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| | | | | | | | | | Superflares on solar-type stars | | The Kepler satellite, usually to be found searching for extrasolar planets, is also proving ideal for the study of 'superflares'. These explosive events in the atmospheres of stars are many thousands of times more energetic than the average solar flare. They can occur on Sun-like stars but luckily, this paper suggests that our Sun is extremely unlikely to produce a superflare. | | | | | | | | | | | | | | Peroxiredoxins are conserved markers of circadian rhythms | | 'Clock genes' have been studied in many organisms and their variety encourages the view that each clock evolved independently. But the recent discovery of circadian oscillations linked to the oxidation-reduction cycles of peroxiredoxin proteins in human red blood cells and algae suggests otherwise. This type of cellular time-keeping may have co-evolved with redox homeostatic mechanisms for 2.5 billion years. | | | | | | | | | | | | | | Discovery of a sensory organ that coordinates lunge feeding in rorqual whales | | Rorqual whales, a group that includes the largest vertebrates known, living or extinct, have evolved a method of feeding called lunge feeding, unique among vertebrates. This involves swimming at speed whilst gulping large volumes of prey-laden water. Now a new study reavels a unique sensory organ in the jaws of fin, minke and other roquals that plays a crucial role in coordinating lunge feeding. | | | | | | | | | | | | | | | | | | | | | | | | | | In this week's podcast: strict diets and stem cells, how the goliaths of the ocean trawl for food, and birds learning to hold a tune. Plus, the best of the rest from Nature. | | | | | | | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | A charter for geoengineering ▶ | | | | A controversial field trial of technology to mitigate climate change has been cancelled, but research continues. A robust governance framework is sorely needed to prevent further setbacks. | | | | | | | | | | | | In from the cold ▶ | | | | Research into the Fukushima meltdowns has given a new lease of life to a valuable group. | | | | | | | | | | | | A whale of a story ▶ | | | | A previously unknown sensory organ provides a lesson in coordination. | | | | | | | | | | | | | | | | | | | | | | | | Seven days: 18–24 May 2012 ▶ | | | | The week in science: Canada shuts down influential lakes research site; France's science minister appointed; and commercial spaceflight firm SpaceX launches its Dragon capsule to the International Space Station. | | | | | | | | | | | | | | | | Fukushima's doses tallied ▶ | | | | Studies indicate minimal health risks from radiation in the aftermath of Japan's nuclear disaster. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Gran Sasso: Chamber of physics ▶ | | | | The world's largest underground laboratory has been a success story for Italian science. But 30 years after construction began, its future is uncertain. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Q&A: The graphic historian ▶ | | | | New York-based author and illustrator Jonathan Fetter-Vorm makes hand-printed books on Darwin and other historical scientific subjects — including a hand-stitched treatise on surgical suturing. As he releases Trinity, a graphic history of the atomic bomb, Fetter-Vorm talks about crafting science chronicles. | | | | | | | | | | | | | | | | | | | | | | | | | | | |
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| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | The let-7–Imp axis regulates ageing of the Drosophila testis stem-cell niche ▶ | | | | Hila Toledano, Cecilia D’Alterio, Benjamin Czech, Erel Levine & D. Leanne Jones | | | | In the Drosophila testis, IGF-II messenger RNA binding protein (Imp) is shown to promote stem-cell niche maintenance by stabilizing unpaired (upd) RNA; Imp levels decrease in the hub cells of older males, owing to regulation by the microRNA let-7. | | | | | | | | | | | | | | | | Immune self-reactivity triggered by drug-modified HLA-peptide repertoire ▶ | | | | Patricia T. Illing, Julian