The ISME Journal - Table of Contents alert Volume 10 Issue 1

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TABLE OF CONTENTS Volume 10, Issue 1 (January 2016) In this issue Commentary Perspective Original Articles Short Communications Also new AOP Sign up for e-alerts Recommend to your library Web feed Subscribe Commentary Top Tritagonist as a new term for uncharacterised microorganisms in environmental systems OPEN Florian M Freimoser, Cosima Pelludat and Mitja N P Remus-Emsermann ISME J 2016 10: 1-3; advance online publication, June 2, 2015; 10.1038/ismej.2015.92 Full Text Perspective Top Can resistance against quorum-sensing interference be selected? Rodolfo García-Contreras, Toshinari Maeda and Thomas K Wood ISME J 2016 10: 4-10; advance online publication, May 29, 2015; 10.1038/ismej.2015.84 Abstract | Full Text Original Articles Top The activated sludge ecosystem contains a core community of abundant organisms OPEN Aaron M Saunders, Mads Albertsen, Jes Vollertsen and Per H Nielsen ISME J 2016 10: 11-20; advance online publication, August 11, 2015; 10.1038/ismej.2015.117 Abstract | Full Text Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes Haïtham Sghaier, Karima Hezbri, Faten Ghodhbane-Gtari, Petar Pujic, Arnab Sen, Daniele Daffonchio, Abdellatif Boudabous, Louis S Tisa, Hans-Peter Klenk, Jean Armengaud, Philippe Normand and Maher Gtari ISME J 2016 10: 21-29; advance online publication, June 30, 2015; 10.1038/ismej.2015.108 Abstract | Full Text Density-dependent adaptive resistance allows swimming bacteria to colonize an antibiotic gradient Felix J H Hol, Bert Hubert, Cees Dekker and Juan E Keymer ISME J 2016 10: 30-38; advance online publication, July 3, 2015; 10.1038/ismej.2015.107 Abstract | Full Text Shifts in bacterial community composition associated with increased carbon cycling in a mosaic of phytoplankton blooms Marine Landa, Stéphane Blain, Urania Christaki, Sébastien Monchy and Ingrid Obernosterer ISME J 2016 10: 39-50; advance online publication, July 21, 2015; 10.1038/ismej.2015.105 Abstract | Full Text Host–microbe interactions as a driver of acclimation to salinity gradients in brown algal cultures Simon M Dittami, Laëtitia Duboscq-Bidot, Morgan Perennou, Angélique Gobet, Erwan Corre, Catherine Boyen and Thierry Tonon ISME J 2016 10: 51-63; advance online publication, June 26, 2015; 10.1038/ismej.2015.104 Abstract | Full Text Rhizobium–legume symbiosis in the absence of Nod factors: two possible scenarios with or without the T3SS Shin Okazaki, Panlada Tittabutr, Albin Teulet, Julien Thouin, Joël Fardoux, Clémence Chaintreuil, Djamel Gully, Jean- François Arrighi, Noriyuki Furuta, Hiroki Miwa, Michiko Yasuda, Nico Nouwen, Neung Teaumroong and Eric Giraud ISME J 2016 10: 64-74; advance online publication, July 10, 2015; 10.1038/ismej.2015.103 Abstract | Full Text Environmental stability affects phenotypic evolution in a globally distributed marine picoplankton C-Elisa Schaum, Björn Rost and Sinéad Collins ISME J 2016 10: 75-84; advance online publication, June 30, 2015; 10.1038/ismej.2015.102 Abstract | Full Text Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota OPEN Eduard Vico Oton, Christopher Quince, Graeme W Nicol, James I Prosser and Cécile Gubry-Rangin ISME J 2016 10: 85-96; advance online publication, July 3, 2015; 10.1038/ismej.2015.101 Abstract | Full Text Dysbiosis of upper respiratory tract microbiota in elderly pneumonia patients Wouter A A de Steenhuijsen Piters, Elisabeth G W Huijskens, Anne L Wyllie, Giske Biesbroek, Menno R van den Bergh, Reinier H Veenhoven, Xinhui Wang, Krzysztof Trzciński, Marc J Bonten, John W A Rossen, Elisabeth A M Sanders and Debby Bogaert ISME J 2016 10: 97-108; advance online publication, July 7, 2015; 10.1038/ismej.2015.99 Abstract | Full Text Microbial response to simulated global change is phylogenetically conserved and linked with functional potential Anthony S Amend, Adam C Martiny, Steven D Allison, Renaud Berlemont, Michael L Goulden, Ying Lu, Kathleen K Treseder, Claudia Weihe and Jennifer B H Martiny ISME J 2016 10: 109-118; advance online publication, June 5, 2015; 10.1038/ismej.2015.96 Abstract | Full Text Microbial and biochemical basis of a Fusarium wilt-suppressive soil Jae-Yul