The ISME Journal - Table of Contents alert Volume 9 Issue 5

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TABLE OF CONTENTS Volume 9, Issue 5 (May 2015) In this issue Perspective Original Articles Short Communications Errata Also new AOP Sign up for e-alerts Recommend to your library Web feed Subscribe Perspective Top The role of community and population ecology in applying mycorrhizal fungi for improved food security OPEN Alia Rodriguez and Ian R Sanders ISME J 2015 9: 1053-1061; advance online publication, October 31, 2014; 10.1038/ismej.2014.207 Abstract | Full Text Original Articles Top Differential contributions of ammonia oxidizers and nitrite oxidizers to nitrification in four paddy soils OPEN Baozhan Wang, Jun Zhao, Zhiying Guo, Jing Ma, Hua Xu and Zhongjun Jia ISME J 2015 9: 1062-1075; advance online publication, October 10, 2014; 10.1038/ismej.2014.194 Abstract | Full Text Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities OPEN Chris L Dupont, John P McCrow, Ruben Valas, Ahmed Moustafa, Nathan Walworth, Ursula Goodenough, Robyn Roth, Shane L Hogle, Jing Bai, Zackary I Johnson, Elizabeth Mann, Brian Palenik, Katherine A Barbeau, J Craig Venter and Andrew E Allen ISME J 2015 9: 1076-1092; advance online publication, October 21, 2014; 10.1038/ismej.2014.198 Abstract | Full Text Denitrification versus respiratory ammonification: environmental controls of two competing dissimilatory NO3−/NO2− reduction pathways in Shewanella loihica strain PV-4 Sukhwan Yoon, Claribel Cruz-García, Robert Sanford, Kirsti M Ritalahti and Frank E Löffler ISME J 2015 9: 1093-1104; advance online publication, October 31, 2014; 10.1038/ismej.2014.201 Abstract | Full Text Origin and ecological selection of core and food-specific bacterial communities associated with meat and seafood spoilage Stéphane Chaillou, Aurélie Chaulot-Talmon, Hélène Caekebeke, Mireille Cardinal, Souad Christieans, Catherine Denis, Marie Hélène Desmonts, Xavier Dousset, Carole Feurer, Erwann Hamon, Jean-Jacques Joffraud, Stéphanie La Carbona, Françoise Leroi, Sabine Leroy, Sylvie Lorre, Sabrina Macé, Marie-France Pilet, Hervé Prévost, Marina Rivollier, Dephine Roux, Régine Talon, Monique Zagorec and Marie-Christine Champomier-Vergès ISME J 2015 9: 1105-1118; advance online publication, October 21, 2014; 10.1038/ismej.2014.202 Abstract | Full Text Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response Igor Y Oshkin, David AC Beck, Andrew E Lamb, Veronika Tchesnokova, Gabrielle Benuska, Tami L McTaggart, Marina G Kalyuzhnaya, Svetlana N Dedysh, Mary E Lidstrom and Ludmila Chistoserdova ISME J 2015 9: 1119-1129; advance online publication, October 21, 2014; 10.1038/ismej.2014.203 Abstract | Full Text Gene expression analysis of E. coli strains provides insights into the role of gene regulation in diversification Marius Vital, Benli Chai, Bjørn Østman, James Cole, Konstantinos T Konstantinidis and James M Tiedje ISME J 2015 9: 1130-1140; advance online publication, October 24, 2014; 10.1038/ismej.2014.204 Abstract | Full Text Phenotypic plasticity in heterotrophic marine microbial communities in continuous cultures Sara Beier, Adam R Rivers, Mary Ann Moran and Ingrid Obernosterer ISME J 2015 9: 1141-1151; advance online publication, November 14, 2014; 10.1038/ismej.2014.206 Abstract | Full Text Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases OPEN Albert Leopold Müller, Kasper Urup Kjeldsen, Thomas Rattei, Michael Pester and Alexander Loy ISME J 2015 9: 1152-1165; advance online publication, October 24, 2014; 10.1038/ismej.2014.208 Abstract | Full Text Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence Hisaya Kojima, Yoshitoshi Ogura, Nozomi Yamamoto, Tomoaki Togashi, Hiroshi Mori, Tomohiro Watanabe, Fumiko Nemoto, Ken Kurokawa, Tetsuya Hayashi and Manabu Fukui ISME J 2015 9: 1166-1176; advance online publication, October 24, 2014; 10.1038/ismej.2014.209 Abstract | Full Text Distinct soil microbial diversity under long-term organic and conventional farming OPEN Martin Hartmann, Beat Frey, Jochen Mayer, Paul Mäder and Franco Widmer ISME J 2015 9: 1177-1194; advance online publication, October 31, 2014; 10.1038/ismej.2014.210 Abstract | Full Text Physiology and evolution of nitrate acquisition in Prochlorococcus Paul M Berube, Steven J Biller, Alyssa G Kent, Jessie W Berta-Thompson, Sara E Roggensack, Kathryn H Roache-Johnson, Marcia Ackerman, Lisa R Moore, Joshua D Meisel, Daniel Sher, Luke R Thompson, Lisa Campbell, Adam C Martiny and Sallie W Chisholm ISME J 2015 9: 1195-1207; advance online publication, October 28, 2014; 10.1038/ismej.2014.211 Abstract | Full Text Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems OPEN Delphine Lallias, Jan G Hiddink, Vera G Fonseca, John M Gaspar, Way Sung, Simon P Neill, Natalie Barnes, Tim Ferrero, Neil Hall, P John D Lambshead, Margaret Packer, W Kelley Thomas and Simon Creer ISME J 2015 9: 1208-1221; advance online publication, November 25, 2014; 10.1038/ismej.2014.213 Abstract | Full Text From deep-sea volcanoes to human pathogens: a conserved quorum-sensing signal in Epsilonproteobacteria Ileana Pérez-Rodríguez, Marie Bolognini, Jessica Ricci, Elisabetta Bini and Costantino Vetriani ISME J 2015 9: 1222-1234; advance online publication, November 14, 2014; 10.1038/ismej.2014.214 Abstract | Full Text Evolution of species interactions determines microbial community productivity in new environments OPEN Francesca Fiegna, Alejandra Moreno-Letelier, Thomas Bell and Timothy G Barraclough ISME J 2015 9: 1235-1245; advance online publication, November 11, 2014; 10.1038/ismej.2014.215 Abstract | Full Text Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age Jennifer C Stearns, Carla J Davidson, Suzanne McKeon, Fiona J Whelan, Michelle E Fontes, Anthony B Schryvers, Dawn M E Bowdish, James D Kellner and Michael G Surette ISME J 2015 9: 1246-1259; advance online publication, January 9, 2015; 10.1038/ismej.2014.250 Abstract | Full Text Short Communications Top Intra- and inter-generic transfer of pathogenicity island-encoded virulence genes by cos phages John Chen, Nuria Carpena, Nuria Quiles-Puchalt, Geeta Ram, Richard P Novick and José R Penadés ISME J 2015 9: 1260-1263; advance online publication, October 14, 2014; 10.1038/ismej.2014.187 Abstract | Full Text Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone OPEN Marcia Astorga-Eló, Salvador Ramírez-Flandes, Edward F DeLong and Osvaldo Ulloa ISME J 2015 9: 1264-1267; advance online publication, February 20, 2015; 10.1038/ismej.2015.21 Abstract | Full Text Errata Top Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age ISME J 2015 9: 1268; 10.1038/ismej.2015.49 Full Text Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone ISME J 2015 9: 1268; 10.1038/ismej.2015.52 Full Text Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. 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