P. Vivian, Nadine L. Dudek, Lyudmila Kostenko, Zhenjun Chen et al. | | | | The paper describes the mechanism by which small-molecule drugs such as abacavir affect antigen presentation and consequently T-cell response in immunologically based drug reactions such as abacavir hypersensitivity syndrome (AHS) and carbamazepine-induced Stevens–Johnson syndrome (SJS). | | | | | | | | | | | | | | | | | | | | Crystal structure of an orthologue of the NaChBac voltage-gated sodium channel ▶ | | | | Xu Zhang, Wenlin Ren, Paul DeCaen, Chuangye Yan, Xiao Tao et al. | | | | The crystal structure of NavRh, a NaChBac orthologue from the marine Rickettsiales sp. HIMB114, defines an ion binding site within the selectivity filter, and reveals several conformational rearrangements that may underlie the electromechanical coupling mechanism. | | | | | | | | | | | | Crystal structure of a voltage-gated sodium channel in two potentially inactivated states ▶ | | | | Jian Payandeh, Tamer M. Gamal El-Din, Todd Scheuer, Ning Zheng & William A. Catterall | | | | X-ray crystal structures of a bacterial voltage-gated sodium channel in two ‘inactivated’ conformations are reported, revealing several conformational rearrangements that may underlie the electromechanical coupling of voltage sensor movement to inactivation of the pore. | | | | | | | | | | | | Covert skill learning in a cortical-basal ganglia circuit ▶ | | | | Jonathan D. Charlesworth, Timothy L. Warren & Michael S. Brainard | | | | In Bengalese finches, a basal ganglia circuit, the anterior forebrain pathway, can covertly acquire the ability to adaptively modify song without contributing to song production during practice or training. | | | | | | | | | | | | Atomic model of the type III secretion system needle ▶ | | | | Antoine Loquet, Nikolaos G. Sgourakis, Rashmi Gupta, Karin Giller, Dietmar Riedel et al. | | | | The structure of the needle of the type III secretion system of Salmonella typhimurium, used to inject virulence proteins into host cells during infection, has been resolved by a combination of in vitro needle production, solid-state nuclear magnetic resonance, electron microscopy and Rosetta modelling at atomic resolution. | | | | | | | | | | | | The mutational landscape of lethal castration-resistant prostate cancer ▶ | | | | Catherine S. Grasso, Yi-Mi Wu, Dan R. Robinson, Xuhong Cao, Saravana M. Dhanasekaran et al. | | | | Exome sequencing is used to investigate the role of mutations and copy number aberrations in metastatic castration-resistant prostate cancer, revealing recurrent mutations in multiple chromatin/histone modifying genes, as well as genes involved in androgen signalling. | | | | | | | | | | | | Structure of yeast Argonaute with guide RNA ▶ | | | | Kotaro Nakanishi, David E. Weinberg, David P. Bartel & Dinshaw J. Patel | | | | Argonaute proteins are an essential part of the guide-RNA–protein complex that carries out RNA-induced gene silencing; structure–function studies of the yeast complex reveal conserved features of the eukaryotic complex, which underlie formation of the catalytically active conformation. | | | | | | | | | | | | | | | | Peroxiredoxins are conserved markers of circadian rhythms ▶ | | | | Rachel S. Edgar, Edward W. Green, Yuwei Zhao, Gerben van Ooijen, Maria Olmedo et al. | | | | Daily oxidation–reduction cycles of peroxiredoxin proteins are shown to be conserved in all domains of life, including Bacteria, Archaea and Eukaryota. | | | | | | | | | | | | Rab5 is necessary for the biogenesis of the endolysosomal system in vivo ▶ | | | | Anja Zeigerer, Jerome Gilleron, Roman L. Bogorad, Giovanni Marsico, Hidenori Nonaka et al. | | | | The small GTPase Rab5 has been proposed to be a master regulator of endosome biogenesis; using in vivo RNA interference and mathematical modelling it is shown here that the endolysosomal system is resilient to loss of Rab5 until its concentration drops below a critical level, at which point endosomes are lost, leading to increased serum low-density lipoprotein levels, alterations in metabolism and hepatocellular polarity. | | | | | | | | | | | | Brain-wide