The ISME Journal - Table of Contents alert Volume 12 Issue 2

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TABLE OF CONTENTS Volume 12, Issue 2 (February 2018) In this issue Commentary Perspective Original Articles Short Communications Also new AOP   Sign up for e-alerts Recommend to your library Web feed Subscribe Commentary Top Uncultivated microbes—in need of their own nomenclature? Aharon Oren and George M Garrity ISME J 2018 12: 309-311; advance online publication, October 20, 2017; 10.1038/ismej.2017.188 Full Text Perspective Top Build your own soil: exploring microfluidics to create microbial habitat structures OPEN Kristin Aleklett, E Toby Kiers, Pelle Ohlsson, Thomas S Shimizu, Victor EA Caldas and Edith C Hammer ISME J 2018 12: 312-319; advance online publication, November 14, 2017; 10.1038/ismej.2017.184 Abstract | Full Text Original Articles Top Function-related replacement of bacterial siderophore pathways OPEN Hilke Bruns, Max Crüsemann, Anne-Catrin Letzel, Mohammad Alanjary, James O McInerney, Paul R Jensen, Stefan Schulz, Bradley S Moore and Nadine Ziemert ISME J 2018 12: 320-329; advance online publication, August 15, 2017; 10.1038/ismej.2017.137 Abstract | Full Text Acetoclastic Methanosaeta are dominant methanogens in organic-rich Antarctic marine sediments Stephanie A Carr, Florence Schubotz, Robert B Dunbar, Christopher T Mills, Robert Dias, Roger E Summons and Kevin W Mandernack ISME J 2018 12: 330-342; advance online publication, October 17, 2017; 10.1038/ismej.2017.150 Abstract | Full Text Cyanophage-encoded lipid desaturases: oceanic distribution, diversity and function OPEN Sheila Roitman, Ellen Hornung, José Flores-Uribe, Itai Sharon, Ivo Feussner and Oded Béjà ISME J 2018 12: 343-355; advance online publication, October 13, 2017; 10.1038/ismej.2017.159 Abstract | Full Text Individual-level trait diversity predicts phytoplankton community properties better than species richness or evenness Simone Fontana, Mridul Kanianthara Thomas, Mirela Moldoveanu, Piet Spaak and Francesco Pomati ISME J 2018 12: 356-366; advance online publication, October 3, 2017; 10.1038/ismej.2017.160 Abstract | Full Text Bacteria alone establish the chemical basis of the wood-fall chemosynthetic ecosystem in the deep-sea Dimitri Kalenitchenko, Nadine Le Bris, Laetitia Dadaglio, Erwan Peru, Arnaud Besserer and Pierre E Galand ISME J 2018 12: 367-379; advance online publication, October 6, 2017; 10.1038/ismej.2017.163 Abstract | Full Text Mycorrhizal fungi show regular community compositions in natural ecosystems Erik Verbruggen, Merlin Sheldrake, Luke D Bainard, Baodong Chen, Tobias Ceulemans, Johan De Gruyter and Maarten Van Geel ISME J 2018 12: 380-385; advance online publication, October 6, 2017; 10.1038/ismej.2017.169 Abstract | Full Text Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline OPEN Sandra Denman, James Doonan, Emma Ransom-Jones, Martin Broberg, Sarah Plummer, Susan Kirk, Kelly Scarlett, Andrew R Griffiths, Maciej Kaczmarek, Jack Forster, Andrew Peace, Peter N Golyshin, Francis Hassard, Nathan Brown, John G Kenny and James E McDonald ISME J 2018 12: 386-399; advance online publication, October 13, 2017; 10.1038/ismej.2017.170 Abstract | Full Text The plant circadian clock influences rhizosphere community structure and function Charley J Hubbard, Marcus T Brock, Linda TA van Diepen, Loïs Maignien, Brent E Ewers and Cynthia Weinig ISME J 2018 12: 400-410; advance online publication, October 20, 2017; 10.1038/ismej.2017.172 Abstract | Full Text Metabolic shift at the class level sheds light on adaptation of methanogens to oxidative environments Zhe Lyu and Yahai Lu ISME J 2018 12: 411-423; advance online publication, November 14, 2017; 10.1038/ismej.2017.173 Abstract | Full Text Characterization of ecologically diverse viruses infecting co-occurring strains of cosmopolitan hyperhalophilic Bacteroidetes OPEN Judith Villamor, María Dolores Ramos-Barbero, Pedro González-Torres, Toni Gabaldón, Ramón Rosselló-Móra, Inmaculada Meseguer, Manuel Martínez-García, Fernando Santos and Josefa Antón ISME J 2018 12: 424-437; advance online publication, November 3, 2017; 10.1038/ismej.2017.175 Abstract | Full Text Bacterial secretion of D-arginine controls environmental microbial biodiversity Laura Alvarez, Alena Aliashkevich, Miguel A de Pedro and Felipe Cava ISME J 2018 12: 438-450; advance online publication, October 13, 2017; 10.1038/ismej.2017.176 Abstract | Full Text Soil microbial diversity drives the priming effect along climate gradients: a case study in Madagascar Kanto Razanamalala, Tantely Razafimbelo, Pierre-Alain Maron, Lionel Ranjard, Nicolas Chemidlin, Mélanie Lelièvre, Samuel Dequiedt, Volaniaina H Ramaroson, Claire Marsden, Thierry Becquer, Jean Trap, Eric Blanchart and Laetitia Bernard ISME J 2018 12: 451-462; advance online publication, October 17, 2017; 10.1038/ismej.2017.178 Abstract | Full Text Clonal expansion behind a marine diatom bloom Maria Valeria Ruggiero, Domenico D'Alelio, Maria Immacolata Ferrante, Mariano Santoro, Laura Vitale, Gabriele Procaccini and Marina Montresor ISME J 2018 12: 463-472; advance online publication, November 21, 2017; 10.1038/ismej.2017.181 Abstract | Full Text Degradation of hydrogen peroxide at the ocean’s surface: the influence of the microbial community on the realized thermal niche of Prochlorococcus Lanying Ma, Benjamin C Calfee, J Jeffrey Morris, Zackary I Johnson and Erik R Zinser ISME J 2018 12: 473-484; advance online publication, October 31, 2017; 10.1038/ismej.2017.182 Abstract | Full Text Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities Wenxue Wu, Hsiao-Pei Lu, Akash Sastri, Yi-Chun Yeh, Gwo-Ching Gong, Wen-Chen Chou and Chih-Hao Hsieh ISME J 2018 12: 485-494; advance online publication, November 10, 2017; 10.1038/ismej.2017.183 Abstract | Full Text Electron carriers in microbial sulfate reduction inferred from experimental and environmental sulfur isotope fractionations Christine B Wenk, Boswell A Wing and Itay Halevy ISME J 2018 12: 495-507; advance online publication, October 31, 2017; 10.1038/ismej.2017.185 Abstract | Full Text Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations Wei Qin, Shady A Amin, Rachel A Lundeen, Katherine R Heal, Willm Martens-Habbena, Serdar Turkarslan, Hidetoshi Urakawa, Kyle C Costa, Erik L Hendrickson, Tony Wang, David AC Beck, Sonia M Tiquia-Arashiro, Fred Taub, Andrew D Holmes, Neeraja Vajrala, Paul M Berube, Todd M Lowe, James W Moffett, Allan H Devol, Nitin S Baliga, Daniel J Arp, Luis A Sayavedra-Soto, Murray Hackett, E Virginia Armbrust, Anitra E Ingalls and David A Stahl ISME J 2018 12: 508-519; advance online publication, October 20, 2017; 10.1038/ismej.2017.186 Abstract | Full Text The impact of elevated CO2 on Prochlorococcus and microbial interactions with ‘helper’ bacterium Alteromonas Gwenn MM Hennon, J Jeffrey Morris, Sheean T Haley, Erik R Zinser, Alexander R Durrant, Elizabeth Entwistle, Terje Dokland and Sonya T Dyhrman ISME J 2018 12: 520-531; advance online publication, October 31, 2017; 10.1038/ismej.2017.189 Abstract | Full Text Phage