| | Volume 513 Number 7518 | | | nature | | The science that matters. Every week. | | | | | | | |  | | APPLY BY SEPT 26th for the 2014 ONCOLOGY RESEARCH GRANT Together with Illumina, we're giving two deserving researchers the power to tap into the wealth of genomic data locked within FFPE samples using an innovative technique developed by EA | Quintiles using Illumina's RNA Access method. Unleash the power of your research with RNA-seq and DNA Methylation. | | | | | | | Jump to the content that matters to you | | | | | | | | Specials - Insight: Exoplanets | | | | It was less than twenty years ago that the first discovery of an extrasolar planet orbiting a star similar to the Sun was reported, and as ‘new’ exoplanets were revealed in ones and twos each discovery was a major event. Time and science move on and now this collection of five specially commissioned reviews provides a snapshot of the maturing field of exoplanet research. The final review casts an eye forward at the developments we can expect in the next few years. ▼ more | | | | | | | | | Lethal aggression in Pan is better explained by adaptive strategies than human impacts | Suggestions that violence in our closest living primate relatives is mainly a response to human activities are refuted in this meta-analysis of studies of chimpanzees and bonobos across Africa. Rather, aggression between chimpanzees is the normal and expected product of adaptive strategies to obtain resources or mates, and has no connection with the presence or otherwise of human beings. Chimps were born to get wild. | | | | | | | | | Aridification of the Sahara desert caused by Tethys Sea shrinkage during the Late Miocene | Most evidence suggests that the modern Sahara desert first arose between two and three million years ago, coinciding with the initiation of major glaciations in the Northern Hemisphere. This study puts Saharan origins much earlier. Zhongshi Zhang et al. show that the drying of the Tethys Sea — the progenitor of the modern Mediterranean, Black and Caspian Seas — weakened the northern extension of the African monsoon and led to the creation of the Sahara desert about seven million years ago. | | | | | | | | | | | | | | | | | Spreading continents kick-started plate tectonics | Plate tectonics — the large scale motion of Earth’s crust and upper mantle (the lithosphere) — may have been kick-started by the gravitational spreading of Earth’s continents during the Archaean eon, around 2.5 to 4 billion years ago. The findings, reported in a numerical modelling study in Nature this week, add new insights into the tectonic processes on early Earth. | | | | | | | | | In this week's podcast: Artificial sweeteners might cause glucose intolerance, striving for diversity in science, and a taster of new podcast, Backchat. | | | | | | | | | | | | | | | | | | | | | | | | Diversity challenge ▶ | | | There is growing evidence that embracing diversity — in all its senses — is key to doing good science. But there is still work to be done to ensure that inclusivity is the default, not the exception. | | | | | | | | A worthy ambition ▶ | | | Finalizing the European Research Area is still a vibrant and relevant goal. | | | | | | | | Amped-up plants ▶ | | | Bacterial enzyme supercharges photosynthesis, promising increased yields for crops. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Diversity: Pride in science ▶ | | | The sciences can be a sanctuary for gay, lesbian, bisexual and transgender individuals, but biases may still discourage many from coming out. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Linguistics: The write stuff ▶ | | | Steven Pinker's provocative treatise on language use and abuse would benefit from more data, finds Paul Raeburn. | | | | | | | | Evolution: Tribes like us ▶ | | | Tim Lenton is intrigued by E. O. Wilson's sweeping perspective on humanity's past — and possible futures. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |  | | Dual Use Research on Microbes: Symposium on Biosafety, Biosecurity, and Responsibility The Volkswagen Foundation’s symposium in collaboration with the Max Planck Society (December 10-12, 2014, Germany) will discuss dual use research of concern with microbes: How can we balance scientific freedom, communication of research results, and society’s interest to not be exposed to potentially uncontrollable risks? The rapid development of research requires a broad agreement on possible limits to theoretically harmful experiments. Be part of the discussion between scientists, governmental and research institutions, and public stakeholders and register online. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Statin treatment rescues FGFR3 skeletal dysplasia phenotypes ▶ | | | Akihiro Yamashita, Miho Morioka, Hiromi Kishi et al. | | | This study reprograms fibroblasts from thanatophoric dysplasia type I (TD1) and achondroplasia (ACH) patients into induced pluripotent stem cells (iPSCs), finding that chondrogenic differentiation results in the formation of degraded cartilage; statin treatment led to significant recovery of bone growth in a mouse model of ACH. | | | | | | | | Artificial sweeteners induce glucose intolerance by altering the gut microbiota ▶ | | | Jotham Suez, Tal Korem, David Zeevi et al. | | | Non-caloric artificial sweeteners (NAS), widely used food additives considered to be safe and beneficial alternatives to sugars, are shown here to lead to the development of glucose intolerance through compositional and functional changes in the gut microbiota of mice, and the deleterious metabolic effects are transferred to germ-free mice by faecal transplant; NAS-induced dysbiosis and glucose intolerance are also demonstrated in healthy human subjects. | | | | | | | | Histone H2A.Z subunit exchange controls consolidation of recent and remote memory ▶ | | | Iva B. Zovkic, Brynna S. Paulukaitis, Jeremy J. Day et al. | | | The authors identify a specific histone variant as a memory-suppressor that is initially reduced in expression within the hippocampus during memory formation; as a memory is consolidated to the cortex, reduced histone association with specific plasticity genes is observed, promoting stabilization of the memory. | | | | | | | | Discovery and characterization of small molecules that target the GTPase Ral ▶ | | | Chao Yan, Degang Liu, Liwei Li et al. | | | Using a structure-based approach, small molecule inhibitors that selectively target the GTPase Ral are identified and characterized; these first-generation inhibitors will be valuable tools for elucidating the Ral signalling pathway and constitute a step towards developing Ral-specific agents for cancer therapy. | | | | | | | | Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state ▶ | | | Pedro Crevillén, Hongchun Yang, Xia Cui et al. | | | The Arabidopsis thaliana floral repressor FLC is epigenetically silenced by prolonged cold in a process called vernalization and then is reactivated before the completion of seed development; a histone demethylase, ELF6, is now shown to be involved in reactivating FLC in reproductive tissues, allowing the resetting of FLC expression and thus the requirement for vernalization in each generation. | | | | | | | | | | | Members of the human gut microbiota involved in recovery from Vibrio cholerae infection ▶ | | | Ansel Hsiao, A. M. Shamsir Ahmed, Sathish Subramanian et al. | | | Recovery from cholera is characterized by a pattern of accumulation of bacterial taxa that shows similarities to the pattern of maturation of the gut microbiota in healthy children, raising the possibility that some of these taxa may be useful for ‘repair’ of the gut microbiota in individuals whose gut communities have been ‘wounded’ through a variety of insults. | | | | | | | | | | | Sae2 promotes dsDNA endonuclease activity within Mre11–Rad50–Xrs2 to resect DNA breaks ▶ | | | Elda Cannavo, Petr Cejka | | | The MRX complex, required for double-strand break (DSB) repair by homologous recombination, has 3′ to 5′ exonuclease activity, but homologous recombination at a DSB uses a 3′-tailed molecule, which requires resection of the 5′ strand; here it is shown that in yeast, Sae2 nuclease promotes MRX to make an initial endonucleolytic cut on the 5′ strand that may allow MRX to digest the 5′ strand back to the end in a 3′ to 5′ fashion. | | | | | | | | A faster Rubisco with potential to increase photosynthesis in crops ▶ | | | Myat T. Lin, Alessandro Occhialini, P. John Andralojc et al. | | | The plant enzyme Rubisco is the main enzyme converting atmospheric