neuronal dynamics during motor adaptation in zebrafish ▶ | | | | Misha B. Ahrens, Jennifer M. Li, Michael B. Orger, Drew N. Robson, Alexander F. Schier et al. | | | | Neural activity is recorded at the cellular level, throughout the brain of larval zebrafish, while the animals interact with a virtual environment and adapt their motor output to changes in visual feedback; this is used to derive candidates of functional elements driving motor learning. | | | | | | | | | | | | | | | | | | | | Melanoma genome sequencing reveals frequent PREX2 mutations ▶ | | | | Michael F. Berger, Eran Hodis, Timothy P. Heffernan, Yonathan Lissanu Deribe, Michael S. Lawrence et al. | | | | Whole-genome sequencing of 25 metastatic melanomas and matched germline DNA in humans reveals that the highest mutation load is associated with chronic sun exposure, and that the PREX2 gene is mutated in approximately 14 per cent of cases | | | | | | | | | | | | Sustained translational repression by eIF2α-P mediates prion neurodegeneration ▶ | | | | Julie A. Moreno, Helois Radford, Diego Peretti, Joern R. Steinert, Nicholas Verity et al. | | | | Accumulation of prion protein during prion replication causes persistent translational repression of global protein synthesis, which is mediated by eIF2α-P and is associated with synaptic failure and neuronal loss in prion-diseased mice; promoting translational recovery in hippocampi of prion-infected mice is neuroprotective. | | | | | | | | | | | | | | | | | | | | | | | | The complex of tmRNA–SmpB and EF-G on translocating ribosomes ▶ | | | | David J. F. Ramrath, Hiroshi Yamamoto, Kristian Rother, Daniela Wittek, Markus Pech et al. | | | | Stalled bacterial ribosomes can be rescued by interaction with SmpB protein and a highly structured transfer-messenger RNA, and a cryo-electron microscopy map of this complex now shows how EF-G-dependent translocation of this non-canonical ligand is facilitated by conformational changes in the ribosome and the transfer-messenger RNA. | | | | | | | | | | | | Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis ▶ | | | | Micheline N. Ngaki, Gordon V. Louie, Ryan N. Philippe, Gerard Manning, Florence Pojer et al. | | | | The diffusion limited stereospecific enzyme chalcone isomerase represents the adaptive evolution of a catalytically perfected enzyme from non-catalytic, fatty-acid-binding proteins (FAPs) with contemporary roles in plant fatty-acid metabolism as evidenced by altered fatty acid content and marked reproductive defects in Arabidopsis thaliana plants bearing FAP knockouts. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Brief Communications Arising | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
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| | | | | | | | | | | | | | | | | | | | | | | | | | Immune self-reactivity triggered by drug-modified HLA-peptide repertoire ▶ | | | | Patricia T. Illing, Julian P. Vivian, Nadine L. Dudek, Lyudmila Kostenko, Zhenjun Chen et al. | | | | The paper describes the mechanism by which small-molecule drugs such as abacavir affect antigen presentation and consequently T-cell response in immunologically based drug reactions such as abacavir hypersensitivity syndrome (AHS) and carbamazepine-induced Stevens–Johnson syndrome (SJS). | | | | | | | | | | | | Crystal structure of a voltage-gated sodium channel in two potentially inactivated states ▶ | | | | Jian Payandeh, Tamer M. Gamal El-Din, Todd Scheuer, Ning Zheng & William A. Catterall | | | | X-ray crystal structures of a bacterial voltage-gated sodium channel in two ‘inactivated’ conformations are reported, revealing several conformational rearrangements that may underlie the electromechanical coupling of voltage sensor movement to inactivation of the pore. | | | | | | | | | | | | Structure of yeast Argonaute with guide RNA ▶ | | | | Kotaro Nakanishi, David E. Weinberg, David P. Bartel & Dinshaw J. Patel | | | | Argonaute proteins are an essential part of the guide-RNA–protein complex that carries out RNA-induced gene silencing; structure–function studies of the yeast complex reveal