Wednesday, December 21, 2016

Nature contents: 22 December 2016

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  journal cover  
Nature Volume 540 Issue 7634
 
This Week  
 
 
Editorials  
 
 
 
Europe should hold fast to its scientific ambitions
The EU’s fresh round of billion-euro Flagship research projects must be open to all types of science.
Place your bets for a white Christmas
But don’t fall for an old chestnut.
Raise the importance of retirement policy
Studies that inform policies on retirement need to assess occupations as well.
 
 
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World View  
 
 
 
How Woody Guthrie can help us fight for science
After the election of Donald Trump, Jacqueline M. Vadjunec offers a message of resistance and hope from deep within the US Bible Belt.
 
Seven Days  
 
 
 
Ice-age paintings, eczema drug and a Principia first edition
The week in science: 16–22 December 2016.
Research Highlights  
 
 
 
Climate science: Smaller monsoon boost predicted | Evolution: Penis bone lost through evolution | Applied physics: Device breaks cooling record | Ageing: Genes that make mice youthful | HIV: Targeting host genes for therapy | Ocean science: East Antarctic ice melts from below | Archaeology: Early humans cooked vegetables | Cancer genetics: Why melanoma is worse in men | Planetary science: Where Ceres hides its water | Genome editing: Enzyme switches turn CRISPR off
 
 
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News in Focus
 
Peaceful EU starts to fund military research
Shift in focus comes in response to a changing world order and the threat of terrorism.
Elizabeth Gibney
  US Earth scientists plan for uncertain future under Trump
Concerned by president-elect’s choice of advisers, researchers take steps to defend their fields.
Jeff Tollefson, Alexandra Witze
Europe's Galileo satellites herald new era for Earth science
Third global fleet will soon be joined by Asian counterparts, setting the atmosphere abuzz with scientifically-useful radio-wave signals.
Declan Butler
  World Health Organization rethinks its response to disease outbreaks
Programme aims to prevent crises similar to the recent Ebola epidemic.
Erika Check Hayden
2016 in news: The science events that shaped the year
Climate accords, controversial assisted reproduction and the CRISPR patent battle are among the year's top stories.
Alison Abbott, Declan Butler, Davide Castelvecchi et al.
  2016 in pictures: The best science images of the year
Includes storms from space, southern stars and a striking cell.
Daniel Cressey
Features  
 
 
 
Nature’s 10
Ten people who mattered this year.
Multimedia  
 
 
Nature Podcast: 22 December 2016
It’s our bumper end-of-year show, with a 2016 round-up, holiday reading picks, science carols, word games and more.
 
 
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Comment
 
So you want to change the world?
In these tumultuous times, Nancy Baron urges scientists to speak from the heart to build public trust in research.
Nancy Baron
Take the long view
At the end of a difficult year for evidence, Ian L. Boyd, a chief scientific adviser to the UK government, draws lessons for making research more relevant.
Ian L. Boyd
Books and Arts  
 
 
 
Agriculture: Sowing the city
As holiday feasts begin, Laura Lawson surveys the fruitful history of urban farming.
Laura Lawson
Books in brief
Barbara Kiser reviews five of the week's best science picks.
Barbara Kiser
Correspondence  
 
 
 
Post-truth: Study epidemiology of fake news
Adam Kucharski
  Decision-making: Be wary of 'ethical' artificial intelligence
Michael Stocker
Mosquitoes: New contender for most lethal animal
Jeffrey R. Powell
  Publishing: Journals, agree on manuscript format
Quanmin Guo
Rewilding: Vulture restaurants cheat ecosystems
Ainara Cortés-Avizanda, Henrique Miguel Pereira
 
 
 
Specials
 
Outlook: Inflammatory bowel disease  
 
 
 
Inflammatory bowel disease
Richard Hodson
  Biology: A slow-motion epidemic
Michael Eisenstein
Epidemiology: Rising in the East
Kelly Rae Chi
  Q&A: Joel Weinstock
Neil Savage
Genetics: Clues in the code
Sarah DeWeerdt
  Cell-based therapy: Cells on trial
Eric Bender
Microbiota: Reseeding the gut
Liam Drew
  Q&A: Eva Szigethy
Neil Savage
Produced with support from
Sponsor
 
 
Research
 
NEW ONLINE  
 
 
 
