The ISME Journal - Table of Contents alert Volume 6 Issue 1

TABLE OF CONTENTS Volume 6, Issue 1 (January 2012) In this issue Original Articles Short Communication Also new AOP Sign up for e-alerts Recommend to your library Web feed Subscribe Advertisement Subscribe to The ISME Journal Gain access to the latest research within microbial ecology.Subscribe today   Original Articles Top MICROBIAL POPULATION AND COMMUNITY ECOLOGY Saliva microbiomes distinguish caries-active from healthy human populations Fang Yang, Xiaowei Zeng, Kang Ning, Kuan-Liang Liu, Chien-Chi Lo, Wei Wang, Jie Chen, Dongmei Wang, Ranran Huang, Xingzhi Chang, Patrick S Chain, Gary Xie, Junqi Ling and Jian Xu ISME J 2012 6: 1-10; advance online publication, June 30, 2011; 10.1038/ismej.2011.71 Abstract | Full Text Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene Jeff S Bowman, Simon Rasmussen, Nikolaj Blom, Jody W Deming, Søren Rysgaard and Thomas Sicheritz-Ponten ISME J 2012 6: 11-20; advance online publication, June 30, 2011; 10.1038/ismej.2011.76 Abstract | Full Text Long-term effects of ocean warming on the prokaryotic community: evidence from the vibrios Luigi Vezzulli, Ingrid Brettar, Elisabetta Pezzati, Philip C Reid, Rita R Colwell, Manfred G Höfle and Carla Pruzzo ISME J 2012 6: 21-30; advance online publication, July 14, 2011; 10.1038/ismej.2011.89 Abstract | Full Text MICROBE-MICROBE AND MICROBE-HOST INTERACTIONS Evolution and diversification of Pseudomonas aeruginosa in the paranasal sinuses of cystic fibrosis children have implications for chronic lung infection Susse Kirkelund Hansen, Martin Holm Rau, Helle Krogh Johansen, Oana Ciofu, Lars Jelsbak, Lei Yang, Anders Folkesson, Hanne Østergaard Jarmer, Kasper Aanæs, Christian von Buchwald, Niels Høiby and Søren Molin ISME J 2012 6: 31-45; advance online publication, June 30, 2011; 10.1038/ismej.2011.83 Abstract | Full Text The oral metagenome in health and disease Pedro Belda-Ferre, Luis David Alcaraz, Raúl Cabrera-Rubio, Héctor Romero, Aurea Simón-Soro, Miguel Pignatelli and Alex Mira ISME J 2012 6: 46-56; advance online publication, June 30, 2011; 10.1038/ismej.2011.85 Abstract | Full Text Abundance and diversity of mucosa-associated hydrogenotrophic microbes in the healthy human colon Gerardo M Nava, Franck Carbonero, Jennifer A Croix, Eugene Greenberg and H Rex Gaskins ISME J 2012 6: 57-70; advance online publication, July 14, 2011; 10.1038/ismej.2011.90 Abstract | Full Text INTEGRATED GENOMICS AND POST-GENOMICS APPROACHES IN MICROBIAL ECOLOGY The significance of nitrogen cost minimization in proteomes of marine microorganisms Joseph J Grzymski and Alex M Dussaq ISME J 2012 6: 71-80; advance online publication, June 23, 2011; 10.1038/ismej.2011.72 Abstract | Full Text De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities Priya Narasingarao, Sheila Podell, Juan A Ugalde, Céline Brochier-Armanet, Joanne B Emerson, Jochen J Brocks, Karla B Heidelberg, Jillian F Banfield and Eric E Allen ISME J 2012 6: 81-93; advance online publication, June 30, 2011; 10.1038/ismej.2011.78 Abstract | Full Text Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys Jeffrey J Werner, Omry Koren, Philip Hugenholtz, Todd Z DeSantis, William A Walters, J Gregory Caporaso, Largus T Angenent, Rob Knight and Ruth E Ley ISME J 2012 6: 94-103; advance online publication, June 30, 2011; 10.1038/ismej.2011.82 Abstract | Full Text Expression patterns of mRNAs for methanotrophy and thiotrophy in symbionts of the hydrothermal vent mussel Bathymodiolus puteoserpentis Annelie Wendeberg, Frank U Zielinski, Christian Borowski and Nicole