Tuesday, October 16, 2012

Nature Communications - 16 October 2012

 
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16 October 2012
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The genetic prehistory of southern Africa OPEN
Joseph K. Pickrell, Nick Patterson, Chiara Barbieri, Falko Berthold, Linda Gerlach, Tom Güldemann, Blesswell Kure, Sununguko Wata Mpoloka, Hirosi Nakagawa, Christfried Naumann, Mark Lipson, Po-Ru Loh, Joseph Lachance, Joanna Mountain, Carlos D. Bustamante, Bonnie Berger, Sarah A. Tishkoff, Brenna M. Henn, Mark Stoneking, David Reich and Brigitte Pakendorf
Hunter-gatherer populations in Africa preserve unique information about human history, but genetic sub-structures of these populations remain unclear. Using newly designed microarray and statistical methods, these authors analyse genetic compositions of southern African populations and reveal an ancient link between southern and eastern Africa.
16 Oct | Nat Commun 3:1143 doi:10.1038/ncomms2140 (2012)
Biological sciences Genetics 
Abstract | Full Text | PDF (386 kB) |
Supplementary Information

Regional boreal biodiversity peaks at intermediate human disturbance
S.J. Mayor, J.F. Cahill Jr, F. He, P. Sólymos and S. Boutin
Human influence on an ecosystem generates a predictable pattern in biodiversity. In a study of boreal plant communities, Mayor et al. show that the species richness of native vascular plants fits the predicted hump-shaped relationship to human disturbance, reaching a maximum when half of the landscape is disturbed.
16 Oct | Nat Commun 3:1142 doi:10.1038/ncomms2145 (2012)
Biological sciences Ecology 
Plant sciences
Abstract | Full Text | PDF (492 kB) |
Supplementary Information

Lfng regulates the synchronized oscillation of the mouse segmentation clock via trans-repression of Notch signalling
Yusuke Okubo, Takeshi Sugawara, Natsumi Abe-Koduka, Jun Kanno, Akatsuki Kimura and Yumiko Saga
The mouse segmentation clock regulates the periodicity of somite formation. Okubo and colleagues investigate the mechanisms underlying the synchronization of the clock in embryonic chimaeras and find that the synchronization is regulated by the protein Lfng, which represses Notch signalling in neighbouring cells.
16 Oct | Nat Commun 3:1141 doi:10.1038/ncomms2133 (2012)
Biological sciences Developmental biology 
Abstract | Full Text | PDF (2,707 kB) |
Supplementary Information

Direct isolation and RNA-seq reveal environment-dependent properties of engrafted neural stem/progenitor cells
Hiromi Kumamaru, Yasuyuki Ohkawa, Hirokazu Saiwai, Hisakata Yamada, Kensuke Kubota, Kazu Kobayakawa, Koichi Akashi, Hideyuki Okano, Yukihide Iwamoto and Seiji Okada
Studies on neural stem and progenitor cells have shown they may be useful in treating spinal cord injuries, but the results are variable. Kumamaru et al. transplant these cells in injured spinal cords of mice, and find that their therapeutic properties are dynamically altered depending on their environment.
16 Oct | Nat Commun 3:1140 doi:10.1038/ncomms2132 (2012)
Biological sciences Cell biology 
Neuroscience 
Abstract | Full Text | PDF (2,835 kB) |
Supplementary Information

Bioinspired hollow semiconductor nanospheres as photosynthetic nanoparticles
Jianhua Sun, Jinshui Zhang, Mingwen Zhang, Markus Antonietti, Xianzhi Fu and Xinchen Wang
Photosynthesis occurs at the thylakoid membrane, which acts as a scaffold, precisely arranging functional proteins and electron carriers. Sun et al. synthesize hollow photosynthetic nanospheres that function as light-harvesting antennae and structured scaffolds that improve photoredox catalysis.
16 Oct | Nat Commun 3:1139 doi:10.1038/ncomms2152 (2012)
Chemical sciences Materials science Nanotechnology
Abstract | Full Text | PDF (884 kB) |
Supplementary Information

