| |  | | | Weekly Content Alert
|  | | 03 September 2014 |  | | Featured image: |  |  |  | | Twomey et al. show that mimicry may drive speciation in frogs. | | | | | |  | | | Latest Articles | View all Articles | | | | 
| Weakening of the stratospheric polar vortex by Arctic sea-ice loss |  | | Baek-Min Kim, Seok-Woo Son, Seung-Ki Min, Jee-Hoon Jeong, Seong-Joong Kim, Xiangdong Zhang, Taehyoun Shim and Jin-Ho Yoon |  | | The mechanism behind the severely cold winters experienced by the mid-latitudes of the Northern Hemisphere in recent years is not fully understood. Here, the authors combine observational analyses and model experiments to reveal a dynamic connection between Arctic sea-ice cover and the polar stratosphere. |  | | 02 September 2014 | doi: 10.1038/ncomms5646 |  | | Earth Sciences Atmospheric science Climate science | 





| Loss of PIKfyve in platelets causes a lysosomal disease leading to inflammation and thrombosis in mice |  | | Sang H. Min, Aae Suzuki, Timothy J. Stalker, Liang Zhao, Yuhuan Wang, Chris McKennan, Matthew J. Riese, Jessica F. Guzman, Suhong Zhang, Lurong Lian, Rohan Joshi, Ronghua Meng, Steven H. Seeholzer, John K. Choi, Gary Koretzky, Michael S. Marks and Charles S. Abrams |  | | PIKfyve is a lipid kinase essential for regulation of membrane homeostasis and vesicle trafficking along the endosomal-lysosomal pathway. Here the authors show that mice lacking PIKfyve exclusively in their platelets exhibit a systemic disorder characterized by multi-organ inflammation and thrombosis due to aberrant platelet lysosome function. |  | | 02 September 2014 | doi: 10.1038/ncomms5691 |  | | Biological Sciences Medical research | 



| TRPV channel-mediated calcium transients in nociceptor neurons are dispensable for avoidance behaviour OPEN |  | | Amanda S. Lindy, Puja K. Parekh, Richard Zhu, Patrick Kanju, Sree V. Chintapalli, Volodymyr Tsvilovskyy, Randen L. Patterson, Andriy Anishkin, Damian B. van Rossum and Wolfgang B. Liedtke |  | | TRPs are calcium-permeable channels involved in the sensing of damaging stimuli but the relationship between calcium influx and pain behaviour has been elusive. Here the authors find that the TRP channel OSM-9 functions as an ion channel in vivo in C. elegans, and establish residues that are critical for worm pain-like behaviour. |  | | 02 September 2014 | doi: 10.1038/ncomms5734 |  | | Biological Sciences Neuroscience | 


| Selective metal deposition at graphene line defects by atomic layer deposition |  | | Kwanpyo Kim, Han-Bo-Ram Lee, Richard W. Johnson, Jukka T. Tanskanen, Nan Liu, Myung-Gil Kim, Changhyun Pang, Chiyui Ahn, Stacey F. Bent and Zhenan Bao |  | | Defects in graphene strongly influence the material's physical properties, leading to the suggestion that defects might be tuned to improve performance. Here, via atomic layer deposition, the authors selectively deposit Pt at grapheme line defects and yield a superior platform for sensing applications. |  | | 02 September 2014 | doi: 10.1038/ncomms5781 |  | | Physical Sciences Materials science Nanotechnology | 

| A general and scalable synthesis approach to porous graphene |  | | Ding Zhou, Yi Cui, Pei-Wen Xiao, Mei-Yang Jiang and Bao-Hang Han |  | | Scalable routes towards porous graphene are useful for developing materials for mass transfer applications. Here, the authors report the fabrication of porous graphene with controllable pore size and nitrogen content via the carbothermal reaction of graphene and (poly)oxometallates. |  | | 02 September 2014 | doi: 10.1038/ncomms5716 |  | | Chemical Sciences Materials science | 