Dubilier ISME J 2012 6: 104-112; advance online publication, July 7, 2011; 10.1038/ismej.2011.81 Abstract | Full Text High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton Manuel Martinez-Garcia, Brandon K Swan, Nicole J Poulton, Monica Lluesma Gomez, Dashiell Masland, Michael E Sieracki and Ramunas Stepanauskas ISME J 2012 6: 113-123; advance online publication, June 30, 2011; 10.1038/ismej.2011.84 Abstract | Full Text Proteomic insights into the lifestyle of an environmentally relevant marine bacterium Joseph Alexander Christie-Oleza, Bernard Fernandez, Balbina Nogales, Rafael Bosch and Jean Armengaud ISME J 2012 6: 124-135; advance online publication, July 21, 2011; 10.1038/ismej.2011.86 Abstract | Full Text The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions Stefano Ghignone, Alessandra Salvioli, Iulia Anca, Erica Lumini, Giuseppe Ortu, Luca Petiti, Stéphane Cruveiller, Valeria Bianciotto, Pietro Piffanelli, Luisa Lanfranco and Paola Bonfante ISME J 2012 6: 136-145; advance online publication, August 25, 2011; 10.1038/ismej.2011.110 Abstract | Full Text Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus Dawn E Holmes, Carla Risso, Jessica A Smith and Derek R Lovley ISME J 2012 6: 146-157; advance online publication, July 21, 2011; 10.1038/ismej.2011.88 Abstract | Full Text GEOMICROBIOLOGY AND MICROBIAL CONTRIBUTIONS TO GEOCHEMICAL CYCLES Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm Daniel S Jones, Heidi L Albrecht, Katherine S Dawson, Irene Schaperdoth, Katherine H Freeman, Yundan Pi, Ann Pearson and Jennifer L Macalady ISME J 2012 6: 158-170; advance online publication, June 30, 2011; 10.1038/ismej.2011.75 Abstract | Full Text Hydrocarbon monooxygenase in Mycobacterium: recombinant expression of a member of the ammonia monooxygenase superfamily Nicholas V Coleman, Nga B Le, Mai A Ly, Hitoha E Ogawa, Victoria McCarl, Neil L Wilson and Andrew J Holmes ISME J 2012 6: 171-182; advance online publication, July 28, 2011; 10.1038/ismej.2011.98 Abstract | Full Text MICROBIAL ECOLOGY AND FUNCTIONAL DIVERSITY OF NATURAL HABITATS Illumina-based analysis of microbial community diversity Patrick H Degnan and Howard Ochman ISME J 2012 6: 183-194; advance online publication, June 16, 2011; 10.1038/ismej.2011.74 Abstract | Full Text Analysis of bacterial core communities in the central Baltic by comparative RNA–DNA-based fingerprinting provides links to structure–function relationships Ingrid Brettar, Richard Christen and Manfred G Höfle ISME J 2012 6: 195-212; advance online publication, June 23, 2011; 10.1038/ismej.2011.80 Abstract | Full Text Endogeic earthworms shape bacterial functional communities and affect organic matter mineralization in a tropical soil Laetitia Bernard, Lydie Chapuis-Lardy, Tantely Razafimbelo, Malalatiana Razafindrakoto, Anne-Laure Pablo, Elvire Legname, Julie Poulain, Thomas Brüls, Michael O'Donohue, Alain Brauman, Jean-Luc Chotte and Eric Blanchart ISME J 2012 6: 213-222; advance online publication, July 14, 2011; 10.1038/ismej.2011.87 Abstract | Full Text Short Communication Top GEOMICROBIOLOGY AND MICROBIAL CONTRIBUTIONS TO GEOCHEMICAL CYCLES DddW, a third DMSP lyase in a model Roseobacter marine bacterium, Ruegeria pomeroyi DSS-3 Jonathan D Todd, Mark Kirkwood, Simone Newton-Payne and Andrew W B Johnston ISME J 2012 6: 223-226; advance online publication, June 16, 2011; 10.1038/ismej.2011.79 Abstract | Full Text Advertisement If you are unable to access the articles in this Table of Contents e-alert, your library may not subscribe to this journal. 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