Wednesday, December 7, 2016

Nature contents: 08 December 2016

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  journal cover  
Nature Volume 540 Issue 7632
 
This Week  
 
 
Editorials  
 
 
 
Reform regulations to make pet clinical trials easier
Trials in animals can aid both veterinary and human medicine, but complicated rules can stifle them.
Get water governance on the global agenda
Human activity causes most changes in Earth’s surface water, so policies for its governance must become a priority.
Turn children on to science through reading
Books have the power to trigger a lifelong urge to know more about the world and its environs.
 
 
A*STAR Research - Highlighting the best of research at the Agency for Science, Technology and Research (A*STAR), Singapore's premier research organization.
 
Aging: Searching for a cure for frailty | Cancer genetics: Facing off a deadly mutation | Metabolic disorders: A step closer to stem cell treatments.

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World View  
 
 
 
Take the time and effort to correct misinformation
Scientists should challenge online falsehoods and inaccuracies — and harness the collective power of the Internet to fight back, argues Phil Williamson.
 
Seven Days  
 
 
 
Military research, arXiv's overhaul and four new element names
The week in science: 2–8 December 2016
Research Highlights  
 
 
 
Palaeoanthropology: Early burials had mutilation rituals | Condensed-matter physics: Frozen bismuth superconducts | Vaccines: New way to tame a virus | Microbiology: Gut bacteria linked to Parkinson's | Cancer: Relapse-inducing cancer cells found | Anthropology: Lucy was a climber | Glaciology: Antarctica warmed up fast in the past | Quantum physics: Photons in two colours at once | Genetics: Heart-health variants found
 
 


Lithium-ion batteries are efficient energy storage devices that have transformed personal electronics. However, questions still remain as to whether they will realise their full market potential. Find out more about the key challenges facing their development here.
 
 
News in Focus
 
Europe’s first Mars rover gets funding — despite crash of test craft
But the European Space Agency's participation in a mission to deflect an asteroid moon is now cancelled.
Elizabeth Gibney
  North America’s oldest mummy returned to US tribe after genome sequencing
DNA proves Native American roots of 10,600-year-old skeleton.
Ewen Callaway
Mexico proposal to ban human-embryo research would stifle science
Researchers in the country have only just started using homegrown human embryonic stem cells
Sara Reardon
  Battle over US overtime pay rules leaves many postdocs in limbo
Institutions struggle to respond after court blocks regulations that would have increased wages for junior researchers.
Anna Nowogrodzki
Deforestation spikes in Brazilian Amazon
Illegal land clearing hits highest levels since 2008 as environmental policies come under attack.
Jeff Tollefson
  Researchers baffled by nationalist surge
Economic woes wrought by globalization are only part of the cause.
Jeff Tollefson
Features  
 
 
 
The painful history of St Helena’s freed slaves
How ancient DNA could help to unlock the mysteries of one of humanity’s darkest chapters.
Ewen Callaway
Multimedia  
 
 
Nature Podcast: 08 December 2016
This week, the benefits of randomness, correcting brain waves soothes Alzheimer’s, and the DNA of liberated slaves.
Correction  
 
 
Correction
 
 
Comment
 
Four steps to precision public health
Better surveillance data and analyses are urgently needed to control disease in the developing world, argue Scott F. Dowell, David Blazes and Susan Desmond-Hellmann.
Scott F. Dowell, David Blazes, Susan Desmond-Hellmann
Involve social scientists in defining the Anthropocene
The causes of Earth's transition are human and social, write Erle Ellis and colleagues, so scholars from those disciplines must be included in its formalization.
Erle Ellis, Mark Maslin, Nicole Boivin et al.
Books and Arts  
 
 
 
Tales of wonder
A bedtime story can ignite a lifelong love of science. Nature editors riffle through shelves and memories for favourites old and new.
Correspondence  
 
 
 
Brazil: Urgent action on Cerrado extinctions
Bernardo B. N. Strassburg, Agnieszka Latawiec, Andrew Balmford
  Theoretical physics: Fermi's predictions live on
Philip Yock
Performance metrics: Forge a clearer path for technical careers
Michael Ball, Rob Hardwick, Kelly Vere
  US prizewinners: Nobel launchpad is immaterial
Robert Root-Bernstein
Quantum physics: Focus like a lens, not like a laser
Richard Rhodes
 
