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| | | Volume 488 Number 7413 | | | nature | | The science that matters. Every week. |
| | | | | | | | | | | | | A-IMBN Research - Research highlights from the Asia-Pacific International Molecular Biology Network Recent highlights: Clues to crustacean hormone production | Programmed for intelligence | Building the pigments for light sensing | Colon cancer culprit found Register today for biweekly email alerts and never miss the latest in molecular biology research in Asia. | |
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| | | | | | Specials - Outlook: Human papillomavirus |
| | | It is tempting to characterize the human papillomavirus (HPV) story as a triumph of science. It might have taken 30 years from identification of HPV as the cause of cervical cancer to the first vaccine reaching the market, but there is still much to understand about HPV biology and an urgent need to improve on existing vaccines and diagnostic tests. The story of HPV is still being written. ▼ more | |
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| | | | | X-ray and optical wave mixing | Mixing X-rays and optical waves was proposed as an atomic-scale probe of optical interactions nearly 50 years ago, but has been difficult to achieve due to a lack of sufficiently strong X-ray sources. Now, with the advent of free electron lasers, a team working with the Linac Coherent Light Source, has achieved X-ray and optical mixing in diamond. The new capability should make it possible to observe light's interactions with matter at the atomic scale and enable direct visualization of the making and breaking of chemical bonds. | |
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| | | | | An index to assess the health and benefits of the global ocean | Global ocean policy strives for 'healthy oceans', but we have no tool to actually measure ocean health. To fill this gap Benjamin Halpern and colleagues have developed an ocean health index to assess the many factors that contribute to the state of the oceans. Scores were determined for all coastal nations, and the global score is 60 out of 100. Many African and Asian countries score poorly. This new index should allow for quick identification of strategic actions to improve overall ocean health to the benefit of Earth's ecosystems and their ability to provide benefits to society. | |
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| | | | | | | | | | Nature Insight: Chemistry and Energy This Insight focuses on the developments in solar energy, water-based methods of electricity generation and the production of biofuels. Access the Insight free online for two months. Produced with support from: TOTAL | |
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| | | | | | | Antibiotics in early life alter the murine colonic microbiome and adiposity | Continuous treatment with low levels of antibiotics has been used to enhance body weight in livestock for decades, yet the mechanisms for this effect are unclear. Using a similar approach in young mice it is now shown that subtherapeutic doses of antibiotics increase the body's fat mass, cause changes in the composition of the intestinal microbial community and modify microbial metabolic pathways, leading to short-chain fatty acid production. These findings highlight the role of microbes in maintaining normal metabolic activity. | |
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| | | | | | In this week's podcast: horses with unusual walks, dieting monkeys, and anti-science violence in Mexico. | |
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| | | | | | | | | | | | | | | | | | | Open for business ▶ | | | If Europe is to achieve the science-investment goals it set for the decade, it must make life easier for researchers coming from abroad. | | |
| | | | | Small steps ▶ | | | Violent opposition to nanotechnology should be countered with public awareness. | | |
| | | | | | | | | | | | | | Seven days: 24–30 August 2012 ▶ | | | The week in science: Eulogies for Neil Armstrong; more disappointing trial results for Alzheimer's drugs; and China's plans for telescopes in the Antarctic. | | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Nanotechnology: Armed resistance ▶ | | | Nature assesses the aftermath of a series of nanotechnology-lab bombings in Mexico — and asks how the country became a target of eco-anarchists. | | |
| | | | | | | | | | | | | | | | | | | | | | | | | | Q&A: Species futurologist ▶ | | | Media artist Jon McCormack uses computer algorithms to imagine the future of native Australian species. As he prepares two new works — Codeform and Fifty Sisters — for the Ars Electronica Festival in Linz, Austria, he talks about digital evolution and virtual ecosystems. | | |