DNA repair: A unifying mechanism in neurodegeneration
Identification of a previously uncharacterized genetic disease highlights DNA repair as a shared mechanism in neurodegenerative disorders, and suggests potential therapeutic approaches to tackling them.
Molecular biology: Messenger RNAs marked for longer life
A molecular modification called m6Am has been found to regulate the stability of messenger RNAs in mammalian cells. The mechanism casts fresh light on how reversibly modified RNA bases control the fate of mRNA.
Physiology: Mechanosensor of lung inflation identified
The Piezo2 protein senses changes in lung volume, acting in different neurons to convey this information to the brain. This finding adds to the list of roles for Piezo2 in mechanosensation.
Piezo2 senses airway stretch and mediates lung inflation-induced apnoea
The mechanoreceptor Piezo2 is required for both the Hering–Breuer inflation reflex in adult mice and the inflation of the lungs of newborn mice.
Structure of a CLC chloride ion channel by cryo-electron microscopy
Some CLC proteins are channels that conduct chloride ions passively, whereas others are active co-transporters, a difference that has been hard to understand given their high degree of sequence homology; now, cryo-electron microscopy is used to determine the structure of a mammalian CLC channel, shedding light on this question.
Reversible methylation of m6Am in the 5′ cap controls mRNA stability
Fat mass and obesity-associated protein (FTO) preferentially demethylates m6Am, a modified adenosine that, when present at the 5′ end of certain mRNAs, positively influences mRNA stability by preventing DCP2-mediated decapping.
In situ structures of the genome and genome-delivery apparatus in a single-stranded RNA virus
A high-resolution structure of the bacteriophage MS2 sheds light on the structure of the genome and how the genome is delivered into a bacterium.
Structural basis of an essential interaction between influenza polymerase and Pol II CTD
The crystal structure of bat influenza A polymerase bound to a serine-5 phosphorylated peptide mimic from the C-terminal domain of cellular RNA polymerase II shows how the two polymerases are directly coupled and suggests that the interaction site could be targeted for antiviral drug development.
Reducing phosphorus accumulation in rice grains with an impaired transporter in the node
The phosphorous transporter SPDT is identified in rice; depletion of the transporter gene alters the phosphorus distribution in rice grains and leaves, suggesting that the strategy could be used for agricultural purposes.
Identification of an atypical monocyte and committed progenitor involved in fibrosis
An atypical monocyte with partial granulocyte characteristics is identified and shown to be critical for the development of fibrosis.
Evolution of the global phosphorus cycle
Low phosphorus burial in shallow marine sedimentary rocks before about 750 million years ago implies a change in the global phosphorus cycle, coinciding with the end of what may have been a stable low-oxygen world.
Epigenome-wide association study of body mass index, and the adverse outcomes of adiposity
A large-scale epigenome-wide association study identifies changes in DNA methylation associated with body mass index in blood and adipose tissue, and correlates DNA methylation sites with high risk of incident type 2 diabetes.
XRCC1 mutation is associated with PARP1 hyperactivation and cerebellar ataxia
Biallelic mutations in human XRCC1 are associated with ocular motor apraxia, axonal neuropathy, and progressive cerebellar ataxia.
Aromatic and antiaromatic ring currents in a molecular nanoring
By investigating ring currents, a six-porphyrin nanoring molecule is shown to be antiaromatic in its 4+ oxidation state and aromatic in its 6+ oxidation state.
Spin–orbit-coupled fermions in an optical lattice clock
Spin–orbit coupling is implemented in an optical lattice clock using a narrow optical transition in fermionic 87Sr atoms, thus mitigating the heating problems of previous experiments with alkali atoms and offering new prospects for future investigations.
Observation of the 1S–2S transition in trapped antihydrogen
News and Views  
 
 
 
50 & 100 Years Ago
Biomaterials: Sharks shift their spine into high gear
Matthew A. Kolmann, Adam P. Summers
Planetary science: Frozen in darkness
Luca Maltagliati
 


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Supramolecular chemistry: Unexplored territory for self-assembly
Florian Beuerle
 
Cardiovascular disease: A turbulent path to plaque formation
Vedanta Mehta, Ellie Mehta
Metastasis: Pathways of parallel progression
Cyrus M. Ghajar, Mina J. Bissell
 
Condensed-matter physics: Quantum mechanics in a spin
Leon Balents
2016 Editors' choice
 
Articles  
 
 
 
Redefining the invertebrate RNA virosphere
Profiling the total RNA of 220 invertebrate species leads to the discovery of almost 1,500 new species of RNA virus, revealing that the RNA virosphere is much more diverse than was previously thought.
Mang Shi, Xian-Dan Lin, Jun-Hua Tian et al.
Persistent microbiome alterations modulate the rate of post-dieting weight regain
The identification of an intestinal microbiome signature that persists after successful dieting in obese mice and contributes to faster weight regain upon re-exposure to an obesity-promoting diet, and that transmits the altered weight regain phenotype to non-dieting mice.
Christoph A. Thaiss, Shlomik Itav, Daphna Rothschild et al.
Early dissemination seeds metastasis in breast cancer
Two related papers show that cells disseminated from malignant lesions at early time points during tumorigenesis can contribute to metastases at distant organs and provide insights into the molecular basis of dissemination.
Hedayatollah Hosseini, Milan M. S. Obradović, Martin Hoffmann et al.
Letters  
 
 
 
Evidence for a spinon Fermi surface in a triangular-lattice quantum-spin-liquid candidate
A spin excitation continuum across a large region of the Brillouin zone that persists at near-zero temperatures provides evidence for a quantum spin liquid state with a spinon Fermi surface in YbMgGaO4.
Yao Shen, Yao-Dong Li, Hongliang Wo et al.
Self-assembly of tetravalent Goldberg polyhedra from 144 small components
Graph theory is used to guide the self-assembly of a complex consisting of 48 palladium ions and 96 ligands, with the topology of a tetravalent Goldberg polyhedron.
Daishi Fujita, Yoshihiro Ueda, Sota Sato et al.
Water balance creates a threshold in soil pH at the global scale
There is an abrupt transition from alkaline to acid soil pH when mean annual precipitation exceeds mean annual potential evapotranspiration, demonstrating that climate creates a nonlinear pattern in soil solution chemistry at the global scale.
E. W. Slessarev, Y. Lin, N. L. Bingham et al.
Broadening not strengthening of the Agulhas Current since the early 1990s
The Agulhas Current has not intensified since the early 1990s, but has instead broadened as a result of more eddy activity.
Lisa M. Beal, Shane Elipot
Integrin-YAP/TAZ-JNK cascade mediates atheroprotective effect of unidirectional shear flow
YAP and TAZ, effectors of the Hippo pathway, sense mechanical forces generated by blood flow and play a role in atherosclerosis pathogenesis.
Li Wang, Jiang-Yun Luo, Bochuan Li et al.
NLRC3 is an inhibitory sensor of PI3K–mTOR pathways in cancer
Mice deficient in the protein NLRC3 are highly prone to colitis and tumour development in the colon as NLRC3 suppresses the activation of mTOR signalling pathways that help drive tumorigenesis.
Rajendra Karki, Si Ming Man, R. K. Subbarao Malireddi et al.
mRNA quality control is bypassed for immediate export of stress-responsive transcripts
Heat shock drives the expression of transcripts that bypass mRNA quality control for direct export and translation, allowing cells to survive extreme situations at the cost of accuracy.
Gesa Zander, Alexandra Hackmann, Lysann Bender et al.
Near-atomic-resolution cryo-EM analysis of the Salmonella T3S injectisome basal body
The authors report the structure of the assembled membrane spanning ring forming proteins of the Salmonella Typhimurium injectisome basal body, including the first atomic structure of a member of the secretin family of outer-membrane pores.
L. J. Worrall, C. Hong, M. Vuckovic et al.
High-resolution crystal structure of the human CB1 cannabinoid receptor
The authors report a 2.6 Å resolution crystal structure of the human CB1 cannabinoid receptor trapped in the inactive conformation and bound to the antagonist taranabant.
Zhenhua Shao, Jie Yin, Karen Chapman et al.
Chemical intervention in plant sugar signalling increases yield and resilience
Treatment with signalling precursors of trehalose-6-phosphate allows light-triggered release of trehalose-6-phosphate in Arabidopsis thaliana and increases the yield and drought resistance of spring wheat (Triticum aestivum).
Cara A. Griffiths, Ram Sagar, Yiqun Geng et al.
Mechanism of early dissemination and metastasis in Her2+ mammary cancer
Two related papers show that cells disseminated from malignant lesions at early time points during tumorigenesis can contribute to metastases at distant organs and provide insights into the molecular basis of dissemination.
Kathryn L. Harper, Maria Soledad Sosa, David Entenberg et al.
Structure of RNA polymerase I transcribing ribosomal DNA genes
Structures of budding yeast RNA polymerase I in a catalytically active conformation are presented and confirmed by visualizing processive transcription along ribosomal DNA genes; they support a general model for transcription elongation in which contracted and expanded polymerase conformations are associated with active and inactive states, respectively.
Simon Neyer, Michael Kunz, Christian Geiss et al.
 
 
Careers & Jobs
 
Feature  
 
 
 
Science advocacy: Get involved
Chris Woolston
Futures  
 
 
Breathe the last bits of air
Endgame.
Emily McCosh
 
 
 
 
 

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