 
 
Specials
 
Outlook: Regenerative medicine  
 
 
 
Regenerative medicine
Herb Brody
  Timeline: Regrowing the body
Cassandra Willyard
Neuroscience: New nerves for old
Katherine Bourzac
  Perspective: Work with, not against, biology
Stephen Badylak
Technology: The promise of printing
Neil Savage
  Animal models: Unlock your inner salamander
Sujata Gupta
Diabetes: Encapsulating the problem
Elie Dolgin
  Regulation: Rewriting the regenerative rulebook
Michael Eisenstein
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Research
 
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Pharmacology: Inside-out receptor inhibition
Structures of two chemokine receptor proteins in complex with small molecules reveal a previously unknown binding pocket that could be a drug target for treating a range of diseases involving this receptor family.
Cancer: A gene-expression profile for leukaemia
Can simple genetic risk profiles be identified for complex diseases? The development of a gene-expression profile for acute myeloid leukaemia suggests that they can, and that they may improve prognosis prediction.
Cardiovascular Disease: A turbulent path to plaque formation
Plaque deposits often occur in curved arterial regions with turbulent blood flow. Endothelial cells have been found to respond to blood flow through a previously unidentified signalling pathway that affects plaque build-up.
Hydrology: The dynamics of Earth's surface water
High-resolution satellite mapping of Earth's surface water during the past 32 years reveals changes in the planet's water systems, including the influence of natural cycles and human activities.
Electric-field-stimulated protein mechanics
A new method in which strong electric fields are applied to a protein crystal while collecting time-resolved X-ray diffraction patterns is able to follow the mechanical motions of all the constituent atoms, with implications for molecular biology and drug discovery.
Targeting metastasis-initiating cells through the fatty acid receptor CD36
Human oral carcinoma cells expressing high levels of the fatty acid receptor CD36 initiate metastasis in mouse models, and metastasis is increased by palmitic acid or a fatty diet and decreased by blockade of CD36.
Receptor usage dictates HIV-1 restriction by human TRIM5α in dendritic cell subsets
Human TRIM5α restricts HIV-1 infection of Langerhans cells through Langerin-dependent autophagy pathway.
High-resolution mapping of global surface water and its long-term changes
A freely available dataset produced from three million Landsat satellite images reveals substantial changes in the distribution of global surface water over the past 32 years and their causes, from climate change to human actions.
Structure and regulation of the chromatin remodeller ISWI
The crystal structures of ISWI, the catalytic subunit of several chromatin remodelling complexes, and its complex with a histone H4 peptide are reported.
A 17-gene stemness score for rapid determination of risk in acute leukaemia
A rapid gene signature test (LSC17) that captures stem cell expression programs in acute myeloid leukaemia patients at diagnosis is associated with therapy response and survival, facilitating initial treatment stratification.
Integrin-YAP/TAZ-JNK cascade mediates atheroprotective effect of unidirectional shear flow
YAP and TAZ, effectors of the Hippo pathway, sense mechanical forces generated by blood flow and play a role in atherosclerosis pathogenesis.
Structure of CC chemokine receptor 2 with orthosteric and allosteric antagonists
The crystal structure of CCR2 chemokine receptor in a complex with two different antagonists—one orthosteric the other allosteric—which functionally cooperate to inhibit CCR2.
Intracellular allosteric antagonism of the CCR9 receptor
The crystal structure of the CCR9 chemokine receptor in complex with vercirnon at 2.8 Å resolution.
Genome-wide changes in lncRNA, splicing, and regional gene expression patterns in autism
Gene expression analysis in brain tissue from individuals with and without autism spectrum disorder (ASD) suggests that the transcription factor SOX5 contributes to an ASD-associated reduction in transcriptional differences between brain areas and indicates that common transcriptomic changes occur in different forms of ASD.
Evidence for a spinon Fermi surface in a triangular-lattice quantum-spin-liquid candidate
A spin excitation continuum across a large region of the Brillouin zone that persists at near-zero temperatures provides evidence for a quantum spin liquid state with a spinon Fermi surface in YbMgGaO4.
Splicing factor 1 modulates dietary restriction and TORC1 pathway longevity in C. elegans
Precursor mRNA splicing homeostasis is a biomarker and predictor of life expectancy in Caenorhabditis elegans and defects in global pre-mRNA splicing associated with age are reduced by dietary restriction via splicing factor 1.
Structural basis for ArfA–RF2-mediated translation termination on mRNAs lacking stop codons
Mechanistic insights into the alternative translation termination by ArfA and RF2
Erratum: Transplanted embryonic neurons integrate into adult neocortical circuits
Corrigendum: Mitochondrial and nuclear DNA matching shapes metabolism and healthy ageing
Corrigendum: Linking high harmonics from gases and solids
News and Views  
 
