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| | 23 April 2014 | | Featured image: | | | | Miyasaka et al. visualise specific neuronal subpopulations that connect the olfactory bulb with higher olfactory centers in the zebrafish brain. | | | | | | | Advertisement | | Join the most influential in European science at EuroScience Open Forum (ESOF) 2014 Copenhagen - June 21-26, 2014 and be the first to know - scientific news from all of the sciences.
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Nature Partner Journals is a new series of online open access journals published in collaboration with world-renowned international partners. Each partnership in the portfolio brings together strong editorial leadership with world-class publication systems to deliver high-quality, peer-reviewed original research. | | | | | | | Latest Articles | View all Articles | | | The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates OPEN | | Camille Berthelot, Frédéric Brunet, Domitille Chalopin, Amélie Juanchich, Maria Bernard, Benjamin Noël, Pascal Bento, Corinne Da Silva, Karine Labadie, Adriana Alberti, Jean-Marc Aury, Alexandra Louis, Patrice Dehais, Philippe Bardou, Jérôme Montfort, Christophe Klopp, Cédric Cabau, Christine Gaspin, Gary H. Thorgaard, Mekki Boussaha et al. | | Although whole-genome duplications (WGDs) are rare events, they have an important role in shaping vertebrate evolution. Here, the authors sequence the rainbow trout genome and show that rediploidization after WGD occurs in a slow and stepwise manner. | | 22 April 2014 | doi: 10.1038/ncomms4657 | | Biological Sciences Evolution Genetics | Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development | | Jimena Giudice, Zheng Xia, Eric T. Wang, Marissa A. Scavuzzo, Amanda J. Ward, Auinash Kalsotra, Wei Wang, Xander H. T. Wehrens, Christopher B. Burge, Wei Li and Thomas A. Cooper | | Alternative splicing is a process during gene expression that increases the diversity of proteins encoded by a single gene. Here, the authors perform RNA-sequencing on cardiac cells from mice and show that extensive changes in gene expression and alternative splicing occur during the first month after birth. | | 22 April 2014 | doi: 10.1038/ncomms4603 | | Biological Sciences Medical research Molecular biology | Marine ice regulates the future stability of a large Antarctic ice shelf OPEN | | Bernd Kulessa, Daniela Jansen, Adrian J. Luckman, Edward C. King and Peter R. Sammonds | | Signs of instability in the Antarctic Larsen C ice shelf have raised concerns that it might soon collapse like its northern neighbour Larsen B. Kulessa et al. combine an ice-shelf model with satellite and geophysical data to show that despite dynamic similarities, Larsen C is presently stabilized by marine ice. | | 22 April 2014 | doi: 10.1038/ncomms4707 | | Earth Sciences Geology and geophysics | Quantifying quality in DNA self-assembly OPEN | | Klaus F. Wagenbauer, Christian H. Wachauf and Hendrik Dietz | | Sequence-programmable self-assembly of DNA enables the formation of a variety of complex structures; however, determining the quality of these multi-chain structures is challenging. Here the authors address this problem by using a fluorescent probe to measure the amount of unpaired bases in the DNA assemblies. | | 22 April 2014 | doi: 10.1038/ncomms4691 | | Physical Sciences Bioengineering Biophysics
Nanotechnology | APC/C is an essential regulator of centrosome clustering | | Konstantinos Drosopoulos, Chan Tang, William C. H. Chao and Spiros Linardopoulos | | Cells with multiple centrosomes, as are often observed in cancer, can still divide successfully because the centrosomes cluster to form a single spindle pole body. Drosopoulos et al. show that degradation of the kinesin Eg5 by APC/C-CDH1 is required for centrosome clustering. | | 22 April 2014 | doi: 10.1038/ncomms4686 | | Biological Sciences Cell biology | Crystal structure of listeriolysin O reveals molecular details of oligomerization and pore formation | | Stefan Köster, Katharina van Pee, Martina Hudel, Martin Leustik, Daniel Rhinow, Werner Kühlbrandt, Trinad Chakraborty and Özkan Yildiz | | The cytolysin, listeriolysin O (LLO), is expressed by Listeria and forms pores in the phagosomal membrane in response to decreased pH. Here, Yildiz et al. solve the crystal structure of LLO, identify residues that serve as the pH sensor, and determine the mechanism of pore formation in host membranes. | | 22 April 2014 | doi: 10.1038/ncomms4690 | | Biological Sciences Biochemistry Biophysics
