TABLE OF CONTENTS
|  |  |  | Volume 9, Issue 11 (November 2015) |  | In this issue Mini-review Original Articles Short Communication
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Twitter | | | |  |  | Mini-review | Top |  | Volatile affairs in microbial interactionsRuth Schmidt, Viviane Cordovez, Wietse de Boer, Jos Raaijmakers and Paolina Garbeva ISME J 2015 9: 2329-2335; advance online publication, May 29, 2015; 10.1038/ismej.2015.42 Abstract | Full Text |  | Original Articles | Top |  | SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment OPENÖzge Eyice, Motonobu Namura, Yin Chen, Andrew Mead, Siva Samavedam and Hendrik Schäfer ISME J 2015 9: 2336-2348; advance online publication, March 27, 2015; 10.1038/ismej.2015.37 Abstract | Full Text |  |  |  | Stability and succession of the rhizosphere microbiota depends upon plant type and soil compositionAndrzej Tkacz, Jitender Cheema, Govind Chandra, Alastair Grant and Philip S Poole ISME J 2015 9: 2349-2359; advance online publication, April 24, 2015; 10.1038/ismej.2015.41 Abstract | Full Text |  |  |  | Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgarisAifen Zhou, Kristina L Hillesland, Zhili He, Wendy Schackwitz, Qichao Tu, Grant M Zane, Qiao Ma, Yuanyuan Qu, David A Stahl, Judy D Wall, Terry C Hazen, Matthew W Fields, Adam P Arkin and Jizhong Zhou ISME J 2015 9: 2360-2372; advance online publication, April 7, 2015; 10.1038/ismej.2015.45 Abstract | Full Text |  |  |  | Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolutionJoran Martijn, Frederik Schulz, Katarzyna Zaremba-Niedzwiedzka, Johan Viklund, Ramunas Stepanauskas, Siv G E Andersson, Matthias Horn, Lionel Guy and Thijs J G Ettema ISME J 2015 9: 2373-2385; advance online publication, April 7, 2015; 10.1038/ismej.2015.46 Abstract | Full Text |  |  |  | Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton OPENJessica M Labonté, Brandon K Swan, Bonnie Poulos, Haiwei Luo, Sergey Koren, Steven J Hallam, Matthew B Sullivan, Tanja Woyke, K Eric Wommack and Ramunas Stepanauskas ISME J 2015 9: 2386-2399; advance online publication, April 7, 2015; 10.1038/ismej.2015.48 Abstract | Full Text |  |  |  | Dominance of sulfur-fueled iron oxide reduction in low-sulfate freshwater sedimentsColleen M Hansel, Chris J Lentini, Yuanzhi Tang, David T Johnston, Scott D Wankel and Philip M Jardine ISME J 2015 9: 2400-2412; advance online publication, April 14, 2015; 10.1038/ismej.2015.50 Abstract | Full Text |  |  |  | Local–global overlap in diversity informs mechanisms of bacterial biogeographyJoshua A Livermore and Stuart E Jones ISME J 2015 9: 2413-2422; advance online publication, April 7, 2015; 10.1038/ismej.2015.51 Abstract | Full Text |  |  |  | Marked seasonal variation in the wild mouse gut microbiota OPENCorinne F Maurice, Sarah CL Knowles, Joshua Ladau, Katherine S Pollard, Andy Fenton, Amy B Pedersen and Peter J Turnbaugh ISME J 2015 9: 2423-2434; advance online publication, May 29, 2015; 10.1038/ismej.2015.53 Abstract | Full Text |  |  |  | Non-symbiotic Bradyrhizobium ecotypes dominate North American forest soilsDavid VanInsberghe, Kendra R Maas, Erick Cardenas, Cameron R Strachan, Steven J Hallam and William W Mohn ISME J 2015 9: 2435-2441; advance online publication, April 24, 2015; 10.1038/ismej.2015.54 Abstract | Full Text |  |  |  | The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaignMichaela M Salcher, Stefan M Neuenschwander, Thomas Posch and Jakob Pernthaler ISME J 2015 9: 2442-2453; advance online publication, May 5, 2015; 10.1038/ismej.2015.55 Abstract | Full Text |  |  |  | Altitudinal patterns of diversity and functional traits of metabolically active microorganisms in stream biofilmsLinda Wilhelm, Katharina Besemer, Lena Fragner, Hannes Peter, Wolfram Weckwerth and Tom J Battin ISME J 2015 9: 2454-2464; advance online publication, May 15, 2015; 10.1038/ismej.2015.56 Abstract | Full Text |  |  |  | Forest harvesting reduces the soil metagenomic potential for biomass decompositionErick Cardenas, J M Kranabetter, Graeme Hope, Kendra R Maas, Steven Hallam and William W Mohn ISME J 2015 9: 2465-2476; advance online publication, April 24, 2015; 10.1038/ismej.2015.57 Abstract | Full Text |  |  |  | Temporal variation overshadows the response of leaf litter microbial communities to simulated global changeKristin L Matulich, Claudia Weihe, Steven D Allison, Anthony S Amend, Renaud Berlemont, Michael L Goulden, Sarah Kimball, Adam C Martiny and Jennifer BH Martiny ISME J 2015 9: 2477-2489; advance online publication, May 15, 2015; 10.1038/ismej.2015.58 Abstract | Full Text |  |  |  | Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genesBing Li, Ying Yang, Liping Ma, Feng Ju, Feng Guo, James M Tiedje and Tong Zhang ISME J 2015 9: 2490-2502; advance online publication, April 28, 2015; 10.1038/ismej.2015.59 Abstract | Full Text |  |  |  | Calcite-accumulating large sulfur bacteria of the genus Achromatium in Sippewissett Salt MarshVerena Salman, Tingting Yang, Tom Berben, Frieder Klein, Esther Angert and Andreas Teske ISME J 2015 9: 2503-2514; advance online publication, April 24, 2015; 10.1038/ismej.2015.62 Abstract | Full Text |  |  |  | Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiotaChris CR Smith, Lisa K Snowberg, J Gregory Caporaso, Rob Knight and Daniel I Bolnick ISME J 2015 9: 2515-2526; advance online publication, April 24, 2015; 10.1038/ismej.2015.64 Abstract | Full Text |  |  |  | Crustose coralline algal species host distinct bacterial assemblages on their surfacesJennifer M Sneed, Raphael Ritson-Williams and Valerie J Paul ISME J 2015 9: 2527-2536; advance online publication, April 28, 2015; 10.1038/ismej.2015.67 Abstract | Full Text |  | Short Communication | Top |  | In situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice OPENChristiane Uhlig, Fabian Kilpert, Stephan Frickenhaus, Jessica U Kegel, Andreas Krell, Thomas Mock, Klaus Valentin and Bánk Beszteri ISME J 2015 9: 2537-2540; advance online publication, April 17, 2015; 10.1038/ismej.2015.43 Abstract | Full Text |  |  |  |  |  |  |  |  |  |  | Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. 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