Wednesday, April 15, 2015

Nature contents: 16 April 2015

If you are unable to see the message below, click here to view.

 
  journal cover  
Nature Volume 520 Issue 7547
 
This Week  
 
 
Editorials  
 
 
 
Close the deal
Science-based evidence and enlightened diplomacy have brought within reach a historic opportunity for nuclear détente with Iran. It must be seized.
Numbers matter
Researchers need help in making the statistical power of animal experiments clear.
Announcement: Time to tackle cells’ mistaken identity
 
Advertising.
World View  
 
 
 
Scientists must speak up on fossil-fuel divestment
Alan Rusbridger wants researchers to help convince powerful philanthropic organizations to set an example and stop propelling carbon emissions.
 
Seven Days  
 
 
 
Seven days: 10–16 April 2015
The week in science: Protests delay telescope construction, Brazil approves GM eucalyptus; and African Centres for Disease Control and Prevention takes shape.
Research Highlights  
 
 
 
Imaging: A 3D map of skin microbes and molecules | Astrophysics: Neutrinos from a galaxy far away | Neuroscience: Brain zap stops electrical fault | Marine science: Fishing drives population decline | Seismology: San Francisco's quake hazard rises | Atmospheric science: Asian pollution hitchhikes south | Microbiology: Downsides of low-dose antibiotics | Molecular pathology: Cancer spreads among clams | Physics: Hot fluids act strangely in space
Social Selection
Scientists share inspiration on Twitter with #IAmAScientistBecause and #BeyondMarieCurie
 
 
Advertising.
 
 
News in Focus
 
UK funders demand strong statistics for animal studies
Move addresses concerns that some experiments are not using enough animals.
Daniel Cressey
  Canadians baulk at reforms to health-research agency
Biomedical-funding revamp threatens to marginalize under-represented researchers.
Sara Reardon
The printed organs coming to a body near you
From kidneys to hands, 3D printers can now churn out made-to-order organs and bones using cells as ‘ink’.
Heidi Ledford
  Iran nuclear deal raises hopes for science
Iranian physicists excited at prospects for a new physics lab and greater collaboration with the rest of the world.
Declan Butler
Leading scientists favour women in tenure-track hiring test
US science and engineering professors preferred female job candidates by two to one.
Boer Deng
  Rule rewrite aims to clean up scientific software
Nature Biotechnology asks peer reviewers to check accessibility of code used in computational studies.
Erika Check Hayden
Features  
 
 
 
Cancer: The Ras renaissance
Thirty years of pursuit have failed to yield a drug to take on one of the deadliest families of cancer-causing proteins. Now some researchers are taking another shot.
Heidi Ledford
Biography of a space telescope: Voices of Hubble
As the venerable space telescope turns 25 this month, key scientists and engineers recount the highs and lows of its stellar career.
Alexandra Witze
 
 
Advertising.
 
 
Comment
 
Astronomy: Hubble's legacy
Twenty-five years after launch, the wild success of the space telescope argues for a new era of bold exploration in the face of tight budgets, says Mario Livio.
Mario Livio
Health: Make precision medicine work for cancer care
To get targeted treatments to more cancer patients pair genomic data with clinical data, and make the information widely accessible, urges Mark A. Rubin.
Mark A. Rubin
Books and Arts  
 
 
 
Data visualization: Mapping the topical space
Rikke Schmidt Kjærgaard applauds a cogent guide to scientific cartography.
Rikke Schmidt Kjærgaard
Books in brief
Barbara Kiser reviews five of the week's best science picks.
Barbara Kiser
Q&A: Geological historian
The first geological map of a nation was made 200 years ago by British surveyor William Smith; the rediscovery of a first-edition copy in the archives of the Geological Society of London was announced last month (see go.nature.com/oogpht). As researchers gather for a conference to celebrate the anniversary of the 1815 chart of England and Wales, John Henry, chair of the society's history group, talks about the map and its pioneering creator.
Alexandra Witze
Correspondence  
 
 
 
Romanian physics: Is a mega-project the ELI in the room?
Radu Silaghi-Dumitrescu
  Antibodies: validate recombinants once
Andrew M. Bradbury, Andreas Plückthun
China: Inform public on GM, don't cheerlead
Yongbo Liu, Junsheng Li, C. Neal Stewart Jr
  Green research labs: Zero net emissions from Venter facility
J. Craig Venter, Robert M. Friedman
Teaching: Bury botany's outdated image
Isabel Marques
 
