Wednesday, March 2, 2016

Nature contents: 03 March 2016

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  journal cover  
Nature Volume 531 Issue 7592
 
This Week  
 
 
Editorials  
 
 
 
Unintended consequences
After the introduction of a clumsily worded new rule, the UK government should move quickly to reassure scientists that they can continue to advise policymakers.
Future present
A young global-sustainability platform deserves time to find its feet.
Brain power
As brain stimulation finds non-medical uses, now is the time to consider its implications.
 
 
A*STAR Research - Highlighting the best of research at the Agency for Science, Technology and Research (A*STAR), Singapore's premier research organization
Chemistry: Ladder polymers stand apart | Genomics: Unlocking the mystery of an age-old secret | Materials: Fine-grained memory loss 
 
Download the A*STAR Research app now!
World View  
 
 
 
Stop needless dispute of science in the courts
Primers on various scientific topics could be used across trials to avoid wasting time on debating basic points, argues David Neuberger.
 
Seven Days  
 
 
 
The week in science: 26 February–3 March 2016
Italian researchers protest over government support; Illumina launches lawsuit over nanopores; and report published on women in academia.
Research Highlights  
 
 
 
Hearing is fearing for raccoons | Human evolution: Interbreeding in ancient Africa | Developmental biology: Gene lets animals tell left from right | Climate science: Where climate models fall short | Neuroscience: Light rewrites memories of place | Chemistry: Catalyst for clean drinking water | Cancer: Immune changes drive metastasis | Cosmology: Missing matter may hide in voids | Climate science: Sample reveals Antarctic history
Social Selection
How many replication studies are enough?
 
 

 
The Vilcek Foundation congratulates the recipients of the 2016 Vilcek Prizes in Biomedical Science
 
Dan R. Littman (NYU School of Medicine) receives $100,000 Vilcek Prize
Fernando Camargo (Boston Children's Hospital & Harvard University),
Roberta Capp (University of Colorado School of Medicine), and
Houra Merrikh (University of Washington School of Medicine) each win $50,000 Vilcek Prize for Creative Promise
 
 
 
News in Focus
 
Speedier Arctic data as warm winter shrinks sea ice
Scientists push for better monitoring of what remains.
Alexandra Witze
  India’s budget keeps dream of genomics hub alive
Biotechnology agency wants to upgrade capabilities to kick-start economic growth.
T. V. Padma
Conflicting laws threaten Ukrainian science
Country’s austerity budget stands in way of law to modernize Soviet-era academy.
Quirin Schiermeier
  Spectre of Ebola haunts Zika response
Agencies rush to show that outbreak tactics have improved.
Erika Check Hayden
Epic El Niño yields massive data trove
Waning warming event studied in unprecedented detail.
Jeff Tollefson
  Successful test drive for space-based gravitational-wave detector
Mission paves the way for planned €1-billion space observatory.
Elizabeth Gibney
Features  
 
 
 
Can fracking power Europe?
Several countries hope to unleash vast natural-gas reserves through fracking, but drilling attempts have been disappointing.
Mason Inman
Nanolights are bright, beautiful — and increasingly useful
Virus-sized particles that fluoresce in every colour could revolutionize applications from television displays to cancer treatment.
XiaoZhi Lim
Multimedia  
 
 
Nature Podcast: 3 March 2016
This week, more fast radio bursts spotted, how do you know where you are when you’re not moving, and listening in on a whale banquet.
Correction  
 
 
Correction
 
 
Two NO COST pilot projects to be awarded. Register for our webcast on Building Better Therapeutics with Metabolomics and be eligible to submit your abstract for 1 of 2 50 sample projects using metabolomics.
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Comment
 
Research management: Five years on from Fukushima
To build sustainability and trust, energy and environment research in Japan must become more interdisciplinary and global, say Masahiro Sugiyama and colleagues.
Masahiro Sugiyama, Ichiro Sakata, Hideaki Shiroyama et al.
Books and Arts  
 
 
 
Public health: Tracing the social roots of health
Andrew Steptoe applauds a cogent exploration of Britain's groundbreaking longitudinal birth-cohort studies.
Andrew Steptoe
Books in brief
Barbara Kiser reviews five of the week's best science picks.
Barbara Kiser
Ecology: Biology distilled
Brian J. Enquist reflects on a blueprint to guide the recovery of life on Earth.
Brian J. Enquist
Correspondence  
 
 
 