| A robust SNP barcode for typing Mycobacterium tuberculosis complex strains OPEN |  | | Francesc Coll, Ruth McNerney, José Afonso Guerra-Assunção, Judith R. Glynn, João Perdigão, Miguel Viveiros, Isabel Portugal, Arnab Pain, Nigel Martin and Taane G. Clark |  | | Genetic variation in Mycobacterium tuberculosis complex (MTBC) bacteria is responsible for differences in factors such as virulence and transmissibility. Here, the authors analyse the genomes of 1,601 MTBC isolates from diverse geographic locations and identify 62 SNPs that may be used to resolve lineages and sublineages of these strains. |  | | 01 September 2014 | doi: 10.1038/ncomms5812 |  | | Biological Sciences Genetics Microbiology | 

| Magnetic properties of uncultivated magnetotactic bacteria and their contribution to a stratified estuary iron cycle |  | | A.P. Chen, V.M. Berounsky, M.K. Chan, M.G. Blackford, C. Cady, B.M. Moskowitz, P. Kraal, E.A. Lima, R.E. Kopp, G.R. Lumpkin, B.P. Weiss, P. Hesse and N.G.F. Vella |  | | Magnetotactic bacteria synthesize magnetite or greigite magnetosomes that, when fossilized, can serve as biomarkers of past ocean redox shifts. Here, Chen et al. show that these magnetosome types have very similar coercivity distributions, with implications for the analysis of sedimentary magnetic records. |  | | 01 September 2014 | doi: 10.1038/ncomms5797 |  | | Earth Sciences Biogeochemistry Geology and geophysics Microbiology | 
| Contribution of RNA polymerase concentration variation to protein expression noise |  | | Sora Yang, Seunghyeon Kim, Yu Rim Lim, Cheolhee Kim, Hyeong Jeon An, Ji-Hyun Kim, Jaeyoung Sung and Nam Ki Lee |  | | The quantitative relationship between the fluctuation of specific extrinsic and intrinsic factors, and stochastic fluctuations in gene expression - or noise - has not been clearly established. Here, Yang et al. demonstrate that intrinsic noise is independent of - while extrinsic noise scales linearly with - variation in RNA polymerase abundance. |  | | 01 September 2014 | doi: 10.1038/ncomms5761 |  | | Biological Sciences Systems biology | 
| Giant spin Hall effect in graphene grown by chemical vapour deposition |  | | Jayakumar Balakrishnan, Gavin Kok Wai Koon, Ahmet Avsar, Yuda Ho, Jong Hak Lee, Manu Jaiswal, Seung-Jae Baeck, Jong-Hyun Ahn, Aires Ferreira, Miguel A. Cazalilla, Antonio H. Castro Neto and Barbaros Özyilmaz |  | | Manipulating spin currents in graphene by the spin–orbit interaction is important for many technological developments. Here, the authors show that the presence of residual metallic adatoms in chemical vapour deposition graphene enhances its spin–orbit coupling by three orders of magnitude. |  | | 01 September 2014 | doi: 10.1038/ncomms5748 |  | | Physical Sciences Condensed matter Materials science | 
| TSC1 controls macrophage polarization to prevent inflammatory disease |  | | Linnan Zhu, Tao Yang, Longjie Li, Lina Sun, Yuzhu Hou, Xuelian Hu, Lianjun Zhang, Hongling Tian, Qingjie Zhao, Jianxia Peng, Hongbing Zhang, Ruoyu Wang, Zhongzhou Yang, Lianfeng Zhang and Yong Zhao |  | | Macrophages can be polarized to inflammatory M1 and anti-inflammatory M2 phenotypes, depending on the cytokine milieu. Here, Zhu et al. demonstrate that tuberous sclerosis complex 1 (TSC1) inhibits M1 and promotes M2 polarization of macrophages to prevent inflammatory disorders. |  | | 01 September 2014 | doi: 10.1038/ncomms5696 |  | | Biological Sciences Immunology Medical research | 


