Saturday, June 22, 2019

Table of Contents Alert: The EMBO Journal, Vol. 38, No. 12, 17 June 2019

Cover Image The EMBO Journal
Volume 38, Issue 12

17 June 2019


News & Views

Autophagy: clocking in for the night shift
Rebekah C Brooks, Chi V Dang

e102434 | First Published: 27 May 2019

A new study reveals that transcription factors TFEB and TFE3 transactivate the molecular clock component Rev‐erbα during fasting and rest phase, thereby linking feeding and autophagy to circadian physiology of the whole animal.

BASC‐ing in the glow: bronchioalveolar stem cells get their place in the lung
Maria C Basil, Edward E Morrisey

e102344 | First Published: 28 May 2019

New work reveals a rare population of airway stem cells to contribute to regeneration of epithelia upon injury in vivo.

Review

Epigenetic aberrations in human pluripotent stem cells
Shiran Bar, Nissim Benvenisty

e101033 | First Published: 14 May 2019

This review summarises our current knowledge on the epigenetic abnormalities occurring in human pluripotent stem cells, their origins as well as consequences for modeling development and disease.

Articles

Nutrient‐sensitive transcription factors TFEB and TFE3 couple autophagy and metabolism to the peripheral clock
Nunzia Pastore, Anna Vainshtein, Niculin J Herz, Tuong Huynh, Lorenzo Brunetti, Tiemo J Klisch, Margherita Mutarelli, Patrizia Annunziata, Kenichiro Kinouchi, Nicola Brunetti‐Pierri, Paolo Sassone‐Corsi, Andrea Ballabio

e101347 | First Published: 24 May 2019

Crosstalk between TFEB/TFE3 transcription factors and REV‐ERBα repressor contributes to the circadian oscillation of autophagy.

Bronchioalveolar stem cells are a main source for regeneration of distal lung epithelia in vivo
Isabelle Salwig, Birgit Spitznagel, Ana Ivonne Vazquez‐Armendariz, Keynoosh Khalooghi, Stefan Guenther, Susanne Herold, Marten Szibor, Thomas Braun

e102099 | First Published: 26 April 2019

A genetic complementation approach identifies lung stem cells located at the bronchioalveolar duct junction as a critical component of the mouse distal airway repair.

Open Access
The Nucleosome Remodelling and Deacetylation complex suppresses transcriptional noise during lineage commitment
Thomas Burgold, Michael Barber, Susan Kloet, Julie Cramard, Sarah Gharbi, Robin Floyd, Masaki Kinoshita, Meryem Ralser, Michiel Vermeulen, Nicola Reynolds, Sabine Dietmann, Brian Hendrich

e100788 | First Published: 29 April 2019

Paralogous NuRD chromatin remodeler components Mta1, Mta2, and Mta3 are functionally redundant and non‐essential in mouse ES cells, but required for transcriptional repression to ensure appropriate lineage specification.

Live‐cell imaging reveals the interplay between transcription factors, nucleosomes, and bursting
Benjamin T Donovan, Anh Huynh, David A Ball, Heta P Patel, Michael G Poirier, Daniel R Larson, Matthew L Ferguson, Tineke L Lenstra

e100809 | First Published: 17 May 2019

Single‐molecule approaches to correlate Gal4 transcription factor binding with target gene transcriptional bursting kinetics suggests that multiple RNA polymerases initiate transcription during one burst as long as the transcription factor is bound to DNA.

Expression of endogenous retroviruses reflects increased usage of atypical enhancers in T cells
Saliha Azébi, Eric Batsché, Frédérique Michel, Etienne Kornobis, Christian Muchardt

e101107 | First Published: 08 May 2019

Stress‐responsive cis‐enhancer activity of human endogenous retroviruses is chronically induced in the context of autoimmune diseases.

Anoctamin 8 tethers endoplasmic reticulum and plasma membrane for assembly of Ca2+ signaling complexes at the ER/PM compartment
Archana Jha, Woo Young Chung, Laura Vachel, Jozsef Maleth, Sarah Lake, Guofeng Zhang, Malini Ahuja, Shmuel Muallem

e101452 | First Published: 06 May 2019

Anoctamin 8 exerts channel‐independent roles in ER/PM junction formation and receptor‐stimulated Ca2+ oscillations.

Open Access
Extracellular interface between APP and Nicastrin regulates Aβ length and response to γ‐secretase modulators
Dieter Petit, Manuel Hitzenberger, Sam Lismont, Katarzyna Marta Zoltowska, Natalie S Ryan, Marc Mercken, François Bischoff, Martin Zacharias, Lucía Chávez‐Gutiérrez

e101494 | First Published: 20 May 2019

A direct interaction between the gamma secretase subunit Nicastrin and APP regulates the stability and processivity of the γ‐secretase/substrate complex to affect Aβ length and Alzheimer disease pathogenicity.

Resource

3D model for CAR‐mediated cytotoxicity using patient‐derived colorectal cancer organoids
Theresa E Schnalzger, Marnix HP de Groot, Congcong Zhang, Mohammed H Mosa, Birgitta E Michels, Jasmin Röder, Tahmineh Darvishi, Winfried S Wels, Henner F Farin

e100928 | First Published: 29 April 2019

A preclinical organoid co‐culture allows testing of immunotherapy with chimeric antigen receptor (CAR)‐engineered lymphocytes in a personalised tissue‐like environment.

Retraction

Retraction: "CITRX thioredoxin interacts with the tomato Cf‐9 resistance protein and negatively regulates defence"
Susana Rivas, Alejandra Rougon‐Cardoso, Matthew Smoker, Leif Schauser, Hirofumi Yoshioka, Jonathan DG Jones

e102435 | First Published: 17 June 2019

This article is a retraction.

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