Ultra-precise insertion of functional monomers in chain-growth polymerizations OPEN
Mirela Zamfir and Jean-François Lutz
Copolymers prepared by controlled radical chain-growth polymerizations usually contain ill-defined monomer sequences. Here, successive feeds of donor and acceptor comonomers are used to control the primary structure of the synthesized copolymers with very high accuracy.
16 Oct | Nat Commun 3:1138 doi:10.1038/ncomms2151 (2012)
Chemical sciences Materials science 
Abstract | Full Text | PDF (618 kB) |
Supplementary Information

Annotation of microsporidian genomes using transcriptional signals
Eric Peyretaillade, Nicolas Parisot, Valérie Polonais, Sébastien Terrat, Jérémie Denonfoux, Eric Dugat-Bony, Ivan Wawrzyniak, Corinne Biderre-Petit, Antoine Mahul, Sébastien Rimour, Olivier Gonçalves, Stéphanie Bornes, Frédéric Delbac, Brigitte Chebance, Simone Duprat, Gaëlle Samson, Michael Katinka, Jean Weissenbach, Patrick Wincker and Pierre Peyret
Microsporidia are widespread human parasites, but limited genome annotation has hampered efforts to understand their biology. Peyretaillade et al. use sequence motifs upstream of start codons to annotate or re-annotate microsporidian genomes and find new genes potentially involved in interactions with the host.
16 Oct | Nat Commun 3:1137 doi:10.1038/ncomms2156 (2012)
Biological sciences Microbiology
Abstract | Full Text | PDF (431 kB) |
Supplementary Information

Endocannabinoid-Goα signalling inhibits axon regeneration in Caenorhabditis elegans by antagonizing Gqα-PKC-JNK signalling OPEN
Strahil Iv. Pastuhov, Kota Fujiki, Paola Nix, Shuka Kanao, Michael Bastiani, Kunihiro Matsumoto and Naoki Hisamoto
Axon regeneration in C. elegans is positively regulated by the JNK/MAP kinase pathway. Pastuhov and colleagues identify the endocannabinoid anandamide as a negative regulator of this pathway and show that anandamide inhibits axon regeneration in mature neurons after axotomy.
16 Oct | Nat Commun 3:1136 doi:10.1038/ncomms2136 (2012)
Biological sciences Neuroscience 
Abstract | Full Text | PDF (622 kB) |
Supplementary Information

A four-dimensional X-ray tomographic microscopy study of bubble growth in basaltic foam
Don R. Baker, Francesco Brun, Cedrick O'Shaughnessy, Lucia Mancini, Julie L. Fife and Mark Rivers
Changes in bubble foam structure influence magma strength. Here, Baker et al. measure bubble size and wall thickness of basaltic foams and find that basaltic magmas are most likely to fail immediately upon vesiculation, but a permeability increase within a few seconds may reduce the risk of explosive eruptions.
16 Oct | Nat Commun 3:1135 doi:10.1038/ncomms2134 (2012)
Earth sciences Biogeochemistry 
Geology and geophysics 
Abstract | Full Text | PDF (999 kB) |
Supplementary Information

Prion protein facilitates uptake of zinc into neuronal cells OPEN
Nicole T. Watt, David R. Taylor, Talitha L. Kerrigan, Heledd H. Griffiths, Jo V. Rushworth, Isobel J. Whitehouse and Nigel M. Hooper
Prion proteins are implicated in a range of neurodegenerative diseases, which are, in part, due to a disruption of metal homeostasis. Watt et al. use selective antagonists to show that prion proteins mediate zinc uptake by interacting with GluA2-lacking, GluA1-containing AMPA receptors.
16 Oct | Nat Commun 3:1134 doi:10.1038/ncomms2135 (2012)
Biological sciences Cell biology 
Neuroscience 
Abstract | Full Text | PDF (2,683 kB) |
Supplementary Information

Molecular reorientation of a nematic liquid crystal by thermal expansion OPEN
Young-Ki Kim, Bohdan Senyuk and Oleg D. Lavrentovich
The orientational order of nematic liquid crystals is a property that is controllable by external parameters such as electromagnetic fields and pressure gradients. Lavrentovich and co-workers demonstrate that thermal expansion can also induce orientational order that results in a flow of the liquid crystals.
16 Oct | Nat Commun 3:1133 doi:10.1038/ncomms2073 (2012)
Physical sciences Condensed matter 
Materials science 
Abstract | Full Text | PDF (988 kB) |
Supplementary Information

A novel phosphor for glareless white light-emitting diodes
Hisayoshi Daicho, Takeshi Iwasaki, Kiminori Enomoto, Yasutaka Sasaki, Yuzo Maeno, Yu Shinomiya, Shinobu Aoyagi, Eiji Nishibori, Makoto Sakata, Hiroshi Sawa, Satoru Matsuishi and Hideo Hosono
Light-emitting diodes are attractive sources of light used in an increasing range of applications. This study presents a novel europium-based phosphor that gives rise to a substantial reduction in the glare that often makes LEDs uncomfortable to the human eye.
16 Oct | Nat Commun 3:1132 doi:10.1038/ncomms2138 (2012)
Physical sciences Materials science 
Optical physics
Abstract | Full Text | PDF (1,098 kB) |
Supplementary Information

Correlative infrared–electron nanoscopy reveals the local structure–conductivity relationship in zinc oxide nanowires OPEN
J.M. Stiegler, R. Tena-Zaera, O. Idigoras, A. Chuvilin and R. Hillenbrand
High-resolution characterisation techniques enable us to better understand the properties of nanoscale materials and devices. By combining electron microscopy and infrared nanoscopy, Stiegler et al. demonstrate a general approach to simultaneously probe the structural, chemical and electronic properties of a nanostructure.
16 Oct | Nat Commun 3:1131 doi:10.1038/ncomms2118 (2012)
Physical sciences Condensed matter 
Nanotechnology 
Abstract | Full Text | PDF (1,451 kB) |
Supplementary Information

Electrografting of calix[4]arenediazonium salts to form versatile robust platforms for spatially controlled surface functionalization
Alice Mattiuzzi, Ivan Jabin, Claire Mangeney, Clément Roux, Olivia Reinaud, Luis Santos, Jean-François Bergamini, Philippe Hapiot and Corinne Lagrost
The spontaneous adsorption of alkanethiols is widely utilized to fabricate functional surfaces but gives limited stability and regularity. Mattiuzzi et al. report a method that uses preorganized platforms (rigid tetrapodant calix[4]arenes), which allows further surface functionalization and spatial control.
16 Oct | Nat Commun 3:1130 doi:10.1038/ncomms2121 (2012)
Chemical sciences Analytical chemistry 
Physical chemistry 
Abstract | Full Text | PDF (1,191 kB) |
Supplementary Information

A universal critical density underlying the physics of electrons at the LaAlO3 /SrTiO3 interface
Arjun Joshua, S. Pecker, J. Ruhman, E. Altman and S. Ilani
When lanthanum aluminate and strontium titanate are brought together, a 2D electron gas with many interesting properties forms at the interface. Magnetotransport results obtained by Joshua et al. suggest that the behaviour of this interface is governed by a small but fundamental set of electronic bands.
16 Oct | Nat Commun 3:1129 doi:10.1038/ncomms2116 (2012)
Physical sciences Condensed matter 
Abstract | Full Text | PDF (600 kB) |
Supplementary Information

Level statistics of disordered spin-1/2 systems and materials with localized Cooper pairs
Emilio Cuevas, Mikhail Feigel'man, Lev Ioffe and Marc Mezard
Quantum phase transitions are most commonly found to occur at zero temperature. Cuevas et al. present numerical evidence confirming that a quantum phase transition can also occur at finite temperature, provided strong disorder is present.
16 Oct | Nat Commun 3:1128 doi:10.1038/ncomms2115 (2012)
Physical sciences Condensed matter 
Theoretical physics
Abstract | Full Text | PDF (467 kB) |
Supplementary Information
 
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