carbon dioxide into biological compounds, however, this enzymatic process is inefficient in vascular plants; this study demonstrates that tobacco plants can be engineered to fix carbon with a faster cyanobacterial Rubisco, thus potentially improving plant photosynthesis. | | | | | | | | | | | The genomic substrate for adaptive radiation in African cichlid fish OPEN ▶ | | | David Brawand, Catherine E. Wagner, Yang I. Li et al. | | | Genomes and transcriptomes of five distinct lineages of African cichlids, a textbook example of adaptive radiation, have been sequenced and analysed to reveal that many types of molecular changes contributed to rapid evolution, and that standing variation accumulated during periods of relaxed selection may have primed subsequent diversification. | | | | | | | | Proteogenomic characterization of human colon and rectal cancer ▶ | | | Bing Zhang, Jing Wang, Xiaojing Wang et al. | | | Proteome analysis of The Cancer Genome Atlas (TCGA) colorectal cancer specimens reveals that DNA- or RNA-level measurements cannot reliably predict protein abundance, colorectal tumours can be separated into distinct proteotypes, and that copy number alterations drive mRNA abundance changes but few extend to protein-level changes. | | | | | | | | Molecular architecture and mechanism of the anaphase-promoting complex ▶ | | | Leifu Chang, Ziguo Zhang, Jing Yang et al. | | | The anaphase-promoting complex/cyclosome (APC/C) is a large E3 ligase that mediates ubiquitin-dependent proteolysis of cell cycle regulatory proteins; here the complete secondary structure architecture of human APC/C complexed with its coactivator CDH1 and substrate HSL1 is determined at 7.4 Å resolution, revealing allosteric changes induced by the coactivator that enhance affinity for UBCH10–ubiqutin. | | | | | | | | | | | | | | Optimization of lag time underlies antibiotic tolerance in evolved bacterial populations ▶ | | | Ofer Fridman, Amir Goldberg, Irine Ronin et al. | | | Repeated exposure of the bacterium Escherichia coli to clinically relevant concentrations of ampicillin results in the evolution of tolerance—the ability to survive until the antibiotic concentration diminishes—through an extension of the lag phase, a finding that has implications for slowing the evolution of antibiotic resistance. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Brief Communications Arising | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | nature.com webcasts Macmillan Science Communication presents a custom webcast on: Understanding bacterial diversity through metagenomics 16S sequencing Wednesday September 24th, 2014 Sponsored by: 
| | | | | | | | | | | | | | | | | | | | | | | | | Statin treatment rescues FGFR3 skeletal dysplasia phenotypes ▶ | | | Akihiro Yamashita, Miho Morioka, Hiromi Kishi et al. | | | This study reprograms fibroblasts from thanatophoric dysplasia type I (TD1) and achondroplasia (ACH) patients into induced pluripotent stem cells (iPSCs), finding that chondrogenic differentiation results in the formation of degraded cartilage; statin treatment led to significant recovery of bone growth in a mouse model of ACH. | | | | | | | | Artificial sweeteners induce glucose intolerance by altering the gut microbiota ▶ | | | Jotham Suez, Tal Korem, David Zeevi et al. | | | Non-caloric artificial sweeteners (NAS), widely used food additives considered to be safe and beneficial alternatives to sugars, are shown here to lead to the development of glucose intolerance through compositional and functional changes in the gut microbiota of mice, and the deleterious metabolic effects are transferred to germ-free mice by faecal transplant; NAS-induced dysbiosis and glucose intolerance are also demonstrated in healthy human subjects. | | | | | | | | Discovery and characterization of small molecules that target the GTPase Ral ▶ | | | Chao Yan, Degang Liu, Liwei Li et al. | | | Using a structure-based approach, small molecule inhibitors that selectively target the GTPase Ral are identified and characterized; these first-generation inhibitors will be valuable tools for elucidating the Ral signalling pathway and constitute a step towards developing Ral-specific agents for cancer therapy. | | | | | | | | | | | Proteogenomic characterization of human