| | | Can't view this email? Click here to view in your browser. | | | | | Volume 498 Number 7452 | | | | nature | | The science that matters. Every week. | | | | | | | | |
| | | | | | | | | | | | | | A*STAR Research - Highlighting the best of research at the Agency for Science, Technology and Research (A*STAR), Singapore's premier research organization Recent Highlights Optics: Statistics light the way | Plasmonics: A wave without diffraction | Genomics: A rare view of gene regulation The new print edition of A*STAR Research is now available! | | | | | | | | | | |
| | Jump to the content that matters to you | | | | | |
| | | | | | Special - The quantum atom | | | | | | Niels Bohr introduced what became known as the Bohr model of atomic structure in 1913. The model has since been superseded but the familiar Solar System like structure was based on sound foundations and has served theorists and experiments well down the years. We mark this centenary with a special issue of Nature reviewing the past, present and future of the theory of atom structure. ▼ more | | | | | | | | | | | | | | Ice-sheet mass balance and climate change | | In 2007, the Intergovernmental Panel on Climate Change was unable to provide an estimate for ice sheet contributions to sea level rise through dynamic processes such as ice acceleration due to changes in subglacial hydrology. Six years on and there is a lot more data on ice sheet mass balance change, and this review crunches the numbers. The conclusion is that accelerated loss from Greenland is a robust finding, but that loss from Antarctica may be much less marked than previously thought. | | | | | | | | | | | | | | Chemical mapping of a single molecule by plasmon-enhanced Raman scattering | | An imaging technique with chemical recognition and unprecedented resolution, offering a detailed view inside single molecules, is described in Nature this week. The work describes enhancements to Raman spectroscopy — a technology widely used to identify molecules by detecting their signature molecular vibrations — that make it effective at the single-molecule level with spatial resolution below 1 nm. The technique opens a new path to photochemistry at the single-molecule level, offering the potential to design, control, and engineer the functionality of molecules on demand. | | | | | | | | | | | | | | | | | | | | | | | | Nature Outlook: Sleep Researchers are defining the various functions of sleep, from how we learn to the regulation of metabolism and immunity. New ways to treat troubled sleeping are being developed, and better sleep practice can help people with mood disorders. Access the Outlook free online for six months. Produced with support from: ResMed | | | | | | | | | | | | | | | | | | | | | Stepwise acquisition of vocal combinatorial capacity in songbirds and human infants | | Both birdsong and the vocalization of human language depend on the arrangement of vocal elements into particular sequences, but it is not clear if these superficially similar capacities are related. This study shows that in two bird species and in pre-verbal human infants, vocal transitions and permutations are established through a common stepwise pattern rather than a single developmental shift. This suggests that there is a common generative process conserved across these species in constructing new vocal communication patterns. | | | | | | | | | | | | | | | | In this week's podcast: time cloaks, extreme species of atoms, and what's really been happening to ice sheets? | | | | | | | |
| | | | | | | | | | | | | | | | | | | | | | | | Quantum physics: The quantum atom ▶ | | | | One hundred years after Niels Bohr published his model of the atom, a special issue of Nature explores its legacy — and how much there is still to learn about atomic structure. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Theoretical physics: Sizing up atoms ▶ | | | | Niels Bohr's model of the structure of the atom raised the question of how large an atom can be. One hundred years on, the issue is still unresolved. Two physicists discuss the theoretical limits of atomic and nuclear size. | | | | | | | | | | | |