| A Cenozoic-style scenario for the end-Ordovician glaciation OPEN |  | | Jean-François Ghienne, André Desrochers, Thijs R.A. Vandenbroucke, Aicha Achab, Esther Asselin, Marie-Pierre Dabard, Claude Farley, Alfredo Loi, Florentin Paris, Steven Wickson and Jan Veizer |  | | Claims that the end-Ordovician Earth was characterized by giant ice sheets, yet paradoxically warm oceans and elevated CO2 levels are open to debate. Here, Ghienne et al. examine sedimentary records from low and high palaeolatitude settings and propose a revision of the mechanisms for end-Ordovician events. |  | | 01 September 2014 | doi: 10.1038/ncomms5485 |  | | Earth Sciences Climate science Geology and geophysics | 

| Structure and mechanism of action of the hydroxy–aryl–aldehyde class of IRE1 endoribonuclease inhibitors |  | | Mario Sanches, Nicole M. Duffy, Manisha Talukdar, Nero Thevakumaran, David Chiovitti, Marella D. Canny, Kenneth Lee, Igor Kurinov, David Uehling, Rima Al-awar, Gennadiy Poda, Michael Prakesch, Brian Wilson, Victor Tam, Colleen Schweitzer, Andras Toro, Julie L. Lucas, Danka Vuga, Lynn Lehmann, Daniel Durocher et al. |  | | Modulation of the unfolded protein response by targeting IRE1 has several potential therapeutic applications. Here, the authors provide a first structural view of inhibitors engaging the RNase-active site of IRE1 that suggests avenues towards the generation of analogues with increased potency and selectivity. |  | | 28 August 2014 | doi: 10.1038/ncomms5202 |  | | Biological Sciences Biochemistry Chemical biology | 
| Visualizing domain wall and reverse domain superconductivity |  | | M. Iavarone, S. A. Moore, J. Fedor, S. T. Ciocys, G. Karapetrov, J. Pearson, V. Novosad and S. D. Bader |  | | When superconductivity emerges in a thin superconductor grown on a ferromagnet, it does so in an array of interacting superconducting and normally conducting channels. Maria Iavarone and colleagues use scanning tunnelling microscopy to image how these channels form and interact. |  | | 28 August 2014 | doi: 10.1038/ncomms5766 |  | | Physical Sciences Condensed matter | 


| Mycobacterium tuberculosis acquires iron by cell-surface sequestration and internalization of human holo-transferrin |  | | Vishant Mahendra Boradia, Himanshu Malhotra, Janak Shrikant Thakkar, Vikas Ajit Tillu, Bhavana Vuppala, Pravinkumar Patil, Navdeep Sheokand, Prerna Sharma, Anoop Singh Chauhan, Manoj Raje and Chaaya Iyengar Raje |  | | Mycobacterium tuberculosis acquires iron from its host by producing iron-binding siderophores and by recruiting host transferrin to the phagosome. Here, Boradia et al. show that the bacterial GAPDH protein binds transferrin and drives the uptake of this host protein into M. tuberculosis cells. |  | | 28 August 2014 | doi: 10.1038/ncomms5730 |  | | Biological Sciences Cell biology Microbiology | 

| Solution-state conformation and stoichiometry of yeast Sir3 heterochromatin fibres |  | | Sarah G. Swygert, Benjamin J. Manning, Subhadip Senapati, Parminder Kaur, Stuart Lindsay, Borries Demeler and Craig L. Peterson |  | | Heterochromatin is a ‘repressed’ chromatin state involved in the generation of centromeres, the protection of telomeres and the maintenance of genome integrity. Here Swygert et al. show that Sir3 - a key factor in the formation of heterochromatin - promotes a chromatin structure distinct from the canonical 30 nm fibre. |  | | 28 August 2014 | doi: 10.1038/ncomms5751 |  | | Biological Sciences Molecular biology | 

