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| | | | | | | Olympus launches the new IX3 series - the next generation of inverted microscope systems. Olympus has released the innovative new IX3 series of inverted research microscope systems for effortless, intuitive live cell imaging and clinical analysis. The new systems offer exceptional ease-of-use and unprecedented optical flexibility via a new, customisable light path. New components can be easily slid into the light path using a series of swappable decks. | | | | | | | | |
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| | | | | ENCODE: guidebook to the human genome | The ENCODE (Encyclopedia of DNA Elements) project aims to describe all functional elements encoded in the human genome. Nine years on from ENCODE's launch, its main efforts culminate this week with the coordinated publication of thirty papers, six of them in this issue of Nature. | | | | | | | | | No meridional plasma flow in the heliosheath transition region | After holding a steady course for 25-years, the veteran space probe Voyager 1 has changed tack — by periodic rotation through 70º — to reposition its ion charged particle detectors to test theoretical predictions. And the results suggest that Voyager is not as close to leaving the Solar System as was thought. | | | | | | | | | Highly stretchable and tough hydrogels | A tough new hydrogel that can be stretched to 20 times its original length could make these materials much more useful in medicine and other applications. Currently available hydrogels can be found in flexible contact lenses, as scaffolds for tissue engineering and in drug delivery systems, where mechanical strength is not important. | | | | | | | | | | | | | | | The new NanoZoomer-XR redefines the art of whole-slide imaging with hassle-free, error-free, and blur-free scanning. This high-throughput scanner quickly and automatically scans up to 320 slides. It is extremely easy to use, and offers accurate, error-free scanning and automatic quality checking. These features, coupled with an outstanding optics system and real-time dynamic focus, result in images of top tier quality and clarity. | | | | | | | | | | | | | | | In this week's podcast: the latest findings from the ENCODE project, dinosaur hunting in China, and a step towards the quantum internet. In an ENCODE-related video Voices of ENCODE, ENCODE's lead coordinator, Ewan Birney, and Nature editor Magdalena Skipper talk about the challenges of managing a colossal genetics project and what we've learnt about the human genome. | | | | | | |
| | | | | | | | | | | | | | | | | Accountable and transparent ▶ | | | The US government has changed how biomedical scientists disclose their financial interests. The revised rules are welcome, but Internet access to the identified conflicts should be a requirement. | | | | | | | | | | | Moonlight drive ▶ | | | The data from the ageing Voyager probes are illuminating the edge of the Solar System. | | | | | | | | | | | We must be open about our mistakes ▶ | | | Greater transparency about the scientific process and a closer focus on correcting defective data are the way forward, says Jim Woodgett. | | | | | | | | | | | Seven days: 31 August–6 September 2012 ▶ | | | The week in science: arXiv finds fresh funding; hantavirus outbreak surprises experts; and Australia says it will join Europe's emissions trading system. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ENCODE: The human encyclopaedia ▶ | | | First they sequenced it. Now they have surveyed its hinterlands. But no one knows how much more information the human genome holds, or when to stop looking for it. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Q&A: Maths demystifier ▶ | | | Mathematician Glen Whitney left a job in finance to set up the Museum of Mathematics (MoMath), which is due to open in Manhattan, New York, on 15 December. He wants to spread the word that mathematics is a beautiful discipline and all around us, from the geometry of soap bubbles to the algorithms that control traffic lights. | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | | | | nature.com webcasts Macmillan Science Communication, Exclusive partner of Nature Publishing Group, Publisher of Nature and Scientific American presents a custom webcast on: The Power of Flow Cytometry in Microbiology Applications Date: September 27th 2012 Time: 1 pm Eastern / 10 a.m. Pacific 6 p.m. GMT / 7 p.m. CET Register for FREE: www.nature.com/webcasts Sponsored by: BD Biosciences | | | | | | | | |
| | | | | | | | | | | | | | | | The long-range interaction landscape of gene promoters OPEN ▶ | | | Amartya Sanyal, Bryan R. Lajoie, Gaurav Jain & Job Dekker | | | Chromosome conformation capture carbon copy (5C) is used to look at the relationships between functional elements and distal target genes in 1% of the human genome in three dimensions; the study describes numerous long-range interactions between promoters and distal sites that include elements resembling enhancers, promoters and CTCF-bound sites, their genomic distribution and complex interactions. | | | | | | | | A transcriptomic hourglass in plant embryogenesis ▶ | | | Marcel Quint, Hajk-Georg Drost, Alexander Gabel, Kristian Karsten Ullrich, Markus Bönn et al. | | | As it develops from a single-celled zygote to a mature plant embryo, the thale cress Arabidopsis thaliana passes through a stage during which phylogenetically very ancient genes are preferentially expressed, showing that animals and plants have independently acquired the developmental hourglass as a similar way of managing gene expression as they pass through embryogenesis, even though their morphological development is very different. | | | | | | | | Distinct contribution of stem and progenitor cells to epidermal maintenance ▶ | | | Guilhem Mascré, Sophie Dekoninck, Benjamin Drogat, Khalil Kass Youssef, Sylvain Brohée et al. | | | Whether a single group of stem cells or multiple populations contribute to the homeostasis of the interfollicular epidermis is controversial; here the authors use lineage tracing and mathematical modelling to show that the progenitors that maintain mouse epidermis are underpinned by slow-cycling stem cells that become mobilised on injury. | | | | | | | | Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae ▶ | | | Mohan Babu, James Vlasblom, Shuye Pu, Xinghua Guo, Chris Graham et al. | | | A survey of 1,590 putative integral, peripheral and lipid-anchored membrane proteins from Saccharomyces cerevisiae reveals unexpected physical associations underlying the membrane biology of eukaryotes and delineates the global topological landscape of the membrane interactome. | | | | | | | | | | | | | | Nonlinear dendritic processing determines angular tuning of barrel cortex neurons in vivo ▶ | | | Maria Lavzin, Sophia Rapoport, Alon Polsky, Liora Garion & Jackie Schiller | | | In vivo whole-cell recordings combined with an intracellular N-methyl-d-aspartate receptor (NMDAR) blocker and membrane hyperpolarization are used to examine the contribution of dendritic NMDAR-dependent regenerative responses to the angular tuning of layer 4 neurons; the results show that active dendritic processing sharpens the sensory responses of cortical neurons in vivo. | | | | | | | | | | | An integrated encyclopedia of DNA elements in the human genome OPEN ▶ | | | The ENCODE Project Consortium | | | This overview of the ENCODE project outlines the data accumulated so far, revealing that 80% of the human genome now has at least one biochemical function assigned to it; the newly identified functional elements should aid the interpretation of results of genome-wide association studies, as many correspond to sites of association with human disease. | | | | | | | | The accessible chromatin landscape of the human genome OPEN ▶ | | | Robert E. Thurman, Eric Rynes, Richard Humbert, Jeff Vierstra, Matthew T. Maurano et al. | | | An extensive map of human DNase I hypersensitive sites, markers of regulatory DNA, in 125 diverse cell and tissue types is described; integration of this information with other ENCODE-generated data sets identifies new relationships between chromatin accessibility, transcription, DNA methylation and regulatory factor occupancy patterns. | | | | | | | | | | | Architecture of the human regulatory network derived from ENCODE data OPEN ▶ | | | Mark B. Gerstein, Anshul Kundaje, Manoj Hariharan, Stephen G. Landt, Koon-Kiu Yan et al. | | | A description is given of the ENCODE consortium’s efforts to examine the principles of human transcriptional regulatory networks; the results are integrated with other genomic information to form a hierarchical meta-network where different levels have distinct properties. | | | | | | | | Landscape of transcription in human cells OPEN ▶ | | | Sarah Djebali, Carrie A. Davis, Angelika Merkel, Alex Dobin, Timo Lassmann et al. | | | A description is given of the ENCODE effort to provide a complete catalogue of primary and processed RNAs found either in specific subcellular compartments or throughout the cell, revealing that three-quarters of the human genome can be transcribed, and providing a wealth of information on the range and levels of expression, localization, processing fates and modifications of known and previously unannotated RNAs. | | | | | | | | Structure of a RING E3 ligase and ubiquitin-loaded E2 primed for catalysis ▶ | | | Anna Plechanovová, Ellis G. Jaffray, Michael H. Tatham, James H. Naismith & Ronald T. Hay | | | This study presents the crystal structure of a RING-type E3 ligase bound to ubiquitin-loaded E2; the structure reveals how ubiquitin binding to E2 leads to changes in the catalytic site, priming it for catalysis by the E3 enzyme. | | | | | | | | Highly stretchable and tough hydrogels ▶ | | | Jeong-Yun Sun, Xuanhe Zhao, Widusha R. K. Illeperuma, Ovijit Chaudhuri, Kyu Hwan Oh et al. | | | Hydrogels with improved mechanical properties, made by combining polymer networks with ionic and covalent crosslinks, should expand the scope of applications, and may serve as model systems to explore mechanisms of deformation and energy dissipation. | | | | | | | | Dopamine neurons modulate pheromone responses in Drosophila courtship learning ▶ | | | Krystyna Keleman, Eleftheria Vrontou, Sebastian Krüttner, Jai Y. Yu, Amina Kurtovic-Kozaric et al. | | | Young male fruitflies learn to avoid futile courtship of non-virgin females because the latter are scented with the male pheromone cis-vaccenyl acetate; this behaviour results from an increase in the males’ innate sensitivity for the pheromone and is controlled by a small set of dopaminergic neurons. | | | | | | | | | | | | | | Endogenous antigen tunes the responsiveness of naive B cells but not T cells ▶ | | | Julie Zikherman, Ramya Parameswaran & Arthur Weiss | | | Mature B cells encounter antigens during development that induce anergy or functional unresponsiveness; this large reservoir of dormant autoreactive B cells may serve as a pool of extended antibody specificity for purposes of protective immunity, as well as the source of pathogenic autoantibodies that characterize rheumatic diseases such as systemic lupus erythematosus. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
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| | | | | | | | | | | | | | | | Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae ▶ | | | Mohan Babu, James Vlasblom, Shuye Pu, Xinghua Guo, Chris Graham et al. | | | A survey of 1,590 putative integral, peripheral and lipid-anchored membrane proteins from Saccharomyces cerevisiae reveals unexpected physical associations underlying the membrane biology of eukaryotes and delineates the global topological landscape of the membrane interactome. | | | | | | | | | | | | | | | | | Structure of a RING E3 ligase and ubiquitin-loaded E2 primed for catalysis ▶ | | | Anna Plechanovová, Ellis G. Jaffray, Michael H. Tatham, James H. Naismith & Ronald T. Hay | | | This study presents the crystal structure of a RING-type E3 ligase bound to ubiquitin-loaded E2; the structure reveals how ubiquitin binding to E2 leads to changes in the catalytic site, priming it for catalysis by the E3 enzyme. | | | | | | | | Highly stretchable and tough hydrogels ▶ | | | Jeong-Yun Sun, Xuanhe Zhao, Widusha R. K. Illeperuma, Ovijit Chaudhuri, Kyu Hwan Oh et al. | | | Hydrogels with improved mechanical properties, made by combining polymer networks with ionic and covalent crosslinks, should expand the scope of applications, and may serve as model systems to explore mechanisms of deformation and energy dissipation. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Observations of increased tropical rainfall preceded by air passage over forests ▶ | | | D. V. Spracklen, S. R. Arnold & C. M. Taylor | | | Remote sensing and simulated atmospheric transport patterns are used to show that air passage over tropical forests produces about twice as much rain as passage over sparse vegetation; in an idealized Amazonian deforestation scenario, a reduction in seasonal precipitation of approximately 12–21% is estimated. | | | | | | | | Quantum teleportation over 143 kilometres using active feed-forward ▶ | | | Xiao-Song Ma, Thomas Herbst, Thomas Scheidl, Daqing Wang, Sebastian Kropatschek et al. | | | The benchmark for a global quantum internet — quantum teleportation of independent qubits using active feed-forward over a free-space link whose attenuation corresponds to the path between a satellite and a ground station — has now been successfully achieved over a distance of 143 km, between the Canary Islands of La Palma and Tenerife. | | | | | | | | | | | | | | No meridional plasma flow in the heliosheath transition region ▶ | | | Robert B. Decker, Stamatios M. Krimigis, Edmond C. Roelof & Matthew E. Hill | | | The radially outward flow of plasma from the Sun is expected to be deflected when it meets the flow of interstellar plasma through which the Solar System moves, but the spacecraft Voyager 1 unexpectedly finds that the deflected, meridional, flow is consistent with zero within the transition region. | | | | | | | | | | | Highly stretchable and tough hydrogels ▶ | | | Jeong-Yun Sun, Xuanhe Zhao, Widusha R. K. Illeperuma, Ovijit Chaudhuri, Kyu Hwan Oh et al. | | | Hydrogels with improved mechanical properties, made by combining polymer networks with ionic and covalent crosslinks, should expand the scope of applications, and may serve as model systems to explore mechanisms of deformation and energy dissipation. | | | | | | | | | | | Recent Antarctic Peninsula warming relative to Holocene climate and ice-shelf history ▶ | | | Robert Mulvaney, Nerilie J. Abram, Richard C. A. Hindmarsh, Carol Arrowsmith, Louise Fleet et al. | | | An ice-core record from the northeastern Antarctic Peninsula shows that the present warming period in the region is unusual in the context of natural climate variability over the past two thousand years, and that continued warming could cause ice-shelf instability farther south along the peninsula. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Observations of increased tropical rainfall preceded by air passage over forests ▶ | | | D. V. Spracklen, S. R. Arnold & C. M. Taylor | | | Remote sensing and simulated atmospheric transport patterns are used to show that air passage over tropical forests produces about twice as much rain as passage over sparse vegetation; in an idealized Amazonian deforestation scenario, a reduction in seasonal precipitation of approximately 12–21% is estimated. | | | | | | | | Ploughing the deep sea floor ▶ | | | Pere Puig, Miquel Canals, Joan B. Company, Jacobo Martín, David Amblas et al. | | | Bottom trawling is a fishing technique whereby heavy nets and gear scrape along the sea bed, and is shown here to disturb sediment fluxes and modify the sea floor morphology over large spatial scales. | | | | | | | | | | | | | | Recent Antarctic Peninsula warming relative to Holocene climate and ice-shelf history ▶ | | | Robert Mulvaney, Nerilie J. Abram, Richard C. A. Hindmarsh, Carol Arrowsmith, Louise Fleet et al. | | | An ice-core record from the northeastern Antarctic Peninsula shows that the present warming period in the region is unusual in the context of natural climate variability over the past two thousand years, and that continued warming could cause ice-shelf instability farther south along the peninsula. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | | | | The Naturejobs Career Expo London 2012 UK's largest career fair and conference focused exclusively on the scientific world. 20 September 2012 - Business Design Centre, London, UK Register today! Career fair is FREE of charge. Conference fee is £40. Conference keynote speaker: Jorge Cham | | | | | | | | |
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| | | | | | | | | | | | | | | Investment increases ▶ | | | Growth in research spending among European businesses could prompt recruitment in developing nations. | | | | | | | | | | | Teachers lack resources ▶ | | | Restrictions among non-tenure-track faculty members impair students' educational experience. | | | | | | | | | | | Advice for protégés ▶ | | | Novice entrepreneurs build business skills best when they trust their mentors. | | | | | | | | | | | Careers related news & comment | | | | | | | | | | | | |
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