Modifying the surfaces and grain boundaries of perovskites with passivating potassium halide layers can mitigate non-radiative losses and photoinduced ion migration, increasing luminescence yields and improving charge transport and interfaces with device electrodes.
Mojtaba Abdi-Jalebi, Zahra Andaji-Garmaroudi, Stefania Cacovich et al.
A lithium–oxygen battery with a long cycle life in an air-like atmosphere
A lithium–oxygen battery, comprising a lithium carbonate-based protected anode, a molybdenum disulfide cathode and an ionic liquid/dimethyl sulfoxide electrolyte, operates in a simulated air atmosphere with a long cycle life of up to 700 cycles.
Mohammad Asadi, Baharak Sayahpour, Pedram Abbasi et al.
Isotopic evolution of the protoplanetary disk and the building blocks of Earth and the Moon
The mass-independent calcium isotope composition of inner-Solar-System bodies is correlated with their masses and accretion ages, indicating a rapid growth for the precursors of Earth and the Moon during the protoplanetary disk’s lifetime.
Martin Schiller, Martin Bizzarro, Vera Assis Fernandes
Humans thrived in South Africa through the Toba eruption about 74,000 years ago
Youngest Toba Tuff glass shards found together with evidence of human occupation at two archaeological sites from the southern coast of South Africa indicate that early modern humans thrived in this region despite the eruption of the Toba supervolcano about 74,000 years ago.
Eugene I. Smith, Zenobia Jacobs, Racheal Johnsen et al.
Carbon dioxide addition to coral reef waters suppresses net community calcification
In situ carbon dioxide enrichment experiments show that ocean acidification poses a threat to coral reefs by reducing the saturation state of aragonite and the concentration of carbonate ions and that this impairs community calcification.
Rebecca Albright, Yuichiro Takeshita, David A. Koweek et al.
Dysregulation of expression correlates with rare-allele burden and fitness loss in maize
A multi-tissue gene expression resource representative of the genotypic and phenotypic diversity of modern inbred maize reveals the effect of rare alleles and evolutionary history on the regulation of gene expression.
Karl A. G. Kremling, Shu-Yun Chen, Mei-Hsiu Su et al.
A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex
Analysis of gene expression at single-cell resolution in the developing prefrontal cortex of the human embryo reveals a diversity of cell types, elucidates cell lineages and identifies signalling pathways that regulate development.
Suijuan Zhong, Shu Zhang, Xiaoying Fan et al.
Diffusible repression of cytokinin signalling produces endodermal symmetry and passage cells
In an Arabidopsis model, repression of cytokinin in the root meristem produces a distinct population of xylem-pole endodermal cells, which resist suberization to become passage cells that enable transport across the otherwise-impermeable endodermis.
Tonni Grube Andersen, Sadaf Naseer, Robertas Ursache et al.
Carbonate-sensitive phytotransferrin controls high-affinity iron uptake in diatoms
Phytotransferrin, a functional analogue of transferrin, has an obligate requirement for carbonate to bind iron, which suggests that acidification-driven declines in the concentration of seawater carbonate ions may negatively affect diatom iron acquisition.
Jeffrey B. McQuaid, Adam B. Kustka, Miroslav Oborník et al.
The cis-regulatory dynamics of embryonic development at single-cell resolution
An improved assay for chromatin accessibility at single-cell resolution in Drosophila melanogaster embryos enables identification of developmental-stage- and cell-lineage-specific patterns of chromatin-level transcriptional regulation.
Darren A. Cusanovich, James P. Reddington, David A. Garfield et al.
CORRIGENDUM  
 
 
 
Corrigendum: Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification
Sven Reischauer, Oliver A. Stone, Alethia Villasenor et al.
Errata  
 
 
 
Erratum: Skin microbiota–host interactions
Y. Erin Chen, Michael A. Fischbach, Yasmine Belkaid
Erratum: The Beaker phenomenon and the genomic transformation of northwest Europe
Iñigo Olalde, Selina Brace, Morten E. Allentoft et al.
News and Views  
 
 
 
Machine learning classifies cancer
Derek Wong, Stephen Yip
A diamond age of masers
Ren-Bao Liu
50 & 100 Years Ago
 
 
On April 22, 2017, more than one million marchers worldwide took to the streets to stand up for science in society and their own lives--and each of them has a story to tell. Through signs, artwork, stories, and photographs, Science Not Silence shares some of the voices from the March for Science movement. Science Not Silence celebrates the success of the movement, amplifies the passion and creativity of its supporters, and reminds everyone how important it is to keep marching.
Protein aggregates caught stalling
Laura Pontano Vaites, J. Wade Harper
 
Calcium signals in planetary embryos
Alessandro Morbidelli
A mixed model of neuronal diversity
Ludovic Telley, Denis Jabaudon
 
A cellular passage to the root interior
Sedeer el-Showk, Ari Pekka Mähönen
 
 
Careers & Jobs
 
Feature  
 
 
 
How to sail smoothly from academia to industry
Kendall Powell
Career Briefs  
 
 
 
Workplace culture can push women out of research
Children and infants must be welcome at scientific conferences, say scientist-parents
Futures  
 
 
This big
A ray of hope.
John Cooper Hamilton
 
 
 
 
 

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International Center for Young Scientists (ICYS) - National Institute for Materials Science (NIMS) 

 
 
 
 
 

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Johns Hopkins University 

 
 
 
 
 

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Universitätsklinikum Carl-Gustav-Carus Dresden 

 
 
 
 

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Clinical Trial Innovation Summit 2018

 
 

07.05.18 Boston, USA

 
 
 
 

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