| Multiple intrinsically identical single-photon emitters in the solid state OPEN |  | | L.J. Rogers, K.D. Jahnke, T. Teraji, L. Marseglia, C. Müller, B. Naydenov, H. Schauffert, C. Kranz, J. Isoya, L.P. McGuinness and F. Jelezko |  | | In quantum optical technologies, identical emitters of indistinguishable single photons are difficult to realize due to the inherent dissimilarity of each emitting device. Here, Rogers et al. demonstrate a solid-state uniform single-photon source, which does not require external tuning of optical properties. |  | | 27 August 2014 | doi: 10.1038/ncomms5739 |  | | Physical Sciences Applied physics Optical physics | 


| Screening of DUB activity and specificity by MALDI-TOF mass spectrometry OPEN |  | | Maria Stella Ritorto, Richard Ewan, Ana B. Perez-Oliva, Axel Knebel, Sara J. Buhrlage, Melanie Wightman, Sharon M. Kelly, Nicola T. Wood, Satpal Virdee, Nathanael S. Gray, Nicholas A. Morrice, Dario R. Alessi and Matthias Trost |  | | Deubiquitylases (DUBs) remove ubiquitin chains from proteins. Here the authors develop a mass spectrometry-based DUB activity screen using unmodified diubiquitin isomers to characterize substrate specificity for 42 human DUBs, and assess the potency and selectivity of 11 DUB inhibitors. |  | | 27 August 2014 | doi: 10.1038/ncomms5763 |  | | Biological Sciences Biochemistry Bioinformatics | 
| Recurrent CDC25C mutations drive malignant transformation in FPD/AML |  | | Akihide Yoshimi, Takashi Toya, Masahito Kawazu, Toshihide Ueno, Ayato Tsukamoto, Hiromitsu Iizuka, Masahiro Nakagawa, Yasuhito Nannya, Shunya Arai, Hironori Harada, Kensuke Usuki, Yasuhide Hayashi, Etsuro Ito, Keita Kirito, Hideaki Nakajima, Motoshi Ichikawa, Hiroyuki Mano and Mineo Kurokawa |  | | Familial platelet disorder with predisposition to acute myelogenous leukaemia (FPD/AML) is characterized by abnormal platelet function and a high risk of haematological malignancies. Here, the authors report frequent CDC25C mutations in FPD/AML patients and suggest that this gene may influence malignant transformation in FPD/AML. |  | | 27 August 2014 | doi: 10.1038/ncomms5770 |  | | Biological Sciences Cancer Genetics | 
| Actin–microtubule coordination at growing microtubule ends OPEN |  | | Magdalena Preciado López, Florian Huber, Ilya Grigoriev, Michel O. Steinmetz, Anna Akhmanova, Gijsje H. Koenderink and Marileen Dogterom |  | | The structural cross-talk between components of the eukaryotic cytoskeleton remains poorly understood. Here the authors engineer an actin-binding microtubule tip-tracking protein that guides microtubule growth along actin bundles, and allows microtubule growing ends to pull and bundle actin filaments. |  | | 27 August 2014 | doi: 10.1038/ncomms5778 |  | | Biological Sciences Cell biology | 

| The evolutionary origin of human hyper-cooperation |  | | J. M. Burkart, O. Allon, F. Amici, C. Fichtel, C. Finkenwirth, A. Heschl, J. Huber, K. Isler, Z. K. Kosonen, E. Martins, E.J. Meulman, R. Richiger, K. Rueth, B. Spillmann, S. Wiesendanger and C. P. van Schaik |  | | The evolutionary foundation of human prosociality remains poorly understood. Here, the authors show that extensive allomaternal care is the best predictor of prosocial behaviour among 15 primate species, including humans, which suggests that prosocial motivations arise along with cooperative breeding. |  | | 27 August 2014 | doi: 10.1038/ncomms5747 |  | | Biological Sciences Evolution | 
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