Microbiology | Enhancing adult nerve regeneration through the knockdown of retinoblastoma protein | | Kimberly J. Christie, Anand Krishnan, Jose A. Martinez, Kaylynn Purdy, Bhagat Singh, Shane Eaton and Douglas Zochodne | | Retinoblastoma protein (Rb) is a key inhibitor of cell cycle progression and its deletion is implicated in cancer. Here, the authors show that Rb is also involved in regulating nerve regeneration, since silencing Rb promotes neurite outgrowth and recovery of sensorimotor responses after nerve injury. | | 22 April 2014 | doi: 10.1038/ncomms4670 | | Biological Sciences Neuroscience | Silicon carbide-derived carbon nanocomposite as a substitute for mercury in the catalytic hydrochlorination of acetylene | | Xingyun Li, Xiulian Pan, Liang Yu, Pengju Ren, Xing Wu, Litao Sun, Feng Jiao and Xinhe Bao | | Acetylene hydrochlorination is an industrially important reaction but is, in many instances, still catalyzed by mercury chloride. Here, the authors report a nanocomposite of pyrrolic nitrogen-doped carbon capable of activating acetylene, which also exhibits promising performance in vinyl chloride formation. | | 22 April 2014 | doi: 10.1038/ncomms4688 | | Chemical Sciences Catalysis Materials science | Social heuristics shape intuitive cooperation | | David G. Rand, Alexander Peysakhovich, Gordon T. Kraft-Todd, George E. Newman, Owen Wurzbacher, Martin A. Nowak and Joshua D. Greene | | Whether or not intuition favours cooperative decision making has been controversial. Rand et al. carry out a meta-analysis of 15 studies involving volunteers playing economic games, and confirm a role for intuition in cooperation, which varies according to the volunteers' previous experience with similar games. | | 22 April 2014 | doi: 10.1038/ncomms4677 | | Biological Sciences Evolution Neuroscience | IKKα restoration via EZH2 suppression induces nasopharyngeal carcinoma differentiation | | Min Yan, Yan Zhang, Bin He, Jin Xiang, Zi-feng Wang, Fei-meng Zheng, Jie Xu, Ming-yuan Chen, Yu-liang Zhu, Hai-jun Wen, Xiang-bo Wan, Cai-feng Yue, Na Yang, Wei Zhang, Jia-liang Zhang, Jing Wang, Yang Wang, Lian-hong Li, Yi-xin Zeng, Eric W.-F. Lam et al. | | Nasopharyngeal carcinomas often present as undifferentiated tumours. Here, Yan et al. show that reduced expression of IKK via promoter methylation results in the undifferentiated phenotype of the tumours and that treatment with retinoic acid can reverse these features. | | 17 April 2014 | doi: 10.1038/ncomms4661 | | Biological Sciences Cancer | Supersymmetric mode converters | | Matthias Heinrich, Mohammad-Ali Miri, Simon Stützer, Ramy El-Ganainy, Stefan Nolte, Alexander Szameit and Demetrios N. Christodoulides | | In its optical manifestation, supersymmetry can potentially establish close relationships between seemingly different dielectric structures. Here, the authors use the perfect global phase matching afforded by supersymmetry for mode conversion and mode division multiplexing in highly multimoded systems. | | 16 April 2014 | doi: 10.1038/ncomms4698 | | Physical Sciences Optical physics | Adjustment of microbial nitrogen use efficiency to carbon:nitrogen imbalances regulates soil nitrogen cycling OPEN | | Maria Mooshammer, Wolfgang Wanek, Ieda Hämmerle, Lucia Fuchslueger, Florian Hofhansl, Anna Knoltsch, Jörg Schnecker, Mounir Takriti, Margarete Watzka, Birgit Wild, Katharina M. Keiblinger, Sophie Zechmeister-Boltenstern and Andreas Richter | | Nitrogen availability in soils is predominantly controlled by microorganisms, yet our understanding of their organic nitrogen use is limited. Mooshammer et al. show that microbial nitrogen use efficiency is dependent on resource stoichiometry and substrate type. | | 16 April 2014 | doi: 10.1038/ncomms4694 | | Earth Sciences Biogeochemistry | Length-dependent thermal conductivity in suspended single-layer graphene | | Xiangfan Xu, Luiz F. C. Pereira, Yu Wang, Jing Wu, Kaiwen Zhang, Xiangming Zhao, Sukang Bae, Cong Tinh Bui, Rongguo Xie, John T. L. Thong, Byung Hee Hong, Kian Ping Loh, Davide Donadio, Baowen Li and Barbaros Özyilmaz | | Graphene is known to display unique functional properties due to its two-dimensional structure. Here, the authors measure the thermal conductivity of suspended graphene as a function of sample length, finding that thermal conductivity