Research data: Japan justifies whaling stance
Joji Morishita
  Policy: NIH push to stop sexual harassment
Michael Lauer, Hannah Valantine, Francis S. Collins
Animal research: Australians rush to reject primate bill
Nicholas Price, James Bourne, Marcello Rosa
  Transparency: issues are not that simple
Warren Pearce, Sarah Hartley, Brigitte Nerlich
Transparency: an opaque illustration
Karen Shashok, Remedios Melero
 
 
 
Specials
 
TOOLBOX  
 
 
 
The manuscript-editing marketplace
A peer-to-peer website aims to disrupt the author-services industry.
Jeffrey M. Perkel
Web tool aims to reduce flaws in animal studies
‘Experimental Design Assistant’ helps to give feedback on research plans.
Daniel Cressey
Outlook: Cognitive health  
 
 
 
Cognitive health
Michelle Grayson
  Smart drugs: A dose of intelligence
Amber Dance
Ageing: Restoration project
Annabel McGilvray
  Neurostimulation: Bright sparks
Katherine Bourzac
Perspective: Time to expand the mind
Nicholas S. Fitz, Peter B. Reiner
  Brain training: Memory games
Simon Makin
Brain food: Clever eating
Sujata Gupta
  Social networks: Better together
Chelsea Wald
Neural modelling: Abstractions of the mind
Kelly Rae Chi
  Neurobiology: Rise of resilience
Anthony King
Produced with support from
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Research
 
NEW ONLINE  
 
 
 
Neurodevelopment: Regeneration switch is a gas
Nitric oxide gas has now been found to act as a switch during developmental remodelling of axonal projections from neurons: high gas levels promote the degeneration of unwanted axons and low levels support subsequent regrowth.
Failure of RQC machinery causes protein aggregation and proteotoxic stress
Defects in the ribosome quality control (RQC) complex, which clears proteins that stalled during translation, can cause neurodegeneration; here it is shown that in RQC-defective cells a peptide tail added by the RQC subunit 2 to stalled polypeptides promotes their aggregation and the sequestration of chaperones in these aggregates, affecting normal protein quality control processes.
A hippocampal network for spatial coding during immobility and sleep
In the mammalian navigational system, neurons have been identified in the CA2 region of the hippocampus that keep track of position when an animal is not moving.
Vast assembly of vocal marine mammals from diverse species on fish spawning ground
Vocalizations were recorded for over eight distinct whale species as they converged on a shoal of herring to feed; the predators divided the shoal into overlapping but species-specific foraging sectors and the activities of the whales changed between day and night.
NAFLD causes selective CD4+ T lymphocyte loss and promotes hepatocarcinogenesis
Non-alcoholic fatty liver disease (NAFLD) is shown to promote hepatocellular carcinoma through the generation of linoleic acid, disruption of mitochondrial function and selective loss of CD4+ T cells, leading to impaired anti-tumour immunity.
MARCKS-like protein is an initiating molecule in axolotl appendage regeneration
The salamander, or axolotl, is well known to be able to regenerate missing body parts, but the signals that drive the initial proliferative response were unclear; now, a secreted protein has been identified that induces the initial cell cycle response after injury.
Positron annihilation signatures associated with the outburst of the microquasar V404 Cygni
Observations of γ-ray emission from the microquasar V404 Cygni during a recent period of strong flaring activity show spectral features at around 511 kiloelectronvolts, which are clear signatures of variable positron annihilation, implying a high rate of positron production.
MIMIVIRE is a defence system in mimivirus that confers resistance to virophage
MIMIVIRE is a novel nucleic-acid-based immune system against virophage infection in the giant virus mimivirus.
A repeating fast radio burst
Observations of repeated fast radio bursts, having dispersion measures and sky positions consistent with those of FRB 121102, show that the signals do not originate in a single cataclysmic event and may come from a young, highly magnetized, extragalactic neutron star.
Late Tharsis formation and implications for early Mars
By calculating the rotational figure of Mars and its surface topography before the Tharsis volcanic region caused true polar wander, it is shown that Tharsis formed during the Noachian and Hesperian periods at about the same time as the valley networks; early Mars climate simulations suggest icy precipitation in a latitudinal band in the southern hemisphere.
Therapeutic efficacy of the small molecule GS-5734 against Ebola virus in rhesus monkeys
The discovery is reported of a small molecule drug, GS-5734, which has antiviral activity against Ebola virus and other filoviruses, and is capable of providing post-exposure therapeutic protection against lethal disease in 100% of drug-treated nonhuman primates infected with Ebola virus; the drug targets viral RNA polymerase and can distribute to sanctuary sites (such as testes, eyes and brain), suggesting that it may be able to clear persistent virus infection.
Corrigendum: Observation of polar vortices in oxide superlattices
News and Views  
 