conserved features of the eukaryotic complex, which underlie formation of the catalytically active conformation. | | | | | | | | | | | | | | | | Peroxiredoxins are conserved markers of circadian rhythms ▶ | | | | Rachel S. Edgar, Edward W. Green, Yuwei Zhao, Gerben van Ooijen, Maria Olmedo et al. | | | | Daily oxidation–reduction cycles of peroxiredoxin proteins are shown to be conserved in all domains of life, including Bacteria, Archaea and Eukaryota. | | | | | | | | | | | | All-solid-state dye-sensitized solar cells with high efficiency ▶ | | | | In Chung, Byunghong Lee, Jiaqing He, Robert P. H. Chang & Mercouri G. Kanatzidis | | | | A solution-processable inorganic semiconductor is reported that can replace the liquid electrolyte of dye-sensitized solar cells, yielding all-solid-state solar cells with impressive energy conversion efficiencies. | | | | | | | | | | | | The complex of tmRNA–SmpB and EF-G on translocating ribosomes ▶ | | | | David J. F. Ramrath, Hiroshi Yamamoto, Kristian Rother, Daniela Wittek, Markus Pech et al. | | | | Stalled bacterial ribosomes can be rescued by interaction with SmpB protein and a highly structured transfer-messenger RNA, and a cryo-electron microscopy map of this complex now shows how EF-G-dependent translocation of this non-canonical ligand is facilitated by conformational changes in the ribosome and the transfer-messenger RNA. | | | | | | | | | | | | Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis ▶ | | | | Micheline N. Ngaki, Gordon V. Louie, Ryan N. Philippe, Gerard Manning, Florence Pojer et al. | | | | The diffusion limited stereospecific enzyme chalcone isomerase represents the adaptive evolution of a catalytically perfected enzyme from non-catalytic, fatty-acid-binding proteins (FAPs) with contemporary roles in plant fatty-acid metabolism as evidenced by altered fatty acid content and marked reproductive defects in Arabidopsis thaliana plants bearing FAP knockouts. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Attractive and repulsive Fermi polarons in two dimensions ▶ | | | | Marco Koschorreck, Daniel Pertot, Enrico Vogt, Bernd Fröhlich, Michael Feld et al. | | | | Investigations of a two-dimensional spin-imbalanced Fermi gas reveal the existence of the Fermi polaron for attractive and repulsive interactions, and the transition from the attractive polaron to a molecule. | | | | | | | | | | | | | | | | Superflares on solar-type stars ▶ | | | | Hiroyuki Maehara, Takuya Shibayama, Shota Notsu, Yuta Notsu, Takashi Nagao et al. | | | | Observations of superflares on solar-type stars indicate that they are associated with much larger starspots than appear on the Sun, occur more frequently on rapidly rotating stars and, contrary to a previous proposal, are not frequently associated with hot Jupiters. | | | | | | | | | | | | Tunable ion–photon entanglement in an optical cavity ▶ | | | | A. Stute, B. Casabone, P. Schindler, T. Monz, P. O. Schmidt et al. | | | | A method for achieving fully tunable entanglement between a single 40Ca+ ion and the polarization state of a single photon within an optical resonator is reported, providing a promising means of distributing information within quantum networks. | | | | | | | | | | | | All-solid-state dye-sensitized solar cells with high efficiency ▶ | | | | In Chung, Byunghong Lee, Jiaqing He, Robert P. H. Chang & Mercouri G. Kanatzidis | | | | A solution-processable inorganic semiconductor is reported that can replace the liquid electrolyte of dye-sensitized solar cells, yielding all-solid-state solar cells with impressive energy conversion efficiencies. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | | | | | | | | | | | | Emerging Microbes & Infections (EMI) - New open access journal launching in July 2012! EMI aims to provide a forum to publish articles related to all aspects of emerging pathogens, such as their previously unknown genotypic or phenotypic characteristics, their mechanisms of pathogenesis and evasion of immunity, and the diseases they cause. Submit today! | | | | | | | | | | |
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