Tuesday, October 20, 2015

The ISME Journal - Table of Contents alert Volume 9 Issue 11

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The ISME Journal

TABLE OF CONTENTS

Volume 9, Issue 11 (November 2015)

In this issue
Mini-review
Original Articles
Short Communication

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Mini-review

Top

Volatile affairs in microbial interactions

Ruth Schmidt, Viviane Cordovez, Wietse de Boer, Jos Raaijmakers and Paolina Garbeva

ISME J 2015 9: 2329-2335; advance online publication, May 29, 2015; 10.1038/ismej.2015.42

Abstract | Full Text

Original Articles

Top

SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment OPEN

Özge Eyice, Motonobu Namura, Yin Chen, Andrew Mead, Siva Samavedam and Hendrik Schäfer

ISME J 2015 9: 2336-2348; advance online publication, March 27, 2015; 10.1038/ismej.2015.37

Abstract | Full Text

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

Andrzej Tkacz, Jitender Cheema, Govind Chandra, Alastair Grant and Philip S Poole

ISME J 2015 9: 2349-2359; advance online publication, April 24, 2015; 10.1038/ismej.2015.41

Abstract | Full Text

Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris

Aifen Zhou, Kristina L Hillesland, Zhili He, Wendy Schackwitz, Qichao Tu, Grant M Zane, Qiao Ma, Yuanyuan Qu, David A Stahl, Judy D Wall, Terry C Hazen, Matthew W Fields, Adam P Arkin and Jizhong Zhou

ISME J 2015 9: 2360-2372; advance online publication, April 7, 2015; 10.1038/ismej.2015.45

Abstract | Full Text

Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution

Joran Martijn, Frederik Schulz, Katarzyna Zaremba-Niedzwiedzka, Johan Viklund, Ramunas Stepanauskas, Siv G E Andersson, Matthias Horn, Lionel Guy and Thijs J G Ettema

ISME J 2015 9: 2373-2385; advance online publication, April 7, 2015; 10.1038/ismej.2015.46

Abstract | Full Text

Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton OPEN

Jessica M Labonté, Brandon K Swan, Bonnie Poulos, Haiwei Luo, Sergey Koren, Steven J Hallam, Matthew B Sullivan, Tanja Woyke, K Eric Wommack and Ramunas Stepanauskas

ISME J 2015 9: 2386-2399; advance online publication, April 7, 2015; 10.1038/ismej.2015.48

Abstract | Full Text

Dominance of sulfur-fueled iron oxide reduction in low-sulfate freshwater sediments

Colleen M Hansel, Chris J Lentini, Yuanzhi Tang, David T Johnston, Scott D Wankel and Philip M Jardine

ISME J 2015 9: 2400-2412; advance online publication, April 14, 2015; 10.1038/ismej.2015.50

Abstract | Full Text

Local–global overlap in diversity informs mechanisms of bacterial biogeography

Joshua A Livermore and Stuart E Jones

ISME J 2015 9: 2413-2422; advance online publication, April 7, 2015; 10.1038/ismej.2015.51

Abstract | Full Text

Marked seasonal variation in the wild mouse gut microbiota OPEN

Corinne F Maurice, Sarah CL Knowles, Joshua Ladau, Katherine S Pollard, Andy Fenton, Amy B Pedersen and Peter J Turnbaugh

ISME J 2015 9: 2423-2434; advance online publication, May 29, 2015; 10.1038/ismej.2015.53

Abstract | Full Text

Non-symbiotic Bradyrhizobium ecotypes dominate North American forest soils

David VanInsberghe, Kendra R Maas, Erick Cardenas, Cameron R Strachan, Steven J Hallam and William W Mohn

ISME J 2015 9: 2435-2441; advance online publication, April 24, 2015; 10.1038/ismej.2015.54

Abstract | Full Text

The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign

Michaela M Salcher, Stefan M Neuenschwander, Thomas Posch and Jakob Pernthaler

ISME J 2015 9: 2442-2453; advance online publication, May 5, 2015; 10.1038/ismej.2015.55

Abstract | Full Text

Altitudinal patterns of diversity and functional traits of metabolically active microorganisms in stream biofilms

Linda Wilhelm, Katharina Besemer, Lena Fragner, Hannes Peter, Wolfram Weckwerth and Tom J Battin

ISME J 2015 9: 2454-2464; advance online publication, May 15, 2015; 10.1038/ismej.2015.56

Abstract | Full Text

Forest harvesting reduces the soil metagenomic potential for biomass decomposition

Erick Cardenas, J M Kranabetter, Graeme Hope, Kendra R Maas, Steven Hallam and William W Mohn

ISME J 2015 9: 2465-2476; advance online publication, April 24, 2015; 10.1038/ismej.2015.57

Abstract | Full Text

Temporal variation overshadows the response of leaf litter microbial communities to simulated global change

Kristin L Matulich, Claudia Weihe, Steven D Allison, Anthony S Amend, Renaud Berlemont, Michael L Goulden, Sarah Kimball, Adam C Martiny and Jennifer BH Martiny

ISME J 2015 9: 2477-2489; advance online publication, May 15, 2015; 10.1038/ismej.2015.58

Abstract | Full Text

Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes

Bing Li, Ying Yang, Liping Ma, Feng Ju, Feng Guo, James M Tiedje and Tong Zhang

ISME J 2015 9: 2490-2502; advance online publication, April 28, 2015; 10.1038/ismej.2015.59

Abstract | Full Text

Calcite-accumulating large sulfur bacteria of the genus Achromatium in Sippewissett Salt Marsh

Verena Salman, Tingting Yang, Tom Berben, Frieder Klein, Esther Angert and Andreas Teske

ISME J 2015 9: 2503-2514; advance online publication, April 24, 2015; 10.1038/ismej.2015.62

Abstract | Full Text

Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

Chris CR Smith, Lisa K Snowberg, J Gregory Caporaso, Rob Knight and Daniel I Bolnick

ISME J 2015 9: 2515-2526; advance online publication, April 24, 2015; 10.1038/ismej.2015.64

Abstract | Full Text

Crustose coralline algal species host distinct bacterial assemblages on their surfaces

Jennifer M Sneed, Raphael Ritson-Williams and Valerie J Paul

ISME J 2015 9: 2527-2536; advance online publication, April 28, 2015; 10.1038/ismej.2015.67

Abstract | Full Text

Short Communication

Top

In situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice OPEN

Christiane Uhlig, Fabian Kilpert, Stephan Frickenhaus, Jessica U Kegel, Andreas Krell, Thomas Mock, Klaus Valentin and Bánk Beszteri

ISME J 2015 9: 2537-2540; advance online publication, April 17, 2015; 10.1038/ismej.2015.43

Abstract | Full Text

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