 
 
Specials
 
TECHNOLOGY FEATURE  
 
 
 
Cancer: A most exceptional response
Sometimes a drug causes a tumour to completely recede, but only in a tiny percentage of people. Scientists want to decipher such outlier responses for the benefit of all patients.
Vivien Marx
 
 
Research
 
NEW ONLINE  
 
 
 
Sensory systems: The yin and yang of cortical oxytocin
Female mice can learn to respond to distress calls from young mice — an ability that has now been found to be improved through signalling by the hormone oxytocin in the left auditory cortex of the brain.
Microbiology: Malaria runs rings round artemisinin
In parts of southeast Asia, malaria parasites are showing resistance to the active ingredient in artemisinin-based antimalarial drugs. Delineation of a cell-signalling pathway might help to explain this phenomenon.
CRISPR adaptation biases explain preference for acquisition of foreign DNA
In the bacterial immunity system CRISPR, spacer acquisition is facilitated near replication-termination regions.
Oxytocin enables maternal behaviour by balancing cortical inhibition
A study of pup retrieval behaviour in mice shows that oxytocin modulates cortical responses to pup calls specifically in the left auditory cortex; in virgin females, call-evoked responses were enhanced, thus increasing their salience, by pairing oxytocin delivery in the left auditory cortex with the calls, suggesting enhancement was a result of balancing the magnitude and timing of inhibition with excitation.
The Drosophila TNF receptor Grindelwald couples loss of cell polarity and neoplastic growth
Cell polarity is an important feature of many tissues and is often disrupted in cancer; the TNF receptor Grindelwald is now shown to have an important role in coordinating cell polarity and neoplastic growth in a Drosophila model.
A molecular mechanism of artemisinin resistance in Plasmodium falciparum malaria
Artemisinins are key anti-malarial drugs, but artemisinin resistance has been increasing; this study identifies the molecular target of artemisinins as phosphatidylinositol-3-kinase and increase of the lipid product phosphatidylinositol-3-phosphate induces resistance in Plasmodium falciparum.
Brief Communications Arising  
 
 
 
MAGI3–AKT3 fusion in breast cancer amended
Juan-Miguel Mosquera, Sonal Varma, Chantal Pauli et al.
Pugh et al. reply
Trevor J. Pugh, Shantanu Banerji, Matthew Meyerson
News and Views  
 
 
 
Cancer: The complex seeds of metastasis
Michael M. Shen
Planetary science: A new recipe for Earth formation
Richard W. Carlson
Cancer: An extravascular route for tumour cells
Mary J. C. Hendrix
 
Advertising.
Organic chemistry: Streamlining drug synthesis
Joel M. Hawkins
 
Particle physics: A weighty mass difference
Frank Wilczek
Ecology: Recovering the potential of coral reefs
Nicholas K. Dulvy, Holly K. Kindsvater
 
Articles  
 
 
 
A resource for cell line authentication, annotation and quality control
Competing financial interests. The majority of authors are employees of Genentech Inc. and/or hold stock in Roche.
Mamie Yu, Suresh K. Selvaraj, May M. Y. Liang-Chu, Sahar Aghajani, Matthew Busse et al.
Crystal structures of the human adiponectin receptors
The crystal structures of the human adiponectin receptors AdipoR1 and AdipoR2 are solved at 2.9 and 2.4 Å resolution, respectively; the structural and functional information may aid the development and optimization of adiponectin receptor agonists for the treatment of obesity-related diseases.
Hiroaki Tanabe, Yoshifumi Fujii, Miki Okada-Iwabu et al.
Two disparate ligand-binding sites in the human P2Y1 receptor
Two X-ray crystal structures are presented of the human P2Y1 G-protein-coupled receptor, which is an important target for anti-thrombotic drugs; the structures unexpectedly reveal two ligand-binding sites.
Dandan Zhang, Zhan-Guo Gao, Kaihua Zhang et al.
Letters  
 
 
 