 
 
Organic chemistry: Reactions triggered electrically
Limin Xiang, N. J. Tao
Evolution: Mitochondria in the second act
Thijs J. G. Ettema
50 & 100 Years Ago
 
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Gravitational waves: Dawn of a new astronomy
M. Coleman Miller
 
Stem cells: Dietary fat promotes intestinal dysregulation
Chi Luo, Pere Puigserver
Space science: Cosmic rays beyond the knees
Andrew M. Taylor
 
Regeneration: Stem cells make the bowel nervous
Robert O. Heuckeroth
Articles  
 
 
 
Genomic analyses identify molecular subtypes of pancreatic cancer
An integrated genomic analysis of 456 human pancreatic ductal adenocarcinomas identifies four subtypes defined by transcriptional expression profiles and show that these are associated with distinct histopathological characteristics and differential prognosis.
Peter Bailey, David K. Chang, Katia Nones et al.
High-fat diet enhances stemness and tumorigenicity of intestinal progenitors
A high-fat diet increases the number of intestinal stem cells in mammals, both in vivo and in intestinal organoids; a pathway that involves PPAR-δ confers organoid-initiating capacity to non-stem cells and induces them to form in vivo tumours after loss of the Apc tumour suppressor.
Semir Beyaz, Miyeko D. Mana, Jatin Roper et al.
Priming and polymerization of a bacterial contractile tail structure
A combination of X-ray crystallography, electron microscopy, functional assays and time-lapse fluorescence microscopy shows that a protein of previously unknown function, TssA, forms a dodecameric complex that interacts with components of the tube and sheath of the type VI secretion system of bacteria, and that it primes and coordinates biogenesis of both the tail tube and the sheath.
Abdelrahim Zoued, Eric Durand, Yannick R. Brunet et al.
Structural basis of outer membrane protein insertion by the BAM complex
Two crystal structures of the Escherichia coli β-barrel assembly machinery (BAM complex) are presented, one of which includes all five subunits (BamA–BamE), in two distinct conformational states; together with functional assays and molecular dynamics stimulations, these structures help to generate a model for outer membrane protein insertion.
Yinghong Gu, Huanyu Li, Haohao Dong et al.
Letters  
 
 
 