colon and rectal cancer ▶ | | | Bing Zhang, Jing Wang, Xiaojing Wang et al. | | | Proteome analysis of The Cancer Genome Atlas (TCGA) colorectal cancer specimens reveals that DNA- or RNA-level measurements cannot reliably predict protein abundance, colorectal tumours can be separated into distinct proteotypes, and that copy number alterations drive mRNA abundance changes but few extend to protein-level changes. | | | | | | | | | | | | | | | | | | | | Brief Communications Arising | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Large, non-saturating magnetoresistance in WTe2 ▶ | | | Mazhar N. Ali, Jun Xiong, Steven Flynn et al. | | | The magnetoresistance effect in WTe2, a layered semimetal, is extremely large: the electrical resistance can be changed by more than 13 million per cent at very high magnetic fields and low temperatures. | | | | | | | | | | | | | | Multifunctional organoboron compounds for scalable natural product synthesis ▶ | | | Fanke Meng, Kevin P. McGrath, Amir H. Hoveyda | | | A catalytic process is reported that begins with a highly selective copper–boron addition to a monosubstituted allene, and in which the resulting boron-substituted organocopper intermediate then participates in a chemoselective, site-selective and enantioselective allylic substitution; this approach is used in the enantioselective synthesis of gram quantities of two natural products. | | | | | | | | | | | A supermassive black hole in an ultra-compact dwarf galaxy ▶ | | | Anil C. Seth, Remco van den Bosch, Steffen Mieske et al. | | | Dynamical modelling of the ultra-compact dwarf galaxy M60-UCD1 reveals the presence of a supermassive black hole; this suggests the object is a stripped galaxy nucleus and implies the existence of supermassive black holes in many other ultra-compact dwarf galaxies. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Asian monsoons in a late Eocene greenhouse world ▶ | | | A. Licht, M. van Cappelle, H. A. Abels et al. | | | Asian monsoons were strongly active 40 million years ago and were enhanced by high atmospheric CO2 content. They were significantly weakened when CO2 levels decreased 34 million years ago and then reinitiated several million years later. | | | | | | | | | | | Prevalence of viscoelastic relaxation after the 2011 Tohoku-oki earthquake ▶ | | | Tianhaozhe Sun, Kelin Wang, Takeshi Iinuma et al. | | | Seafloor Global Positioning System observations immediately after the great 2011 Tohoku-oki earthquake provide unambiguous evidence for the dominant role of viscoelastic relaxation in short-term postseismic deformation, rather than just afterslip on the fault as is commonly assumed. | | | | | | | | | | | | | | Spreading continents kick-started plate tectonics ▶ | | | Patrice F. Rey, Nicolas Coltice, Nicolas Flament | | | The slow gravitational collapse of early continents could have kick-started transient episodes of plate tectonics until, as the Earth’s interior cooled and oceanic lithosphere became heavier, plate tectonics became self-sustaining. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | When disease strikes from nowhere ▶ | | | When healthy parents have a child with a genetic disorder, the cause is sometimes a new mutation. Tools are emerging to meet the challenge of finding such changes. | | | | | | | | | | Nature has once again been ranked the N0.1 weekly science journal with an Impact Factor of 42.351*. To celebrate we are offering you the opportunity to subscribe at an exclusive limited time offer of only $42, £42 or €42. This is a limited time offer - so don't miss out and subscribe today! *2013 Journal Citation Reports® (Thomson Reuters, 2014) | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Careers related news & comment | | | | | | | | | | | | | | | |  naturejobs.com Science jobs of the week | | | | | | | | | | | | | | | No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. Keep up-to-date with the latest sector trends, vote in our reader poll and sign-up to receive the monthly Naturejobs newsletter. | | | | | | | • Natureevents Directory featured events | | | | | |  natureevents directory featured events | | | | | | | Natureevents Directory is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. 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