Wednesday, January 18, 2017

Nature Reviews Genetics Contents February 2017 Volume 18 Number 2 pp67-142

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TABLE OF CONTENTS
 
February 2017 Volume 18 Number 2
Nature Reviews Genetics cover
Impact Factor 35.898 *
In this issue
Research Highlights
Reviews


Also this month
Article series:
Regulatory elements
Study designs
Disease mechanisms
 Featured article:
Regulatory activities of transposable elements: from conflicts to benefits
Edward B. Chuong, Nels C. Elde & Cédric Feschotte




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RESEARCH HIGHLIGHTS

Top

Genetic screens: Combining CRISPR perturbations and RNA-seq
p67 | doi:10.1038/nrg.2016.171
PDF


Development: Modifying sex in flies
p68 | doi:10.1038/nrg.2016.164
PDF


Genetic engineering: A genome-editing off switch
p68 | doi:10.1038/nrg.2016.166
PDF


Genetic engineering: CREATE-ing genome-wide designed mutations
p69 | doi:10.1038/nrg.2016.163
PDF


RNA: The code in the cap
p70 | doi:10.1038/nrg.2016.165
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Functional genomics: Screening for lncRNA function
p70 | doi:10.1038/nrg.2016.168
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CRISPR Calendar 2017

To celebrate the continuing rise to fame of the CRISPR system, the Nature Reviews Genetics 2017 CRISPR calendar highlights the underlying biology of CRISPR, as well as its diverse range of exciting potential applications in genetic research, biotechnology and therapeutics. 

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REVIEWS

Top
Article series: Regulatory elements
Regulatory activities of transposable elements: from conflicts to benefits
Edward B. Chuong, Nels C. Elde & Cédric Feschotte
p71 | doi:10.1038/nrg.2016.139
Transposable elements (TEs) are widely known for their deleterious consequences of selfish propagation and mutagenesis. However, as described in this Review, TEs also provide hosts with rich, beneficial gene-regulatory machinery in the form of regulatory DNA elements and TE-derived gene products. The authors highlight the diverse regulatory contributions of TEs to organismal physiology and pathology, provide a framework for responsibly assigning functional roles to TEs and offer visions for the future.
Abstract | Full Text | PDF


Article series: Study designs
Making sense of genomic islands of differentiation in light of speciation
Jochen B. W. Wolf & Hans Ellegren
p87 | doi:10.1038/nrg.2016.133
To characterize the genetic underpinnings of speciation, genome scans can identify genomic regions that differ between divergent populations of wild organisms. In this Review, Wolf and Ellegren describe the methodological details of these approaches and how genomic islands of differentiation should be interpreted cautiously in the search for 'speciation genes'. They also discuss methodological best practice that takes into consideration genomic differentiation occurring through speciation-independent evolutionary processes.
Abstract | Full Text | PDF | Supplementary information


Order from clutter: selective interactions at mammalian replication origins
Mirit I. Aladjem & Christophe E. Redon
p101 | doi:10.1038/nrg.2016.141
Genome-wide mapping, mathematical models and functional genetic analyses suggest that distinct molecular interactions at replication initiation sites underlie the regulation of DNA replication in metazoans. In this Review, the authors discuss recent insights into these DNA-protein interactions, and the genetic and epigenetic features of mammalian replication origins.
Abstract | Full Text | PDF


Dissecting the genetics of complex traits using summary association statistics
Bogdan Pasaniuc & Alkes L. Price
p117 | doi:10.1038/nrg.2016.142
Investigating the genetic basis of complex traits and diseases using individual-level genetic data from genome-wide association studies is often hampered by privacy concerns and logistical considerations. Here, the authors review recent statistical methods that leverage summary association data, which are widely available and can circumvent these issues.
Abstract | Full Text | PDF


Article series: Disease mechanisms
Mosaicism in health and disease — clones picking up speed
Lars A. Forsberg, David Gisselsson & Jan P. Dumanski
p128 | doi:10.1038/nrg.2016.145
Many genetic studies focus on germline-inherited genomic variation. However, there is increasing realization that mutations occurring during our lifetime are so frequent and pervasive that, in all likelihood, no two of our cells are truly genetically identical. In this Review, the authors describe the detection, molecular nature and dynamics of this under-appreciated post-zygotic variation, and discuss the implications for normal human physiology and disease.
Abstract | Full Text | PDF


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