The ISME Journal - Table of Contents alert Volume 6 Issue 9

TABLE OF CONTENTS Volume 6, Issue 9 (September 2012) In this issue Commentary Original Articles Short Communication Also new AOP Sign up for e-alerts Recommend to your library Web feed Subscribe Advertisement Get your free copy of ISMEJ's Mini-Journal. Once again our co-editors-in-chief have selected 5 great articles that represent what The ISME Journal is all about; from populations in the rhizosphere to the diet-responsive bacteria in the human colon or even the lifestyle of marine sponges, it is all published in The ISME Journal. And that is exactly our aim, to be diverse and multidisciplinary and publish the best in the great field of Microbial Ecology. We hope you enjoy reading these articles as much as we have! DOWNLOAD THE FREE PDF NOW   Commentary Top Describing microbial communities and performing global comparisons in the ‘omic era Tom O Delmont, Pascal Simonet and Timothy M Vogel ISME J 2012 6: 1625-1628; advance online publication, June 21, 2012; 10.1038/ismej.2012.55 Full Text Original Articles Top MICROBIAL POPULATION AND COMMUNITY ECOLOGY Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils Byron C Crump, Linda A Amaral-Zettler and George W Kling ISME J 2012 6: 1629-1639; advance online publication, March 1, 2012; 10.1038/ismej.2012.9 Abstract | Full Text Distinct and diverse anaerobic bacterial communities in boreal lakes dominated by candidate division OD1 Sari Peura, Alexander Eiler, Stefan Bertilsson, Hannu Nykänen, Marja Tiirola and Roger I Jones ISME J 2012 6: 1640-1652; advance online publication, March 15, 2012; 10.1038/ismej.2012.21 Abstract | Full Text Stochastic and deterministic assembly processes in subsurface microbial communities James C Stegen, Xueju Lin, Allan E Konopka and James K Fredrickson ISME J 2012 6: 1653-1664; advance online publication, March 29, 2012; 10.1038/ismej.2012.22 Abstract | Full Text Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer Xueju Lin, James McKinley, Charles T Resch, Rachael Kaluzny, Christian L Lauber, James Fredrickson, Rob Knight and Allan Konopka ISME J 2012 6: 1665-1676; advance online publication, March 29, 2012; 10.1038/ismej.2012.26 Abstract | Full Text INTEGRATED GENOMICS AND POST-GENOMICS APPROACHES IN MICROBIAL ECOLOGY Structure, fluctuation and magnitude of a natural grassland soil metagenome Tom O Delmont, Emmanuel Prestat, Kevin P Keegan, Michael Faubladier, Patrick Robe, Ian M Clark, Eric Pelletier, Penny R Hirsch, Folker Meyer, Jack A Gilbert, Denis Le Paslier, Pascal Simonet and Timothy M Vogel ISME J 2012 6: 1677-1687; advance online publication, February 2, 2012; 10.1038/ismej.2011.197 Abstract | Full Text Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens Frank O Aylward, Kristin E Burnum, Jarrod J Scott, Garret Suen, Susannah G Tringe, Sandra M Adams, Kerrie W Barry, Carrie D Nicora, Paul D Piehowski, Samuel O Purvine, Gabriel J Starrett, Lynne A Goodwin, Richard D Smith, Mary S Lipton and Cameron R Currie ISME J 2012 6: 1688-1701; advance online publication, March 1, 2012; 10.1038/ismej.2012.10 Abstract | Full Text Metagenomic analysis of a stable trichloroethene-degrading microbial community Vanessa L Brisson, Kimberlee A West, Patrick KH Lee, Susannah G Tringe, Eoin L Brodie and Lisa Alvarez-Cohen ISME J 2012 6: 1702-1714; advance online publication, March 1, 2012; 10.1038/ismej.2012.15 Abstract | Full Text Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill Olivia U Mason, Terry C Hazen, Sharon Borglin, Patrick S G Chain, Eric A Dubinsky, Julian L Fortney, James Han, Hoi-Ying N Holman, Jenni Hultman, Regina Lamendella, Rachel Mackelprang, Stephanie Malfatti, Lauren M Tom, Susannah G Tringe, Tanja Woyke, Jizhong Zhou, Edward M Rubin and Janet K Jansson ISME J 2012 6: 1715-1727; advance online publication, June 21, 2012; 10.1038/ismej.2012.59 Abstract | Full Text GEOMICROBIOLOGY AND MICROBIAL