Cha, Sangjo Han, Hee-Jeon Hong, Hyunji Cho, Daran Kim, Youngho Kwon, Soon-Kyeong Kwon, Max Crüsemann, Yong Bok Lee, Jihyun F Kim, Guri Giaever, Corey Nislow, Bradley S Moore, Linda S Thomashow, David M Weller and Youn-Sig Kwak ISME J 2016 10: 119-129; advance online publication, June 9, 2015; 10.1038/ismej.2015.95 Abstract | Full Text Symbiosis with an endobacterium increases the fitness of a mycorrhizal fungus, raising its bioenergetic potential Alessandra Salvioli, Stefano Ghignone, Mara Novero, Lorella Navazio, Francesco Venice, Paolo Bagnaresi and Paola Bonfante ISME J 2016 10: 130-144; advance online publication, June 5, 2015; 10.1038/ismej.2015.91 Abstract | Full Text Neonatal environment exerts a sustained influence on the development of the intestinal microbiota and metabolic phenotype Claire A Merrifield, Marie C Lewis, Bernard Berger, Olivier Cloarec, Silke S Heinzmann, Florence Charton, Lutz Krause, Nadine S Levin, Swantje Duncker, Annick Mercenier, Elaine Holmes, Mick Bailey and Jeremy K Nicholson ISME J 2016 10: 145-157; advance online publication, June 12, 2015; 10.1038/ismej.2015.90 Abstract | Full Text Directed assembly of a bacterial quorum Matthew D Servinsky, Jessica L Terrell, Chen-Yu Tsao, Hsuan-Chen Wu, David N Quan, Amin Zargar, Patrick C Allen, Christopher M Byrd, Christian J Sund and William E Bentley ISME J 2016 10: 158-169; advance online publication, June 5, 2015; 10.1038/ismej.2015.89 Abstract | Full Text Composition and temporal stability of the gut microbiota in older persons OPEN Ian B Jeffery, Denise B Lynch and Paul W O'Toole ISME J 2016 10: 170-182; advance online publication, June 19, 2015; 10.1038/ismej.2015.88 Abstract | Full Text Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics Rendy Ruvindy, Richard Allen White III, Brett Anthony Neilan and Brendan Paul Burns ISME J 2016 10: 183-196; advance online publication, May 29, 2015; 10.1038/ismej.2015.87 Abstract | Full Text Genomic potential for arsenic efflux and methylation varies among global Prochlorococcus populations Jaclyn K Saunders and Gabrielle Rocap ISME J 2016 10: 197-209; advance online publication, July 7, 2015; 10.1038/ismej.2015.85 Abstract | Full Text Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous ‘streamer’ community OPEN Jacob P Beam, Zackary J Jay, Markus C Schmid, Douglas B Rusch, Margaret F Romine, Ryan de M Jennings, Mark A Kozubal, Susannah G Tringe, Michael Wagner and William P Inskeep ISME J 2016 10: 210-224; advance online publication, July 3, 2015; 10.1038/ismej.2015.83 Abstract | Full Text Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center Karthik Anantharaman, John A Breier and Gregory J Dick ISME J 2016 10: 225-239; advance online publication, June 5, 2015; 10.1038/ismej.2015.81 Abstract | Full Text Elemental sulfur and acetate can support life of a novel strictly anaerobic haloarchaeon Dimitry Y Sorokin, Ilya V Kublanov, Sergei N Gavrilov, David Rojo, Pawel Roman, Peter N Golyshin, Vladlen Z Slepak, Francesco Smedile, Manuel Ferrer, Enzo Messina, Violetta La Cono and Michail M Yakimov ISME J 2016 10: 240-252; advance online publication, May 15, 2015; 10.1038/ismej.2015.79 Abstract | Full Text Molecular mechanisms underlying the close association between soil Burkholderia and fungi Nejc Stopnisek, Daniela Zühlke, Aurélien Carlier, Albert Barberán, Noah Fierer, Dörte Becher, Katharina Riedel, Leo Eberl and Laure Weisskopf ISME J 2016 10: 253-264; advance online publication, May 19, 2015; 10.1038/ismej.2015.73 Abstract | Full Text Short Communications Top Fungal invasion of the rhizosphere microbiome Emilie Chapelle, Rodrigo Mendes, Peter A HM Bakker and Jos M Raaijmakers ISME J 2016 10: 265-268; advance online publication, May 29, 2015; 10.1038/ismej.2015.82 Abstract | Full Text ProDeGe: a computational protocol for fully automated decontamination of genomes OPEN Kristin Tennessen, Evan Andersen, Scott Clingenpeel, Christian Rinke, Derek S Lundberg, James Han, Jeff L Dangl, Natalia Ivanova, Tanja Woyke, Nikos Kyrpides and Amrita Pati ISME J 2016 10: 269-272; advance online publication, June 9, 2015; 10.1038/ismej.2015.100 Abstract | Full Text Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. 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