| | | | | | | | | | | | | | | | | | | | | | | | | The paper trail ▶ | | | | Scientists must embrace funding-agency efforts to track research outputs and encourage open access to the literature. | | | | | | | | | | | | Moral authority ▶ | | | | Research must be seen to be accountable, even if that means hanging on to redundant reviews. | | | | | | | | | | | | | | | | | | | | | | | | | | | | Seven days: 31 May–6 June 2013 ▶ | | | | The week in science: Transgenic wheat escapes from US testing fields, H7N9 returns after lull in China, and Martian minerals get mapped. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | | | | | | | | | | For many years, science in the Asia-Pacific region has been dominated by Japan. However, as seen through the lens of the Nature Publishing Index (NPI), the fastest growth in high-quality research is now coming from other countries- in particular China and Singapore. The 2012 NPI Asia-Pacific presents an analysis of the dynamic changes in the region’s scientific publishing record. www.natureasia.com/en/publishing-index/asia-pacific | | | | | | | | | | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | X-ray structure of the mammalian GIRK2–βγ G-protein complex ▶ | | | | Matthew R. Whorton, Roderick MacKinnon | | | | An X-ray structure and electrophysiological analysis of mammalian G-protein-gated inward rectifier potassium channel GIRK2 in complex with βγ reveals a pre-open channel structure consistent with channel activation by membrane delimited G-protein subunits. | | | | | | | | | | | | Structural mechanism of cytosolic DNA sensing by cGAS ▶ | | | | Filiz Civril, Tobias Deimling, Carina C. de Oliveira Mann et al. | | | | Cytosolic DNA arising from intracellular bacterial or viral infections induces type I interferon through activation of the DNA sensor cGAS, which catalyses the synthesis of cyclic dinucleotide which in turn activates STING; here the crystal structures of a carboxy-terminal fragment of cGAS alone and in complex with UTP and DNA–ATP–GTP complex are determined. | | | | | | | | | | | | | | | | BACH2 represses effector programs to stabilize Treg-mediated immune homeostasis ▶ | | | | Rahul Roychoudhuri, Kiyoshi Hirahara, Kambiz Mousavi et al. | | | | Diverse autoimmune and allergic diseases are associated with polymorphisms in a locus encoding the transcription factor BACH2; here, BACH2 is shown to be a broad regulator of immune activation that stabilizes the differentiation of Treg cells by repressing commitment of CD4+ T cells to alternate cell fates. | | | | | | | | | | | | | | | | | | | | | | | | High-resolution analysis with novel cell-surface markers identifies routes to iPS cells ▶ | | | | James O'Malley, Stavroula Skylaki, Kumiko A. Iwabuchi et al. | | | | Cellular reprogramming is shown to occur in an ordered, stepwise manner, marked by changes in the cell-surface markers CD44, ICAM1 and Nanog–eGFP; molecular characterization of discrete subpopulations of partially reprogrammed cells shows that reprogramming is not simply the reversal of the normal development process. | | | | | | | | | | | | MBNL proteins repress ES-cell-specific alternative splicing and reprogramming ▶ | | | | Hong Han, Manuel Irimia, P. Joel Ross et al. | | | | This study identifies MBNL proteins as negative regulators of alternative splicing events that are differentially regulated between ES cells and other cell types; several lines of evidence show that these proteins repress an ES cell alternative splicing program and the reprogramming of somatic cells to induced pluripotent stem cells. | | | | | | | | | | | | | | | | Unusual architecture of the p7 channel from hepatitis C virus ▶ | | | | Bo OuYang, Shiqi Xie, Marcelo J. Berardi et al. | | | | The structure of the oligomeric hepatitis C virus viroporin p7 protein, solved by NMR spectroscopy, is reported; this protein can self-assemble into a channel complex that conducts cations and has a funnel-like channel architecture. | | | | | | | | | | | | | | | | | | | | The oldest known primate skeleton and early haplorhine evolution ▶ | | | | Xijun Ni, Daniel L. Gebo, Marian Dagosto et al. | | | | Understanding the earliest phases of primate evolution is obscured by gaps in the fossil record, but some light is shed by the discovery of a nearly complete and substantially articulated skeleton of a tiny primate from the early Eocene; the new primate lies near the pivotal evolutionary dichotomy separating the tarsier and anthropoid lineages and it possesses features that are characteristic of subsequent members of both lineages. | | | | | | | | | | | | Rats maintain an overhead binocular field at the expense of constant fusion ▶ | | | | Damian J. Wallace, David S. Greenberg, Juergen Sawinski et al. | | | | In freely moving rodents, eye movements serve to keep the visual fields of the two eyes continuously overlapping overhead at the expense of continuous alignment, a strategy that may have evolved to maintain constant overhead surveillance of predators. | | | | | | | | | | | | KAT5 tyrosine phosphorylation couples chromatin sensing to ATM signalling ▶ | | | | Abderrahmane Kaidi, Stephen P. Jackson | | | | KAT5 tyrosine phosphorylation, mediated by the tyrosine kinase c-Abl, increases after DNA damage, promoting KAT5 binding to histone H3K9me3, which triggers KAT5-mediated acetylation of the ATM kinase; this promotes the activation of the DNA damage checkpoint and cell survival. | | | | | | | | | | | | | | | | Architecture and evolution of a minute plant genome OPEN ▶ | | | | Enrique Ibarra-Laclette, Eric Lyons, Gustavo Hernández-Guzmán et al. | | | | The genome of the carnivorous bladderwort plant Utricularia gibba is described here; despite having undergone at least three rounds of whole-genome duplication, its genome is unusually small and virtually devoid of intergenic DNA. | | | | | | | | | | | | Gut metagenome in European women with normal, impaired and diabetic glucose control ▶ | | | | Fredrik H. Karlsson, Valentina Tremaroli, Intawat Nookaew et al. | | | | The faecal metagenome of a cohort of 145 European women with normal, impaired or diabetic glucose control was characterized and discriminant metagenomic markers for type 2 diabetes were identified; the discriminant markers differed from those of a recent Chinese cohort, suggesting that metagenomic predictive tools may need to be specific for age and geographic location. | | | | | | | | | | | | | | | | A key role for mitochondrial gatekeeper pyruvate dehydrogenase in oncogene-induced senescence ▶ | | | | Joanna Kaplon, Liang Zheng, Katrin Meissl et al. | | | | Pyruvate dehydrogenase (PDH) is identified as a crucial mediator of BRAFV600E-induced cellular senescence: PDH is activated by BRAF-mediated suppression of PDK1, enhancing oxidative glucose metabolism, and PDK1 depletion eradicates mutant BRAF melanomas, indicating that this relationship between cell senescence and metabolism might be exploited therapeutically. | | | | | | | | | | | | | | | | Control of angiogenesis by AIBP-mediated cholesterol efflux ▶ | | | | Longhou Fang, Soo-Ho Choi, Ji Sun Baek et al. | | | | Gene-expression studies are used to elucidate the relationship between cholesterol regulation and angiogenesis: apolipoprotein A-1 binding protein (AIBP) is found to enhance cholesterol influx from endothelial cells to high-density lipoprotein, and the resulting cholesterol depletion alters membrane lipid order in the vasculature, leading to decreased vascular endothelial growth factor receptor signalling. | | | | | | | | | | | | Structure-guided discovery of the metabolite carboxy-SAM that modulates tRNA function ▶ | | | | Jungwook Kim, Hui Xiao, Jeffrey B. Bonanno et al. | | | | Members of the SAM-dependent methyltransferase superfamily are involved in the modification of wobble uridine to 5-oxacetyl uridine in Gram-negative bacteria; CmoA converts SAM to carboxy-SAM (Cx-SAM; a metabolite that was unknown previously), and CmoB uses Cx-SAM to convert 5-hydroxyuridine to 5-oxyacetyl uridine in tRNA. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Brief Communications Arising | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | X-ray structure of the mammalian GIRK2–βγ G-protein complex ▶ | | | | Matthew R. Whorton & Roderick MacKinnon | | | | An X-ray structure and electrophysiological analysis of mammalian G-protein-gated inward rectifier potassium channel GIRK2 in complex with βγ reveals a pre-open channel structure consistent with channel activation by membrane delimited G-protein subunits. | | | | | | | | | | | | Unusual architecture of the p7 channel from hepatitis C virus ▶ | | | | Bo OuYang, Shiqi Xie, Marcelo J. Berardi, Xinhao Zhao, Jyoti Dev et al. | | | | The structure of the oligomeric hepatitis C virus viroporin p7 protein, solved by NMR spectroscopy, is reported; this protein can self-assemble into a channel complex that conducts cations and has a funnel-like channel architecture. | | | | | | | | | | | | | | | | Structural mechanism of cytosolic DNA sensing by cGAS ▶ | | | | Filiz Civril, Tobias Deimling, Carina C. de Oliveira Mann, Andrea Ablasser, Manuela Moldt et al. | | | | Cytosolic DNA arising from intracellular bacterial or viral infections induces type I interferon through activation of the DNA sensor cGAS, which catalyses the synthesis of cyclic dinucleotide which in turn activates STING; here the crystal structures of a carboxy-terminal fragment of cGAS alone and in complex with UTP and DNA–ATP–GTP complex are determined. | | | | | | | | | | | | | | | | KAT5 tyrosine phosphorylation couples chromatin sensing to ATM signalling ▶ | | | | Abderrahmane Kaidi & Stephen P. Jackson | | | | KAT5 tyrosine phosphorylation, mediated by the tyrosine kinase c-Abl, increases after DNA damage, promoting KAT5 binding to histone