A large light-mass component of cosmic rays at 1017–1017.5 electronvolts from radio observations
High-resolution radio measurements of air showers—cascades of secondary particles in the atmosphere initiated by cosmic rays—reveal that cosmic rays with energies of 1017–1017.5 electronvolts have a mixed composition, with light elements (protons and helium nuclei) making up 80 per cent of their mass.
S. Buitink, A. Corstanje, H. Falcke et al.
Controlling spin relaxation with a cavity
By coupling donor spins in silicon to a superconducting microwave cavity and tuning the spins to the cavity resonance, the rate of spin relaxation is increased by three orders of magnitude compared to that of detuned spins; in such a regime, spontaneous emission of radiation is the dominant mechanism of spin relaxation.
A. Bienfait, J. J. Pla, Y. Kubo et al.
Condensation on slippery asymmetric bumps
A surface engineering approach is described that is inspired by the water-condensation capability of the bumps on desert beetles, the droplet transportation facilitated by cactus spines and the slippery coating of the pitcher plant, to produce a structure with many water-harvesting applications.
Kyoo-Chul Park, Philseok Kim, Alison Grinthal et al.
Stable amorphous georgeite as a precursor to a high-activity catalyst
Hydroxycarbonate minerals such as zincian malachite and aurichalcite are well known precursors to catalysts for methanol-synthesis and low-temperature water–gas shift reactions; here, a supercritical antisolvent method is used to prepare highly stable georgeite—a hydroxycarbonate mineral that has hitherto been ignored because of its rarity, but which is found to be a superior catalyst precursor.
Simon A. Kondrat, Paul J. Smith, Peter P. Wells et al.
Electrostatic catalysis of a Diels–Alder reaction
Theory suggests that many chemical reactions (not simply, as is often thought, redox reactions) might be catalysed by an applied electric field; experimental evidence for this is now provided from single-molecule studies of the formation of carbon–carbon bonds in a Diels–Alder reaction.
Albert C. Aragonès, Naomi L. Haworth, Nadim Darwish et al.
Upper-plate controls on co-seismic slip in the 2011 magnitude 9.0 Tohoku-oki earthquake
Residual topography and gravity anomalies reveal a tectonic boundary in northeast Japan, which is proposed to represent the offshore continuation of the Median Tectonic Line; the contrast in frictional properties across this structure may control earthquake behaviour there, as recently demonstrated by the giant 2011 Tohoku-oki earthquake.
Dan Bassett, David T. Sandwell, Yuri Fialko et al.
Evidence from cyclostomes for complex regionalization of the ancestral vertebrate brain
The brain of the hagfish, a cyclostome related to the lamprey, develops domains equivalent to the median ganglionic eminence and the rhombic lip, resembling the brains of gnathostomes (jawed vertebrates), suggesting that brain regionalization in jawed vertebrates occurred before the divergence of cyclostomes and gnathostomes more than 500 million years ago.
Fumiaki Sugahara, Juan Pascual-Anaya, Yasuhiro Oisi et al.
Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry
Evidence that among the eukaryotic ancestor genes, those derived from the proto-mitochondrion have the closest evolutionary distances to their bacterial relatives.
Alexandros A. Pittis, Toni Gabaldón
Deriving human ENS lineages for cell therapy and drug discovery in Hirschsprung disease
A differentiation protocol to obtain enteric nervous system (ENS) progenitors and a range of neurons from human pluripotent stem cells is developed; the cells can migrate and graft to the colon of a chick embryo and an adult mouse colon, including in a mouse model of Hirschsprung disease, in which a functional rescue is observed.
Faranak Fattahi, Julius A Steinbeck, Sonja Kriks et al.
Mutant Kras copy number defines metabolic reprogramming and therapeutic susceptibilities
Mutant Kras lung tumours are not a single disease but comprise two classes of tumours with distinct metabolic profiles, prognosis and therapeutic susceptibility, which can be discriminated by their relative mutant Kras allelic content.
Emma M. Kerr, Edoardo Gaude, Frances K. Turrell et al.
Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer
The high-resolution cryo-electron microscopy structure of a pre-fusion coronavirus spike trimer from mouse hepatitis virus is presented; the structure reveals architectural similarities to paramyxovirus F proteins, suggesting that these fusion proteins may have evolved from a distant common ancestor.
Alexandra C. Walls, M. Alejandra Tortorici, Berend-Jan Bosch et al.
Pre-fusion structure of a human coronavirus spike protein
A 4.0 Å resolution cryo-electron microscopy structure of the pre-fusion form of the trimeric spike from the human coronavirus HKU1 provides insight into how the spike protein mediates host-cell attachment and membrane fusion.
Robert N. Kirchdoerfer, Christopher A. Cottrell, Nianshuang Wang et al.
Crystal structure of eukaryotic translation initiation factor 2B
The crystal structure of Schizosaccharomyces pombe guanine nucleotide exchange factor eIF2B, providing a structural framework for the eIF2B-mediated mechanism of stress-induced translational control.
Kazuhiro Kashiwagi, Mari Takahashi, Madoka Nishimoto et al.
Corrigenda  
 
 
 
Corrigendum: A SUMOylation-defective MITF germline mutation predisposes to melanoma and renal carcinoma
Corine Bertolotto, Fabienne Lesueur, Sandy Giuliano et al.
Corrigendum: Acute stress facilitates long-lasting changes in cholinergic gene expression
Daniela Kaufer, Alon Friedman, Shlomo Seidman et al.
Corrigendum: Identification of the pollen self-incompatibility determinant in Papaver rhoeas
Michael J. Wheeler, Barend H. J. de Graaf, Natalie Hadjiosif et al.
 
 

Roles for mesenchymal stem cells as medicinal signaling cells
Understanding the in vivo identity and function of mesenchymal stem cells (MSCs) is vital to fully exploit their therapeutic potential. This poster summarizes current thinking regarding the role of MSCs in vivo and also describes how to isolate MSCs and grow them in vitro.
Download the poster free online
.

Produced with support from:
STEMCELL Technologies
 
 
Careers & Jobs
 
Feature  
 
 
 
Lab life: Lone-parent scientist
Helen Shen
Q&AS  
 
 
 
Turning point: Gun-crime analyst
Virginia Gewin
Futures  
 
 
Ajdenia
Let there be sunlight.
Natalia Theodoridou
 
 
 
 
 

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