The ISME Journal - Table of Contents alert Volume 6 Issue 11

TABLE OF CONTENTS Volume 6, Issue 11 (November 2012) In this issue Perspective Mini-review Original Articles Corrigendum Also new AOP Sign up for e-alerts Recommend to your library Web feed Subscribe Advertisement Check out ISMEJ’s most downloaded article in September Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms Open In this study, Alexander Tveit et al applied a combined metagenomic and metatranscriptomic approach on two Arctic peat soils to investigate the identity and the gene pool of the microbiota driving the SOC degradation in the seasonally thawed active layers. Based on the in-depth characterisation of the microbes and their genes, they conclude that these Arctic peat soils will turn into CO2sources owing to increased active layer depth and prolonged growing season.   Perspective Top MICROBIAL POPULATION AND COMMUNITY ECOLOGY Metabolic specialization and the assembly of microbial communities David R Johnson, Felix Goldschmidt, Elin E Lilja and Martin Ackermann ISME J 2012 6: 1985-1991; advance online publication, May 17, 2012; 10.1038/ismej.2012.46 Abstract | Full Text Mini-review Top Functional and ecological consequences of saprotrophic fungus–grazer interactions Thomas W Crowther, Lynne Boddy and T Hefin Jones ISME J 2012 6: 1992-2001; advance online publication, June 21, 2012; 10.1038/ismej.2012.53 Abstract | Full Text Original Articles Top MICROBIAL POPULATION AND COMMUNITY ECOLOGY Convergent development of anodic bacterial communities in microbial fuel cells Matthew D Yates, Patrick D Kiely, Douglas F Call, Hamid Rismani-Yazdi, Kyle Bibby, Jordan Peccia, John M Regan and Bruce E Logan ISME J 2012 6: 2002-2013; advance online publication, May 10, 2012; 10.1038/ismej.2012.42 Abstract | Full Text Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates Jennifer L Bowen, Hilary G Morrison, John E Hobbie and Mitchell L Sogin ISME J 2012 6: 2014-2023; advance online publication, June 28, 2012; 10.1038/ismej.2012.47 Abstract | Full Text Dynamics of ammonia-oxidizing archaea and bacteria populations and contributions to soil nitrification potentials Anne E Taylor, Lydia H Zeglin, Thomas A Wanzek, David D Myrold and Peter J Bottomley ISME J 2012 6: 2024-2032; advance online publication, June 14, 2012; 10.1038/ismej.2012.51 Abstract | Full Text MICROBE-MICROBE AND MICROBE-HOST INTERACTIONS Host genetic and environmental effects on mouse intestinal microbiota James H Campbell, Carmen M Foster, Tatiana Vishnivetskaya, Alisha G Campbell, Zamin K Yang, Ann Wymore, Anthony V Palumbo, Elissa J Chesler and Mircea Podar ISME J 2012 6: 2033-2044; advance online publication, June 14, 2012; 10.1038/ismej.2012.54 Abstract | Full Text Functional responses of methanogenic archaea to syntrophic growth Christopher B Walker, Alyssa M Redding-Johanson, Edward E Baidoo, Lara Rajeev, Zhili He, Erik L Hendrickson, Marcin P Joachimiak, Sergey Stolyar, Adam P Arkin, John A Leigh, Jizhong Zhou, Jay D Keasling, Aindrila Mukhopadhyay and David A Stahl ISME J 2012 6: 2045-2055; advance online publication, June 28, 2012; 10.1038/ismej.2012.60 Abstract | Full Text INTEGRATED GENOMICS AND POST-GENOMICS APPROACHES IN MICROBIAL ECOLOGY Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis Thomas Danhorn, Curtis R Young and Edward F DeLong ISME J 2012 6: 2056-2066; advance online publication, April 26, 2012; 10.1038/ismej.2012.35 Abstract | Full Text Targeted recovery of novel phylogenetic diversity from next-generation sequence data Michael D J Lynch, Andrea K Bartram and Josh D Neufeld ISME J 2012 6: 2067-2077; advance online publication, July 12, 2012; 10.1038/ismej.2012.50 Abstract | Full Text GEOMICROBIOLOGY AND MICROBIAL CONTRIBUTIONS TO GEOCHEMICAL CYCLES Three manganese oxide-rich marine sediments harbor similar communities of acetate-oxidizing manganese-reducing bacteria Verona Vandieken, Michael Pester, Niko Finke, Jung-Ho Hyun, Michael W Friedrich, Alexander Loy and Bo Thamdrup ISME J 2012 6: 2078-2090; advance online publication, May 10, 2012; 10.1038/ismej.2012.41 Abstract | Full Text MICROBIAL ECOLOGY AND FUNCTIONAL DIVERSITY OF NATURAL HABITATS Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis David Berry, Clarissa Schwab, Gabriel Milinovich, Jochen Reichert, Karim Ben Mahfoudh, Thomas Decker, Marion Engel, Brigitte Hai, Eva Hainzl, Susanne Heider, Lukas Kenner, Mathias Müller, Isabella Rauch, Birgit Strobl, Michael Wagner, Christa Schleper, Tim Urich and Alexander Loy ISME J 2012 6: 2091-2106; advance online publication, May 10, 2012; 10.1038/ismej.2012.39 Abstract | Full Text Influence of geogenic factors on microbial communities in metallogenic Australian soils Frank Reith, Joel Brugger, Carla M Zammit, Adrienne L Gregg, Katherine C Goldfarb, Gary L Andersen, Todd Z DeSantis, Yvette M Piceno, Eoin L Brodie, Zhenmei Lu, Zhili He, Jizhong Zhou and Steven A Wakelin ISME J 2012 6: 2107-2118; advance online publication, June 7, 2012; 10.1038/ismej.2012.48 Abstract | Full Text Unexpected and novel putative viruses in the sediments of a deep-dark permanently anoxic freshwater habitat Guillaume Borrel, Jonathan Colombet, Agnès Robin, Anne-Catherine Lehours, David Prangishvili and Télesphore Sime-Ngando ISME J 2012 6: 2119-2127; advance online publication, May 31, 2012; 10.1038/ismej.2012.49 Abstract | Full Text One millimetre makes the difference: high-resolution analysis of methane-oxidizing bacteria and their specific activity at the oxic–anoxic interface in a flooded paddy soil Andreas Reim, Claudia Lüke, Sascha Krause, Jennifer Pratscher and Peter Frenzel ISME J 2012 6: 2128-2139; advance online publication, June 14, 2012; 10.1038/ismej.2012.57 Abstract | Full Text MICROBIAL ECOSYSTEM IMPACTS Macrofauna regulate heterotrophic bacterial carbon and nitrogen incorporation in low-oxygen sediments William R Hunter, Bart Veuger and Ursula Witte ISME J 2012 6: 2140-2151; advance online publication, May 17, 2012; 10.1038/ismej.2012.44 Abstract | Full Text Corrigendum Top Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis Thomas Danhorn, Curtis R Young and Edward F DeLong ISME J 2012 6: 2152; 10.1038/ismej.2012.52 Full Text Advertisement If you are unable to access the articles in this Table of Contents e-alert, your library may not subscribe to this journal. 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