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| | | | | | | | | | | | | | | | | | | | | | | | | | | | Impact of caloric restriction on health and survival in rhesus monkeys from the NIA study ▶ | | | Julie A. Mattison, George S. Roth, T. Mark Beasley, Edward M. Tilmont, April M. Handy et al. | | | The results of a 23-year study of caloric restriction in rhesus macaques are reported; restricted caloric intake did not increase survival, but improved the metabolic profile of monkeys started at older ages and showed a trend towards delaying age-associated disease in monkeys started at a young age. | | |
| | | | | RPN-6 determines C. elegans longevity under proteotoxic stress conditions ▶ | | | David Vilchez, Ianessa Morantte, Zheng Liu, Peter M. Douglas, Carsten Merkwirth et al. | | | This study shows that nematodes without a germ line re-allocate resources to the soma, resulting in elevated proteasome activity, clearance of damaged proteins and increased longevity; this activity is associated with the increased expression of rpn-6 mediated by the transcription factor DAF-16. | | |
| | | | | Activity in motor–sensory projections reveals distributed coding in somatosensation ▶ | | | Leopoldo Petreanu, Diego A. Gutnisky, Daniel Huber, Ning-long Xu, Dan H. O’Connor et al. | | | Imaging of activity in long-range axons is reported in mice performing tactile object-localization with their whiskers; the feedback projection from the motor cortex to the somatosensory cortex provides information to integrate whisker movement information and touch, which are key components of object identification. | | |
| | | | | | | | Structure of the haptoglobin–haemoglobin complex ▶ | | | Christian Brix Folsted Andersen, Morten Torvund-Jensen, Marianne Jensby Nielsen, Cristiano Luis Pinto de Oliveira, Hans-Petter Hersleth et al. | | | This study reports the crystal structure of porcine haptoglobin in complex with haemoglobin at 2.9 Å resolution; this provides a structural basis of haptoglobin-mediated recognition of haemoglobin, and insight into the protective role of haptoglobin at the atomic level. | | |
| | | | | Paramutation in Drosophila linked to emergence of a piRNA-producing locus ▶ | | | Augustin de Vanssay, Anne-Laure Bougé, Antoine Boivin, Catherine Hermant, Laure Teysset et al. | | | A paramutation occurs between two alleles in the same locus, when one allele induces a heritable mutation in another allele without modifying the DNA sequence; now, in Drosophila, a paramutation is shown to be transmissible over generations. | | |
| | | | | | | | Antibiotics in early life alter the murine colonic microbiome and adiposity ▶ | | | Ilseung Cho, Shingo Yamanishi, Laura Cox, Barbara A. Methé, Jiri Zavadil et al. | | | Treatment of young mice with low levels of antibiotics results in increases in adiposity and causes both a change in the composition of the intestinal microbial community and an alteration in the activity of microbial metabolic pathways, leading to increased short-chain fatty acid production. | | |
| | | | | Potential methane reservoirs beneath Antarctica ▶ | | | J. L. Wadham, S. Arndt, S. Tulaczyk, M. Stibal, M. Tranter et al. | | | On the basis of data from other subglacial environments and simulations of the accumulation of methane hydrate in Antarctic sedimentary basins, it seems there could be unsuspected, large stores of methane beneath the Antarctic Ice Sheet. | | |
| | | | | Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice OPEN ▶ | | | Lisa S. Andersson, Martin Larhammar, Fatima Memic, Hanna Wootz, Doreen Schwochow et al. | | | A premature stop codon in the DMRT3 gene has a major effect on the pattern of locomotion in horses, and the Dmrt3 transcription factor is critical in the development of a coordinated locomotor network in mice, suggesting that it has an important role in configuring the spinal circuits that control stride. | | |
| | | | | Autistic-like behaviour and cerebellar dysfunction in Purkinje cell Tsc1 mutant mice ▶ | | | Peter T. Tsai, Court Hull, YunXiang Chu, Emily Greene-Colozzi, Abbey R. Sadowski et al. | | | Both heterozygous loss and homozygous loss of Tsc1 in mouse cerebellar Purkinje cells (PCs) result in autistic-like behaviours, which can be prevented by treatment with the mTOR inhibitor, rapamycin; these findings demonstrate critical roles for PCs in autistic-like behaviours in mice. | | |
| | | | | | | | IDH1(R132H) mutation increases murine haematopoietic progenitors and alters epigenetics ▶ | | | Masato Sasaki, Christiane B. Knobbe, Joshua C. Munger, Evan F. Lind, Dirk Brenner et al. | | | Mutations in isocitrate dehydrogenases IDH1 and IDH2 are common in human gliomas and acute myeloid leukaemias; here, mice that carry the IDH1(R132H) mutation are described, in a new model that should help in investigating the links between mutant IDH1 and leukaemia. | | |