mobility is a core determinant of phage–bacteria coexistence in biofilms OPEN Matthew Simmons, Knut Drescher, Carey D Nadell and Vanni Bucci ISME J 2018 12: 531-543; advance online publication, November 10, 2017; 10.1038/ismej.2017.190 Abstract | Full Text Changes in bacterioplankton community structure during early lake ontogeny resulting from the retreat of the Greenland Ice Sheet OPEN Hannes Peter, Erik Jeppesen, Luc De Meester and Ruben Sommaruga ISME J 2018 12: 544-555; advance online publication, October 31, 2017; 10.1038/ismej.2017.191 Abstract | Full Text In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina Lars Behrendt, Jean-Baptiste Raina, Adrian Lutz, Witold Kot, Mads Albertsen, Per Halkjær-Nielsen, Søren J Sørensen, Anthony WD Larkum and Michael Kühl ISME J 2018 12: 556-567; advance online publication, October 31, 2017; 10.1038/ismej.2017.192 Abstract | Full Text Cyanobacterial photosynthesis under sulfidic conditions: insights from the isolate Leptolyngbya sp. strain hensonii OPEN Trinity L Hamilton, Judith M Klatt, Dirk de Beer and Jennifer L Macalady ISME J 2018 12: 568-584; advance online publication, January 12, 2018; 10.1038/ismej.2017.193 Abstract | Full Text Immune loss as a driver of coexistence during host-phage coevolution OPEN Jake L Weissman, Rayshawn Holmes, Rodolphe Barrangou, Sylvain Moineau, William F Fagan, Bruce Levin and Philip L F Johnson ISME J 2018 12: 585-597; advance online publication, January 12, 2018; 10.1038/ismej.2017.194 Abstract | Full Text What intrinsic and extrinsic factors explain the stoichiometric diversity of aquatic heterotrophic bacteria? Casey M Godwin and James B Cotner ISME J 2018 12: 598-609; advance online publication, November 24, 2017; 10.1038/ismej.2017.195 Abstract | Full Text Specific substrate-driven changes in human faecal microbiota composition contrast with functional redundancy in short-chain fatty acid production Nicole Reichardt, Maren Vollmer, Grietje Holtrop, Freda M Farquharson, Daniel Wefers, Mirko Bunzel, Sylvia H Duncan, Janice E Drew, Lynda M Williams, Graeme Milligan, Thomas Preston, Douglas Morrison, Harry J Flint and Petra Louis ISME J 2018 12: 610-622; advance online publication, December 1, 2017; 10.1038/ismej.2017.196 Abstract | Full Text Microbial life on a sand grain: from bulk sediment to single grains OPEN David Probandt, Thilo Eickhorst, Andreas Ellrott, Rudolf Amann and Katrin Knittel ISME J 2018 12: 623-633; advance online publication, December 1, 2017; 10.1038/ismej.2017.197 Abstract | Full Text Short Communications Top Soil protist communities form a dynamic hub in the soil microbiome Wu Xiong, Alexandre Jousset, Sai Guo, Ida Karlsson, Qingyun Zhao, Huasong Wu, George A Kowalchuk, Qirong Shen, Rong Li and Stefan Geisen ISME J 2018 12: 634-638; advance online publication, October 13, 2017; 10.1038/ismej.2017.171 Abstract | Full Text Recent expansion of heat-activated retrotransposons in the coral symbiont Symbiodinium microadriaticum OPEN Jit Ern Chen, Guoxin Cui, Xin Wang, Yi Jin Liew and Manuel Aranda ISME J 2018 12: 639-643; advance online publication, October 20, 2017; 10.1038/ismej.2017.179 Abstract | Full Text Dispersal timing determines the importance of priority effects in bacterial communities Pavel Svoboda, Eva S Lindström, Omneya Ahmed Osman and Silke Langenheder ISME J 2018 12: 644-646; advance online publication, October 20, 2017; 10.1038/ismej.2017.180 Abstract | Full Text Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. 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