An ultrafast rechargeable aluminium-ion battery
An aluminium-ion battery is reported that can charge within one minute, and offers improved cycle life compared to previous devices; it operates through the electrochemical deposition and dissolution of aluminium at the anode, and the intercalation/de-intercalation of chloroaluminate anions into a novel graphitic-foam cathode.
Meng-Chang Lin, Ming Gong, Bingan Lu et al.
A Mercury-like component of early Earth yields uranium in the core and high mantle 142Nd
High pressure experiments show that addition of a reduced sulfur-rich body to Earth during its accretion would provide enough energy to power the core’s geodynamo and, by fractionating neodymium relative to samarium, would explain the observed enrichment of Earth’s mantle in neodymium-142.
Anke Wohlers, Bernard J. Wood
Therapy-induced tumour secretomes promote resistance and tumour progression
Tumour cells respond to an effective, targeted drug treatment with BRAF, ALK or EGFR kinase inhibitors by inducing a complex network of secreted signals that promote tumour growth, dissemination and metastasis of drug-resistant cancer cell clones, and increase the survival of drug-sensitive tumour cells, potentially contributing to incomplete tumour regression.
Anna C. Obenauf, Yilong Zou, Andrew L. Ji et al.
A model of breast cancer heterogeneity reveals vascular mimicry as a driver of metastasis
Different clones of a mammary tumour cell line possess differential abilities to contribute to the formation of metastasis; the expression of Serpine2 and Slp1 proteins drives vascular mimicry and metastasis to the lung, with similar associations observed in human data sets, and these proteins also function as anticoagulants, thus further promoting extravasation of tumour cells.
Elvin Wagenblast, Mar Soto, Sara Gutiérrez-Ángel et al.
Thirst driving and suppressing signals encoded by distinct neural populations in the brain
Two genetically distinct populations of neurons in the subfornical organ of mice can either induce thirst and water-seeking behaviour or suppress thirst, regardless of the hydration status of the animal.
Yuki Oka, Mingyu Ye, Charles S. Zuker
Recovery potential of the world's coral reef fishes
A study of the recovery potential of over 800 of the world's coral reefs shows that 83% of fished reefs are missing more than half their expected biomass, with severe consequences for key ecosystem functions; protection from fishing would allow full recovery in 35 years on average, but in 59 years for the most degraded reefs.
M. Aaron MacNeil, Nicholas A. J. Graham, Joshua E. Cinner et al.
The evolutionary history of lethal metastatic prostate cancer
The subclonal composition of human prostate tumours and their metastases has been mapped by whole-genome sequencing, thus establishing the evolutionary trees behind the development and spread of these cancers; an important observation was that metastases could be re-seeded multiple times, and spread from one tumour to another was frequently seen.
Gunes Gundem, Peter Van Loo, Barbara Kremeyer et al.
SHMT2 drives glioma cell survival in ischaemia but imposes a dependence on glycine clearance
Tumours are a low-oxygen environment, in this study glioblastoma cells are found to overexpress the serine hydroxymethyltransferase SHMT2; SHMT acts to reduce oxygen consumption, which confers the tumour cells with a survival advantage.
Dohoon Kim, Brian P. Fiske, Kivanc Birsoy et al.
Nuclear ashes and outflow in the eruptive star Nova Vul 1670
Observations of CK Vulpeculae reveal that it is surrounded by molecular gas and dust whose large mass and chemical composition cannot have come from a nova; the best explanation is that this object is the remnant of the merger of two stars.
Tomasz Kamiński, Karl M. Menten, Romuald Tylenda et al.
Radiation and dual checkpoint blockade activate non-redundant immune mechanisms in cancer
In this study, involving melanoma patients and a mouse model for melanoma, an optimal anti-tumour response was induced by using a combination of radiation with anti-CTLA4 and anti-PD-L1 antibody therapies, each attacking the tumour from a different angle.
Christina Twyman-Saint Victor, Andrew J. Rech, Amit Maity et al.
Multistep continuous-flow synthesis of (R)- and (S)-rolipram using heterogeneous catalysts
The continuous-flow synthesis of both enantiomers of a complex molecule, the anti-inflammatory drug rolipram, is described, using only columns packed with achiral and chiral heterogeneous catalysts, thus enabling batch processing to be avoided.
Tetsu Tsubogo, Hidekazu Oyamada, Shū Kobayashi
Icebergs not the trigger for North Atlantic cold events
A delay between surface cooling and the arrival of ice-rafted debris at a site southwest of Iceland over the past four glacial cycles implies that icebergs typically arrived too late to have triggered cooling, although the freshwater derived from melting icebergs may provide a positive feedback for cold stadial conditions.
Stephen Barker, James Chen, Xun Gong et al.
Emotional learning selectively and retroactively strengthens memories for related events
Initially weak episodic memories in humans can be selectively enhanced and consolidated following later emotional learning involving conceptually related information, suggesting a mechanism for how we can remember initially inconsequential information after a relevant later experience.
Joseph E. Dunsmoor, Vishnu P. Murty, Lila Davachi et al.
Theileria parasites secrete a prolyl isomerase to maintain host leukocyte transformation
Parasites of the Theileria genus infect cattle and transform their host cells, a transformation that can be reversed by treatment with the drug buparvaquone; here, a Theileria homologue of the peptidyl-prolyl isomerase PIN1 is shown to be secreted into the host cell, where it promotes transformation and can be directly inhibited by buparvaquone.
J. Marsolier, M. Perichon, J. D. DeBarry et al.
β-Lactam formation by a non-ribosomal peptide synthetase during antibiotic biosynthesis
The monocyclic β-lactam rings of the nocardicin family of antibiotics are biosynthesized by an unprecedented activity of non-ribosomal peptide synthetases, a mechanism that is distinct from the pathways to the other classes of β-lactam antibiotics.
Nicole M. Gaudelli, Darcie H. Long, Craig A. Townsend
Corrigenda  
 