| | | | | Recurrent R-spondin fusions in colon cancer OPEN ▶ | | | Somasekar Seshagiri, Eric W. Stawiski, Steffen Durinck, Zora Modrusan, Elaine E. Storm et al. | | | Exomes, transcriptomes and copy-number alterations in a sample of more than 70 primary human colonic tumours were analysed in an attempt to characterize the genomic landscape; in addition to finding alterations in genes associated with commonly mutated signalling pathways, recurrent gene fusions involving R-spondin family members were also found to occur in approximately 10% of colonic tumours, revealing a potential new therapeutic target. | | |
| | | | | Tumour suppressor RNF43 is a stem-cell E3 ligase that induces endocytosis of Wnt receptors ▶ | | | Bon-Kyoung Koo, Maureen Spit, Ingrid Jordens, Teck Y. Low, Daniel E. Stange et al. | | | In vivo and in vitro studies show that the stem-cell E3 ubiquitin ligases RNF43 and ZNRF3 act as tumour suppressors in colorectal cancer models, and are involved in the negative regulation of the cancer-associated Wnt signalling pathway through limiting the cell-surface expression of Wnt receptors. | | |
| | | | | Novel role of PKR in inflammasome activation and HMGB1 release ▶ | | | Ben Lu, Takahisa Nakamura, Karen Inouye, Jianhua Li, Yiting Tang et al. | | | Double-stranded RNA-dependent protein kinase (PKR) is shown to be a key regulator of the inflammasome; PKR is central for caspase-1 activation and the release of interleukin (IL)-1β, IL-18 and high-mobility group box 1 (HMGB1) in response to a diverse range of stimuli. | | |
| | | | | T cells become licensed in the lung to enter the central nervous system ▶ | | | Francesca Odoardi, Christopher Sie, Kristina Streyl, Vijay K. Ulaganathan, Christian Schläger et al. | | | A Lewis rat model of experimental autoimmune encephalomyelitis is used to show that on their way to the CNS, encephalitogenic T-cell blasts are temporarily resident in the lung, where they reprogram their gene-expression profile and functional properties to enable them to transgress the blood–brain barrier into the CNS. | | |
| | | | | | | | | | | | | | | | | | | | | | | Brief Communications Arising | | | | | |
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| | | | | | | | | Nature Special: Human Microbiota The human body is colonized by a vast number of microbes, collectively referred to as the human microbiota. The link between these microbes and our health is the focus of a growing number of research initiatives and new insights are emerging rapidly. Access selected content free online for six months.
Produced with support from: MO BIO Laboratories | |
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| | | | | | | | | | | | | | | | | | Structure of the haptoglobin–haemoglobin complex ▶ | | | Christian Brix Folsted Andersen, Morten Torvund-Jensen, Marianne Jensby Nielsen, Cristiano Luis Pinto de Oliveira, Hans-Petter Hersleth et al. | | | This study reports the crystal structure of porcine haptoglobin in complex with haemoglobin at 2.9 Å resolution; this provides a structural basis of haptoglobin-mediated recognition of haemoglobin, and insight into the protective role of haptoglobin at the atomic level. | | |
| | | | | Brief Communications Arising | | | | | |
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| | | | | | | | | | | | | | | | | | | | | | | | X-ray and optical wave mixing ▶ | | | T. E. Glover, D. M. Fritz, M. Cammarata, T. K. Allison, Sinisa Coh et al. | | | A free-electron laser provides a sufficiently intense source of X-rays to allow X-ray and optical wave mixing, here demonstrated by measuring the induced charge density and associated microscopic fields in single-crystal diamond. | | |
| | | | | A Cenozoic record of the equatorial Pacific carbonate compensation depth ▶ | | | Heiko Pälike, Mitchell W. Lyle, Hiroshi Nishi, Isabella Raffi, Andy Ridgwell et al. | | | A detailed reconstruction of the calcium carbonate compensation depth—at which calcium carbonate is dissolved—in the equatorial Pacific Ocean over the past 53 million years shows that it tracks ocean cooling, increasing as the ocean cools. | | |
| | | | | Potential methane reservoirs beneath Antarctica ▶ | | | J. L. Wadham, S. Arndt, S. Tulaczyk, M. Stibal, M. Tranter et al. | | | On the basis of data from other subglacial environments and simulations of the accumulation of methane hydrate in Antarctic sedimentary basins, it seems there could be unsuspected, large stores of methane beneath the Antarctic Ice Sheet. | | |
| | | | | ‘Melt welt’ mechanism of extreme weakening of gabbro at seismic slip rates ▶ | | | Kevin M. Brown & Yuri Fialko | | | A laboratory study of the frictional properties of the igneous rock gabbro at seismically relevant slip rates suggests that the initial weakening of a fault surface during earthquake rupture may be associated with hotspots and macroscopic streaks of melt, which partially unload the rest of the slip interface. | | |