 
 
Astrophysics: Elemental abundances across cosmic time
Chiaki Kobayashi
Neurodegenerative Disorders: Neural synchronization in Alzheimer's disease
Liviu Aron, Bruce A. Yankner
In Retrospect: Forty years of linking orbits to ice ages
Mark Maslin
 

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Biomedicine: Replacing the cell's power plants
Eric A. Shoubridge
 
Climate science: The history of Greenland's ice
Pierre-Henri Blard, Guillaume Leduc, Neil Glasser
Virology: A parasite's parasite saves host's neighbours
Eugene V. Koonin, Mart Krupovic
 
50 & 100 Years Ago
Stem cells: Aspiring to naivety
Ido Sagi, Nissim Benvenisty
 
Reviews  
 
 
 
Certified randomness in quantum physics
Quantum technology enables new methods for generating of randomness with minimal assumptions, certified by the violation of a Bell inequality, which opens up new theoretical and experimental research directions and leads to new challenges.
Antonio Acín, Lluis Masanes
Safeguarding pollinators and their values to human well-being
Wild and managed pollinators are threatened by pressures such as environmental changes and pesticides, leading to risks for pollinator-dependent crop production, meaning more research and better policies are needed to safeguard pollinators and their services.
Simon G. Potts, Vera Imperatriz-Fonseca, Hien T. Ngo et al.
Articles  
 
 
 
Gamma frequency entrainment attenuates amyloid load and modifies microglia
Mouse models of Alzheimer’s disease show reduced, behaviourally driven gamma oscillations before the onset of plaque formation or cognitive decline; driving neurons to oscillate at gamma frequency (40 Hz) reduces levels of amyloid-β peptides.
Hannah F. Iaccarino, Annabelle C. Singer, Anthony J. Martorell et al.
m6A modulates neuronal functions and sex determination in Drosophila
One of the most abundant modifications found in messenger RNAs is N6-methyladenosine (m6A); here, this modification is shown to alter gene expression during sex determination and affect neuronal functions and behaviour in Drosophila via the m6A reader protein YT521-B.
Tina Lence, Junaid Akhtar, Marc Bayer et al.
S-2-hydroxyglutarate regulates CD8+ T-lymphocyte fate
S-2-hydroxyglutarate produced by CD8+ T cells under hypoxic conditions affects locus-specific histone and DNA methylation patterns, which enhances T-cell proliferation, survival and recall responses.
Petros A. Tyrakis, Asis Palazon, David Macias et al.
Letters  
 
 
 
Greenland was nearly ice-free for extended periods during the Pleistocene
Measurements of cosmic-ray-produced 10Be and 26Al in a bedrock core from beneath the summit of the Greenland Ice Sheet show that Greenland was nearly ice-free for extended periods under Pleistocene climate forcing.
Joerg M. Schaefer, Robert C. Finkel, Greg Balco et al.
Microcins mediate competition among Enterobacteriaceae in the inflamed gut
Certain commensal enterobacteria secrete small proteins called microcins that suppress the growth of other bacteria in the inflamed gut, conferring an intra- and interspecies competitive advantage.
Martina Sassone-Corsi, Sean-Paul Nuccio, Henry Liu et al.
A massive, quiescent, population II galaxy at a redshift of 2.1
The ratio of magnesium to iron abundance is measured for a massive quiescent galaxy at a redshift of 2.1, corresponding to when the Universe was three billion years old.
Mariska Kriek, Charlie Conroy, Pieter G. van Dokkum et al.
Dynamics of a seafloor-spreading episode at the East Pacific Rise
Seismic observations clarify the roles of magma pressure and tectonic stress in the development of seafloor spreading during the most recent eruption at the East Pacific Rise.
Yen Joe Tan, Maya Tolstoy, Felix Waldhauser et al.
Mitochondrial replacement in human oocytes carrying pathogenic mitochondrial DNA mutations
Analysis of mitochondrial replacement therapy shows, even with efficient mutant mitochondrial DNA replacement and maintenance in embryonic stem cells, a gradual loss of donor mitochondrial DNA in some lines owing to a polymorphism in the D-loop, potentially causing preferential replication of specific mitochondrial DNA haplotypes.
Eunju Kang, Jun Wu, Nuria Marti Gutierrez et al.
Intronic polyadenylation of PDGFRα in resident stem cells attenuates muscle fibrosis
Changes in intronic polyadenylation of the Pdgfra in fibro/adipogenic progenitors lead to increased expression of a shorter variant with a truncated kinase domain, which modulates pro-fibrotic pathways to reduce tissue fibrosis in muscle.
Alisa A. Mueller, Cindy T. van Velthoven, Kathryn D. Fukumoto et al.
Host genome integration and giant virus-induced reactivation of the virophage mavirus
Endogenous viral elements found in a marine protozoan have a function in defence against infection by giant viruses.
Matthias G. Fischer, Thomas Hackl
Capturing pairwise and multi-way chromosomal conformations using chromosomal walks
A conformation capture sequencing method is developed to link multiple genomic loci into three-dimensional proximity chains called chromosomal walks (C-walks), adding to our understanding of how higher-order chromosomal structures participate in genome regulation.
Pedro Olivares-Chauvet, Zohar Mukamel, Aviezer Lifshitz et al.
m6A potentiates Sxl alternative pre-mRNA splicing for robust Drosophila sex determination
Two complementary studies describe how the pervasive N 6-methyladenosine modification in mRNA can affect Drosophila sex determination, neuronal function and behaviour.
Irmgard U. Haussmann, Zsuzsanna Bodi, Eugenio Sanchez-Moran et al.
Ad26/MVA therapeutic vaccination with TLR7 stimulation in SIV-infected rhesus monkeys
A combination of therapeutic vaccination with Ad26/MVA and stimulation of innate immune responses leads to improved virologic control and delayed rebound in SIV-infected macaques following discontinuation of antiretroviral therapy.
Erica N. Borducchi, Crystal Cabral, Kathryn E. Stephenson et al.
A persistent and dynamic East Greenland Ice Sheet over the past 7.5 million years
10Be and 26Al isotopic evidence in quartz sand from the seafloor shows that a dynamic East Greenland Ice Sheet has existed for the past 7.5 million years.
Paul R. Bierman, Jeremy D. Shakun, Lee B. Corbett et al.
Land-use intensification causes multitrophic homogenization of grassland communities
Analysis of a large grassland biodiversity dataset shows that increases in local land-use intensity cause biotic homogenization at landscape scale across microbial, plant and animal groups, both above- and belowground, that is largely independent of changes in local diversity.
Martin M. Gossner, Thomas M. Lewinsohn, Tiemo Kahl et al.
Designed proteins induce the formation of nanocage-containing extracellular vesicles
Autonomously produced hybrid biological nanomaterials termed ‘enveloped protein nanocages’ incorporate features for membrane binding, self-assembly, and ESCRT recruitment for cellular release.
Jörg Votteler, Cassandra Ogohara, Sue Yi et al.
 
 
Careers & Jobs
 
Feature  
 
 
 
Mentoring awards: Leading by example
Philip Campbell
Q&AS  
 
 
 
Trade talk: Drug referee
Jack Leeming
Futures  
 
 
Between two voices talking
Brief encounter.
Laurence Raphael Brothers
 
 
 
 
 

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