 
 
Corrigendum: Endocrinization of FGF1 produces a neomorphic and potent insulin sensitizer
Jae Myoung Suh, Johan W. Jonker, Maryam Ahmadian et al.
Corrigendum: Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism
Fiona Cuskin, Elisabeth C. Lowe, Max J. Temple et al.
Errata  
 
 
 
Erratum: A new antibiotic kills pathogens without detectable resistance
Losee L. Ling, Tanja Schneider, Aaron J. Peoples et al.
 
 
Careers & Jobs
 
Feature  
 
 
 
Glaciology: Climatology on thin ice
Neil Savage
Q&AS  
 
 
 
Turning point: Arun Shukla
Virginia Gewin
Futures  
 
 
The buyout
Share and share alike.
Ananyo Bhattacharya
 
 
 
 
 

naturejobs.com

naturejobs.com Science jobs of the week

 
 
 

Postdoctoral Scientist

 
 

Texas Biomedical Research Institute 

 
 
 
 
 

Clinical Research Fellow

 
 

University of Oxford 

 
 
 
 
 

Senior Scientist - Tenure Track

 
 

Paul Scherrer Institut (PSI) 

 
 
 
 
 

Research Associate

 
 

University of Cambridge 

 
 
 
 

No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. Keep up-to-date with the latest sector trends, vote in our reader poll and sign-up to receive the monthly Naturejobs newsletter.

 
 
 
 
 
 
 

natureevents.com - The premier science events website

natureevents directory featured events

 
 
 
 

Alzheimer's Association International Conference 2015

 
 

18.07.15 Washington, USA

 
 
 
 

Natureevents Directory is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. Featured across Nature Publishing Group journals and centrally at natureevents.com it is an essential reference guide to scientific events worldwide.

 
 
 
 
 
Your email address is in the Nature mailing list.

You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/nams/svc/myaccount (You will need to log in to be recognised as a nature.com registrant).
 
 
For further technical assistance, please contact our registration department at registration@nature.com

For print subscription enquiries, please contact our subscription department at subscriptions@nature.com

For other enquiries, please contact feedback@nature.com

Nature Publishing Group | 75 Varick Street, 9th Floor | New York | NY 10013-1917 | USA

Nature Publishing Group's offices:

Principal offices: London - New York - Tokyo

Worldwide offices: Basingstoke - Boston - Buenos Aires - Delhi - Hong Kong - Madrid - Melbourne - Munich - Paris - San Francisco - Seoul - Washington DC

Macmillan Publishers Limited is a company incorporated in England and Wales under company number 785998 and whose registered office is located at Brunel Road, Houndmills, Basingstoke, Hampshire RG21 6XS.

© 2015 Macmillan Publishers Limited. All Rights Reserved.
 

No comments: