The ISME Journal - Table of Contents alert Volume 11 Issue 1

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TABLE OF CONTENTS Volume 11, Issue 1 (January 2017) In this issue Perspectives Original Articles Short Communications Also new AOP Sign up for e-alerts Recommend to your library Web feed Subscribe Perspectives Top Diversity is the question, not the answer OPEN Ashley Shade ISME J 2017 11: 1-6; advance online publication, September 16, 2016; 10.1038/ismej.2016.118 Abstract | Full Text iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure OPEN Benjamin Bolduc, Ken Youens-Clark, Simon Roux, Bonnie L Hurwitz and Matthew B Sullivan ISME J 2017 11: 7-14; advance online publication, July 15, 2016; 10.1038/ismej.2016.89 Abstract | Full Text Original Articles Top Interleukin-15 promotes intestinal dysbiosis with butyrate deficiency associated with increased susceptibility to colitis Marlies Meisel, Toufic Mayassi, Hannah Fehlner-Peach, Jason C Koval, Sarah L O'Brien, Reinhard Hinterleitner, Kathryn Lesko, Sangman Kim, Romain Bouziat, Li Chen, Christopher R Weber, Sarkis K Mazmanian, Bana Jabri and Dionysios A Antonopoulos ISME J 2017 11: 15-30; advance online publication, September 20, 2016; 10.1038/ismej.2016.114 Abstract | Full Text Ubiquitous marine bacterium inhibits diatom cell division Helena M van Tol, Shady A Amin and E Virginia Armbrust ISME J 2017 11: 31-42; advance online publication, September 13, 2016; 10.1038/ismej.2016.112 Abstract | Full Text Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time OPEN Nina Dombrowski, Klaus Schlaeppi, Matthew T Agler, Stéphane Hacquard, Eric Kemen, Ruben Garrido-Oter, Jörg Wunder, George Coupland and Paul Schulze-Lefert ISME J 2017 11: 43-55; advance online publication, August 2, 2016; 10.1038/ismej.2016.109 Abstract | Full Text Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere Yan Yan, Eiko E Kuramae, Mattias de Hollander, Peter G L Klinkhamer and Johannes A van Veen ISME J 2017 11: 56-66; advance online publication, August 2, 2016; 10.1038/ismej.2016.108 Abstract | Full Text Microbe–microbe interactions trigger Mn(II)-oxidizing gene expression Jinsong Liang, Yaohui Bai, Yujie Men and Jiuhui Qu ISME J 2017 11: 67-77; advance online publication, August 12, 2016; 10.1038/ismej.2016.106 Abstract | Full Text Genomics of variation in nitrogen fixation activity in a population of the thermophilic cyanobacterium Mastigocladus laminosus Patrick R Hutchins and Scott R Miller ISME J 2017 11: 78-86; advance online publication, August 9, 2016; 10.1038/ismej.2016.105 Abstract | Full Text Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments Patrick Browne, Hideyuki Tamaki, Nikos Kyrpides, Tanja Woyke, Lynne Goodwin, Hiroyuki Imachi, Suzanna Bräuer, Joseph B Yavitt, Wen-Tso Liu, Stephen Zinder and Hinsby Cadillo-Quiroz ISME J 2017 11: 87-99; advance online publication, August 23, 2016; 10.1038/ismej.2016.104 Abstract | Full Text The antibiotic resistome of swine manure is significantly altered by association with the Musca domestica larvae gut microbiome Hang Wang, Naseer Sangwan, Hong-Yi Li, Jian-Qiang Su, Wei-Yin Oyang, Zhi-Jian Zhang, Jack A Gilbert, Yong-Guan Zhu, Fan Ping and Han-Luo Zhang ISME J 2017 11: 100-111; advance online publication, July 26, 2016; 10.1038/ismej.2016.103 Abstract | Full Text Adaptive thermostability of light-harvesting complexes in marine picocyanobacteria Justine Pittera, Frédéric Partensky and Christophe Six ISME J 2017 11: 112-124; advance online publication, July 26, 2016; 10.1038/ismej.2016.102 Abstract | Full Text The methanogenic redox cofactor F420 is widely synthesized by aerobic soil bacteria Blair Ney, F Hafna Ahmed, Carlo R Carere, Ambarish Biswas, Andrew C Warden, Sergio E Morales, Gunjan Pandey, Stephen J Watt, John G Oakeshott, Matthew C Taylor, Matthew B Stott, Colin J Jackson and Chris Greening ISME J 2017 11: 125-137; advance online publication, August 9, 2016; 10.1038/ismej.2016.100 Abstract | Full Text Metagenomic covariation along densely sampled environmental gradients in the Red Sea Luke R Thompson, Gareth J Williams, Mohamed F Haroon, Ahmed Shibl, Peter Larsen, Joshua Shorenstein, Rob Knight and Ulrich Stingl ISME J 2017 11: 138-151; advance online publication, July 15, 2016; 10.1038/ismej.2016.99 Abstract | Full Text Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner Uli Klümper, Arnaud Dechesne, Leise Riber, Kristian K Brandt, Arda Gülay, Søren J Sørensen and Barth F Smets ISME J 2017 11: 152-165; advance online publication, August 2, 2016; 10.1038/ismej.2016.98 Abstract | Full Text A quantitative analysis of the direct and indirect costs of nitrogen fixation: a model based on Azotobacter vinelandii OPEN Keisuke Inomura, Jason Bragg and Michael J Follows ISME J 2017 11: 166-175; advance online publication, October 14, 2016; 10.1038/ismej.2016.97 Abstract | Full Text Effects of dispersal and selection on stochastic assembly in microbial communities Sarah Evans, Jennifer B H Martiny and Steven D Allison ISME J 2017 11: 176-185; advance online publication, August 5, 2016; 10.1038/ismej.2016.96 Abstract | Full Text Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales OPEN Matthew J Neave, Rita Rachmawati, Liping Xun, Craig T Michell, David G Bourne, Amy Apprill and Christian R Voolstra ISME J 2017 11: 186-200; advance online publication, July 8, 2016; 10.1038/ismej.2016.95 Abstract | Full Text Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly Tomàs Llorens–Marès, Zhenfeng Liu, Lisa Zeigler Allen, Douglas B Rusch, Matthew T Craig, Chris L Dupont, Donald A Bryant and Emilio O Casamayor ISME J 2017 11: 201-211; advance online publication, July 8, 2016; 10.1038/ismej.2016.93 Abstract | Full Text Modeling succession of key resource-harvesting traits of mixotrophic plankton OPEN Terje Berge, Subhendu Chakraborty, Per Juel Hansen and Ken H Andersen ISME J 2017 11: 212-223; advance online publication, August 2, 2016; 10.1038/ismej.2016.92 Abstract | Full Text An unusual strategy for the anoxic biodegradation of phthalate Christa Ebenau-Jehle, Mario Mergelsberg, Stefanie Fischer, Thomas Brüls, Nico Jehmlich, Martin von Bergen and Matthias Boll ISME J 2017 11: 224-236; advance online publication, July 8, 2016; 10.1038/ismej.2016.91 Abstract | Full Text Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses François Enault, Arnaud Briet, Léa Bouteille, Simon Roux, Matthew B Sullivan and Marie-Agnès Petit ISME J 2017 11: 237-247; advance online publication, June 21, 2016; 10.1038/ismej.2016.90 Abstract | Full Text Association mapping reveals novel serpentine adaptation gene clusters in a population of symbiotic Mesorhizobium OPEN Stephanie S Porter, Peter L Chang, Christopher A Conow, Joseph P Dunham and Maren L Friesen ISME J 2017 11: 248-262; advance online publication, July 15, 2016; 10.1038/ismej.2016.88 Abstract | Full Text Cultivation of a chemoautotroph from the SUP05 clade of marine bacteria that produces nitrite and consumes ammonium OPEN Vega Shah, Bonnie X Chang and Robert M Morris ISME J 2017 11: 263-271; advance online publication, July 19, 2016; 10.1038/ismej.2016.87 Abstract | Full Text Effectiveness of ecological rescue for altered soil microbial communities and functions Kadiya Calderón, Aymé Spor, Marie-Christine Breuil, David Bru, Florian Bizouard, Cyrille Violle, Romain L Barnard and Laurent Philippot ISME J 2017 11: 272-283; advance online publication, June 24, 2016; 10.1038/ismej.2016.86 Abstract | Full Text Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus OPEN Cristina Howard-Varona, Simon Roux, Hugo Dore, Natalie E Solonenko, Karin Holmfeldt, Lye M Markillie, Galya Orr and Matthew B Sullivan ISME J 2017 11: 284-295; advance online publication, May 17, 2016; 10.1038/ismej.2016.81 Abstract | Full Text Short Communications Top The ‘other’ coral symbiont: Ostreobium diversity and distribution Javier del Campo, Jean-François Pombert, Jan Šlapeta, Anthony Larkum and Patrick J Keeling ISME J 2017 11: 296-299; advance online publication, July 15, 2016; 10.1038/ismej.2016.101 Abstract | Full Text Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation Lea Benedicte Skov Hansen, Dawei Ren, Mette Burmølle and Søren J Sørensen ISME J 2017 11: 300-303; advance online publication, August 9, 2016; 10.1038/ismej.2016.107 Abstract | Full Text Metagenomic recovery of phage genomes of uncultured freshwater actinobacteria Rohit Ghai, Maliheh Mehrshad, Carolina Megumi Mizuno and Francisco Rodriguez-Valera ISME J 2017 11: 304-308; advance online publication, August 9, 2016; 10.1038/ismej.2016.110 Abstract | Full Text Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. The contents of the Natureevents Directory are now live. The digital version is available here. Find the latest scientific conferences, courses, meetings and symposia on natureevents.com. For event advertising opportunities across the Nature Publishing Group portfolio please contact natureevents@nature.com More Nature Events Please note that you need to be a subscriber or site-licence holder to enjoy full-text access to The ISME Journal. In order to do so, please purchase a subscription. You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/nams/svc/myaccount (You will need to log in to be recognised as a nature.com registrant). For further technical assistance, please contact our registration department. For print subscription enquiries, please contact our subscription department. 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