CONTRIBUTIONS TO GEOCHEMICAL CYCLES Molecular evidence of iron limitation and availability in the global diazotroph Trichodesmium Phoebe Dreux Chappell, James W Moffett, Annette M Hynes and Eric A Webb ISME J 2012 6: 1728-1739; advance online publication, March 8, 2012; 10.1038/ismej.2012.13 Abstract | Full Text Resource quality affects carbon cycling in deep-sea sediments Daniel J Mayor, Barry Thornton, Steve Hay, Alain F Zuur, Graeme W Nicol, Jenna M McWilliam and Ursula F M Witte ISME J 2012 6: 1740-1748; advance online publication, March 1, 2012; 10.1038/ismej.2012.14 Abstract | Full Text MICROBIAL ECOLOGY AND FUNCTIONAL DIVERSITY OF NATURAL HABITATS Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions Thomas Schneider, Katharina M Keiblinger, Emanuel Schmid, Katja Sterflinger-Gleixner, Günther Ellersdorfer, Bernd Roschitzki, Andreas Richter, Leo Eberl, Sophie Zechmeister-Boltenstern and Kathrin Riedel ISME J 2012 6: 1749-1762; advance online publication, March 8, 2012; 10.1038/ismej.2012.11 Abstract | Full Text Plant litter and soil type drive abundance, activity and community structure of alkB harbouring microbes in different soil compartments Stephan Schulz, Julia Giebler, Antonis Chatzinotas, Lukas Y Wick, Ingo Fetzer, Gerhard Welzl, Hauke Harms and Michael Schloter ISME J 2012 6: 1763-1774; advance online publication, March 8, 2012; 10.1038/ismej.2012.17 Abstract | Full Text Changes in coral microbial communities in response to a natural pH gradient Dalit Meron, Riccardo Rodolfo-Metalpa, Ross Cunning, Andrew C Baker, Maoz Fine and Ehud Banin ISME J 2012 6: 1775-1785; advance online publication, March 22, 2012; 10.1038/ismej.2012.19 Abstract | Full Text Vertical segregation and phylogenetic characterization of ammonia-oxidizing Archaea in a deep oligotrophic lake Jean-Christophe Auguet, Xavier Triadó-Margarit, Natalya Nomokonova, Lluís Camarero and Emilio O Casamayor ISME J 2012 6: 1786-1797; advance online publication, April 12, 2012; 10.1038/ismej.2012.33 Abstract | Full Text Short Communication Top GEOMICROBIOLOGY AND MICROBIAL CONTRIBUTIONS TO GEOCHEMICAL CYCLES Evidence for the direct oxidation of organic nitrogen to N2 gas in the Arabian Sea Mark Trimmer and Kevin J Purdy ISME J 2012 6: 1798-1800; advance online publication, March 8, 2012; 10.1038/ismej.2012.18 Abstract | Full Text Advertisement Follow ISME & ISMEJ on Facebook for access to news, comments and articles make it a place to share information with others interested in the field.   Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. The contents of the Natureevents Directory are now live. The digital version is available here. Find the latest scientific conferences, courses, meetings and symposia on natureevents.com. For event advertising opportunities across the Nature Publishing Group portfolio please contact natureevents@nature.com More Nature Events Please note that you need to be a subscriber or site-licence holder to enjoy full-text access to The ISME Journal. In order to do so, please purchase a subscription. You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/nams/svc/myaccount (You will need to log in to be recognised as a nature.com registrant). For further technical assistance, please contact our registration department. For print subscription enquiries, please contact our subscription department. For other enquiries, please contact our customer feedback department. Nature Publishing Group | 75 Varick Street, 9th Floor | New York | NY 10013-1917 | USA Nature Publishing Group's worldwide offices: London - Paris - Munich - New Delhi - Tokyo - Melbourne San Diego - San Francisco - Washington - New York - Boston Macmillan Publishers Limited is a company incorporated in England and Wales under company number 785998 and whose registered office is located at Brunel Road, Houndmills, Basingstoke, Hampshire RG21 6XS. © 2012 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.