is higher in longer samples as a result of two-dimensional phonons. | | 16 April 2014 | doi: 10.1038/ncomms4689 | | Physical Sciences Condensed matter Materials science | Unexpected interplay of bonding height and energy level alignment at heteromolecular hybrid interfaces | | Benjamin Stadtmüller, Daniel Lüftner, Martin Willenbockel, Eva M. Reinisch, Tomoki Sueyoshi, Georg Koller, Serguei Soubatch, Michael G. Ramsey, Peter Puschnig, F. Stefan Tautz and Christian Kumpf | | Typically for surface adsorption there is a direct relationship between interaction strength and geometric distance—a stronger interaction leads to a shorter distance between interacting objects. Here the authors show a case where a stronger interaction leads to a larger distance, and explain this apparent paradox. | | 16 April 2014 | doi: 10.1038/ncomms4685 | | Chemical Sciences Condensed matter Nanotechnology
Physical chemistry | Self-assembled ultrathin nanotubes on diamond (100) surface | | Shaohua Lu, Yanchao Wang, Hanyu Liu, Mao-sheng Miao and Yanming Ma | | Theoretical determination of surface structures can be problematic when the configuration space is complex. Here Lu et al. develop an automated surface structure-searching method, and when applied on studying surface reconstruction of a diamond surface, self-assembled carbon nanotubes are found. | | 16 April 2014 | doi: 10.1038/ncomms4666 | | Physical Sciences Materials science | Variation in Arabidopsis flowering time associated with cis-regulatory variation in CONSTANS OPEN | | Ulises Rosas, Yu Mei, Qiguang Xie, Joshua A. Banta, Royce W. Zhou, Gabriela Seufferheld, Silvia Gerard, Lucy Chou, Naeha Bhambhra, Jennifer Deane Parks, Jonathan M. Flowers, C. Robertson McClung, Yoshie Hanzawa and Michael D. Purugganan | | The transcription factor CONSTANS regulates the timing of flowering in Arabidopsis. Rosas et al. report that genetic variation in the cis-regulatory regions of this gene contributes to natural phenotypic variation in flowering time. | | 16 April 2014 | doi: 10.1038/ncomms4651 | | Biological Sciences Genetics Plant sciences | Determining the polarization state of an extreme ultraviolet free-electron laser beam using atomic circular dichroism | | T. Mazza, M. Ilchen, A. J. Rafipoor, C. Callegari, P. Finetti, O. Plekan, K. C. Prince, R. Richter, M. B. Danailov, A. Demidovich, G. De Ninno, C. Grazioli, R. Ivanov, N. Mahne, L. Raimondi, C. Svetina, L. Avaldi, P. Bolognesi, M. Coreno, P. O'Keeffe et al. | | Intense extreme UV and X-ray coherent sources are set to revolutionize numerous research areas, yet characterization of their polarization remains elusive. Here, Mazza et al. measure the polarization state of circularly polarized extreme UV light from a free-electron laser using circular dichroism. | | 16 April 2014 | doi: 10.1038/ncomms4648 | | Physical Sciences Optical physics | MHC-I expression renders catecholaminergic neurons susceptible to T-cell-mediated degeneration | | Carolina Cebrián, Fabio A. Zucca, Pierluigi Mauri, Julius A. Steinbeck, Lorenz Studer, Clemens R. Scherzer, Ellen Kanter, Sadna Budhu, Jonathan Mandelbaum, Jean P. Vonsattel, Luigi Zecca, John D. Loike and David Sulzer | | MHC-I is expressed in neurons where it is implicated in synaptic plasticity and neuron regeneration. Here, Cebrián et al. report an increase in MHC-I expression in brain neurons from Parkinson's disease patients, which is triggered by microglial activation and circulating dopamine. | | 16 April 2014 | doi: 10.1038/ncomms4633 | | Biological Sciences Immunology Neuroscience | One-dimensional self-confinement promotes polymorph selection in large-area organic semiconductor thin films | | Gaurav Giri, Ruipeng Li, Detlef-M. Smilgies, Er Qiang Li, Ying Diao, Kristina M. Lenn, Melanie Chiu, Debora W. Lin, Ranulfo Allen, Julia Reinspach, Stefan C. B. Mannsfeld, Sigurdur T. Thoroddsen, Paulette Clancy, Zhenan Bao and Aram Amassian | | Solution-shearing process has been recently developed as a large-area coating method of producing crystallographic organic thin films, but how this process works is still unknown. Giri et al. monitor it in real time and find the degree of polymorphism can be tailored by varying solution conditions. | | 16 April 2014 | doi: 10.1038/ncomms4573 | | Chemical Sciences Materials science Nanotechnology | | | | | | | | Advertisement | | nature.com webcasts
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