H3K9me3, which triggers KAT5-mediated acetylation of the ATM kinase; this promotes the activation of the DNA damage checkpoint and cell survival. | | | | | | | | | | | | | | | | Control of angiogenesis by AIBP-mediated cholesterol efflux ▶ | | | | Longhou Fang, Soo-Ho Choi, Ji Sun Baek, Chao Liu, Felicidad Almazan et al. | | | | Gene-expression studies are used to elucidate the relationship between cholesterol regulation and angiogenesis: apolipoprotein A-1 binding protein (AIBP) is found to enhance cholesterol influx from endothelial cells to high-density lipoprotein, and the resulting cholesterol depletion alters membrane lipid order in the vasculature, leading to decreased vascular endothelial growth factor receptor signalling. | | | | | | | | | | | | Structure-guided discovery of the metabolite carboxy-SAM that modulates tRNA function ▶ | | | | Jungwook Kim, Hui Xiao, Jeffrey B. Bonanno, Chakrapani Kalyanaraman, Shoshana Brown et al. | | | | Members of the SAM-dependent methyltransferase superfamily are involved in the modification of wobble uridine to 5-oxacetyl uridine in Gram-negative bacteria; CmoA converts SAM to carboxy-SAM (Cx-SAM; a metabolite that was unknown previously), and CmoB uses Cx-SAM to convert 5-hydroxyuridine to 5-oxyacetyl uridine in tRNA. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | The spin Hall effect in a quantum gas ▶ | | | | M. C. Beeler, R. A. Williams, K. Jiménez-GarcÃa et al. | | | | The spin Hall effect, whereby flowing particles experience orthogonally directed, spin-dependent Lorentz-like forces, is observed in a quantum-degenerate gas and used to produce a cold-atom spin transistor. | | | | | | | | | | | | A temporal cloak at telecommunication data rate ▶ | | | | Joseph M. Lukens, Daniel E. Leaird, Andrew M. Weiner | | | | The 'time cloak' experiment is extended here using a time analogue of the Talbot effect in optics — in which a plane wave incident on a diffraction grating produces repeated images of the grating at regular distances — to show that almost half of the time axis can be concealed. | | | | | | | | | | | | | | | | | | | | | | | | Chemical mapping of a single molecule by plasmon-enhanced Raman scattering ▶ | | | | R. Zhang, Y. Zhang, Z. C. Dong et al. | | | | Chemical mapping of a single molecule by optical means down to subnanometre resolution is achieved by spectrally matching the resonance of a nanocavity plasmon to the vibronic transitions of the molecules being studied, using tip-enhanced Raman scattering. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Ice-sheet mass balance and climate change ▶ | | | | Edward Hanna, Francisco J. Navarro, Frank Pattyn et al. | | | | A review of the past six years of research on ice-sheet mass-balance change shows that accelerated loss from Greenland is a robust finding, but that loss from Antarctica is probably far lower than previously thought. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Careers related news & comment | | | | | | | | | | | | | | | | | | | | | |  naturejobs.com Science jobs of the week | | | | | | | | | | | | | | | | | | | | No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. Keep up-to-date with the latest sector trends, vote in our reader poll and sign-up to receive the monthly Naturejobs newsletter. | | | | | | | | | | • Natureevents Directory featured events | | | | | | | | | |  natureevents directory featured events | | | | | | | | | | Natureevents Directory is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. Featured across Nature Publishing Group journals and centrally at natureevents.com it is an essential reference guide to scientific events worldwide. | | | | | | | | | | | | | | | | | | | | | | | | | Your email address is in the Nature mailing list. You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/nams/svc/myaccount (You will need to log in to be recognised as a nature.com registrant). For further technical assistance, please contact subscriptions@nature.com For other enquiries, please contact feedback@nature.com | | Nature Publishing Group | 75 Varick Street, 9th floor | New York | NY 10013-1917 | USA
Nature Publishing Group's offices: Principal offices: London - New York - Tokyo Worldwide offices: Basingstoke - Boston - Buenos Aires - Delhi - Hong Kong - Madrid - Melbourne - Munich - Paris - San Francisco - Seoul - Washington DC
Macmillan Publishers Limited is a company incorporated in England and Wales under company number 785998 and whose registered office is located at Brunel Road, Houndmills, Basingstoke, Hampshire RG21 6XS. © 2013 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. | | | |
No comments:
Post a Comment