Tuesday, November 10, 2015

Nature Methods Application Notes e-UPDATE: 10 November 2015

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10 November 2015 
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FEATURED APPLICATION NOTE
Quantitative analysis tools and correlative imaging applications for N-STORM
www.nikon.com >
Super-resolution techniques have had a significant impact on our understanding of biological processes at the molecular level. However, one of the challenges to their broad utilization has been our limited ability to quantitatively analyze super-resolution images of complex biological tissues. In this Application Note, we highlight recent work by Dudok et al. utilizing Nikon's N-STORM system to develop new correlative imaging methods and quantitative analysis tools to study the mechanism of cannabinoid signaling in the brain.
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DNA library construction using Gibson Assembly®
www.syntheticgenomics.com >
Since its introduction 6 years ago, the Gibson Assembly method has been widely adopted as a preferred cloning method. Here we describe an application of Gibson Assembly beyond routine cloning: assembly in DNA library construction. Advantages of using Gibson Assembly, specifically the SGI-DNA Gibson Assembly HiFi 1 Step kit, in library construction include speed, efficiency, scarless assembly with vector and versatility.
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The Role of Multiplexed Assays in Vaccine Development
www.luminexcorp.com >
Vaccine development is a complex and lengthy process, involving multiple stages. The goal of the first stage is to understand the disease burden and pathogenicity of a disease, including all of the variants of the disease-causing organism, and identify the antigens. Next, the preclinical stage of development begins with antigen characterization and purification, in order to develop vaccine candidates.
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NGS library preparation for balanced, comprehensive methylome coverage from low-input quantities
www.swiftbiosci.com >
Next-generation sequencing (NGS) of bisulfite-converted DNA to detect methylation status with per-base resolution is currently restricted by the requirement of large amounts of input material. Here we show how the Accel-NGS® Methyl-Seq DNA library kit, with its unique chemistry, enables the construction of high-complexity libraries from 1 ng of input. With this kit, scientists will no longer be bforced to sacrifice library quality when using low quantities of starting material.
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Automated live cell imaging of cell migration across a microfluidic-controlled chemoattractant gradient
www.millipore.com >
The quantification of cell-migration behavior in response to gradients is critical for understanding cellular movement and development. The CellASIC® ONIX microfluidic platform offers a microfluidic gradient plate to enable precision-controlled chemoattractant diffusion across perfusion barriers, enabling a quantitatively defined diffusion gradient stable enough for long-term, live cell analysis. Using the system, we studied the effect of a serum gradient on metastatic breast cancer cell migration distance, velocity and degree of chemotaxis.
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MAGNETOFECTION™,the tool of choice to reach high transfection andtransduction efficiency with low toxicity on Primary cells
www.ozbiosciences.com >
Magnetofection is a powerful method for introducing nucleic acids into cells, that successful overcomes the limitations encountered by traditional nucleic acid delivery systems such as low efficiency, toxicity, difficulty to handle. Magnetofection™ has been successfully tested on a broad range of cell lines, hard-to-transfect and primary cells. It is perfect for non-dividing or slowly dividing cells, meaning that the genetic materials can go to the nucleus without cell division.
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Optimized lysis system: ideal for extraction of genomic DNA from different kind of FFPE tissue samples
www.analytik-jena.com >
Analytik Jena's blackPREP FFPE DNA Kit is optimized for DNA extraction from a variety of FFPE (formalin-fixed, paraffin-embedded) tissue sample, e.g. adipose tissue, pancreatic tissue or placenta as starting materials.
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