| | | | | Graphene and boron nitride lateral heterostructures for atomically thin circuitry ▶ | | | Mark P. Levendorf, Cheol-Joo Kim, Lola Brown, Pinshane Y.Huang et al. | | | This versatile and scalable 'patterned regrowth' fabrication process produces one-atom-thick sheets containing lateral junctions between electrically conductive graphene and insulating hexagonal boron nitride, paving the way for flexible, transparent electronic device films. | | |
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| | | | | | | | | | | | | | | | | | | | | Closing yield gaps through nutrient and water management ▶ | | | Nathaniel D. Mueller, James S. Gerber, Matt Johnston, Deepak K. Ray, Navin Ramankutty et al. | | | Global yields of major crops are analysed using climate, irrigation and new nutrient data to show that large production increases are possible from closing yield gaps to 100% of attainable yields, and that changes in management practices needed to close yield gaps vary considerably by region and current intensity. | | |
| | | | | | | | A Cenozoic record of the equatorial Pacific carbonate compensation depth ▶ | | | Heiko Pälike, Mitchell W. Lyle, Hiroshi Nishi, Isabella Raffi, Andy Ridgwell et al. | | | A detailed reconstruction of the calcium carbonate compensation depth—at which calcium carbonate is dissolved—in the equatorial Pacific Ocean over the past 53 million years shows that it tracks ocean cooling, increasing as the ocean cools. | | |
| | | | | An index to assess the health and benefits of the global ocean ▶ | | | Benjamin S. Halpern, Catherine Longo, Darren Hardy, Karen L. McLeod, Jameal F. Samhouri et al. | | | This study develops a wide-ranging index to assess the many factors that contribute to the health and benefits of the oceans, and the scores for all costal nations are assessed. | | |
| | | | | Potential methane reservoirs beneath Antarctica ▶ | | | J. L. Wadham, S. Arndt, S. Tulaczyk, M. Stibal, M. Tranter et al. | | | On the basis of data from other subglacial environments and simulations of the accumulation of methane hydrate in Antarctic sedimentary basins, it seems there could be unsuspected, large stores of methane beneath the Antarctic Ice Sheet. | | |
| | | | | ‘Melt welt’ mechanism of extreme weakening of gabbro at seismic slip rates ▶ | | | Kevin M. Brown & Yuri Fialko | | | A laboratory study of the frictional properties of the igneous rock gabbro at seismically relevant slip rates suggests that the initial weakening of a fault surface during earthquake rupture may be associated with hotspots and macroscopic streaks of melt, which partially unload the rest of the slip interface. | | |
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| | | | | | | | | | | | | | | HPV: The global burden ▶ | | | Human papillomavirus (HPV) has become synonymous with cervical cancer, but its actual footprint is much bigger, by James Mitchell Crow. | | |
| | | | | | | | Vaccination: A durable design ▶ | | | Vaccines on the market aren't practical for the developing world — where cervical cancer hits hardest — but researchers are trying to make ones that are. | | |
| | | | | Screening: Testing times ▶ | | | Pap tests have been a mainstay of cervical cancer screening, but new tests, vaccines and knowledge might be changing that, including when and how frequently to test. | | |
| | | | | Perspective: Vaccinate boys too ▶ | | | HPV-associated cancers in men are on the rise. By not vaccinating boys we are failing to gain maximum health benefit, argues Margaret Stanley. | | |
| | | | | Public health: Prevention comes of age ▶ | | | Sub-Saharan countries lag behind in screening and treatment for human papillomavirus. But national efforts and the introduction of low-tech methods could change that. | | |
| | | | | Pathology: Three questions ▶ | | | Linking specific types of HPV with cervical cancer and developing effective vaccines against should be celebrated. But there are gaps in our understanding of these viruses and how they cause disease. | | |
| | | | | Q&A: On the case ▶ | | | A Nobel prizewinner for pinning cervical cancer on human papillomavirus, Harald zur Hausen still investigates viruses. Nature Outlook talks to the medical doctor–turned–virologist about other possible culprits. | | |
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| | | | | | | | | | For the 5th year running, Nature will be sponsoring the 'Scientific Merit' and 'Audience' awards at the Imagine Science Film Festival (ISFF). For information, or to submit your film and compete for the $2,500 Nature Scientific Merit Award and the $1,000 Nature Audience Award visit imaginesciencefilms.org/festival/submit-your-film/ | |
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| | | | | | | | | | | | Job satisfaction: Turbulent times ▶ | | | Nature's 2012 Salary and Satisfaction Survey suggests that many scientists are content with their work, but uneasy about finances. | | |
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