Wednesday, October 28, 2015

Nature contents: 29 October 2015

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  journal cover  
Nature Volume 526 Issue 7575
 
This Week  
 
 
Editorials  
 
 
 
Power struggle
The UK government's decision to subsidize a nuclear power station while cutting support for renewables is short-sighted.
Burst bubbles
Two medical-technology companies illustrate the ups and downs of innovation.
Ghost story
The problem of abandoned fishing gear and its effects on marine life deserve greater attention.
 
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World View  
 
 
 
Forensic DNA evidence is not infallible
As DNA analysis techniques become more sensitive, we must be careful to reassess the probabilities of error, argues Cynthia M. Cale.
 
Seven Days  
 
 
 
The week in science: 23–29 October 2015
Martian landing-site selected; telescope shuttered in Hawaii; and Hurricane Patricia pounds Mexico.
Research Highlights  
 
 
 
Zoology: Bright light as sex signal | Neuroscience: Alzheimer's clue from spatial test | Astronomy: Red-giant rogue in Andromeda | Materials: Iron skin senses the softest touch | Genomics: Gene regulation predates animals | Disease: Plague is an ancient pathogen | Stem cells: Molecular menu creates neurons | Lab tools: Superconducting sensors warm up | Atmospheric science: Arctic snow is not becoming dirtier
Social Selection
Backlash after Frontiers journals added to list of questionable publishers
 
 

Science Masterclass

The 2015 meeting between Nobel laureates and young researchers in Lindau, Germany cast a spotlight on super-resolution microscopy, as discussed in depth in this Nature Outlook, as well as fields as diverse as memory formation and the Higgs bosons.
 
Access the Outlook free online.
 
Produced with support from: Mars, Incorporated
 
 
News in Focus
 
Malaria vaccine cautiously recommended for use in Africa
World Health Organization advisory committee endorses use of the RTS,S vaccine in small-scale demonstrations.
Ewen Callaway, Amy Maxmen
  Super-fast Antarctic drills ready to hunt for oldest ice
Next-generation machines can penetrate kilometres below surface in days rather than years.
Alexandra Witze
US astronomers stuck in grant-rejection cycle
The plummeting success rates in grant applications in the last decade are linked to flat budgets and more resubmitted proposals.
Chris Cesare
  Massive UK baby study cancelled
Loss prompts rethink about design of future cradle-to-grave studies.
Helen Pearson
Incoming space junk a scientific opportunity
Astronomers prepare to observe an impact off the coast of Sri Lanka.
Traci Watson
  Cancer-fighting viruses win approval
US regulators clear a viral melanoma therapy, paving the way for a promising field with a chequered past.
Heidi Ledford
Features  
 
 
 
Before we drown we may die of thirst
The island nation of Kiribati is one of the world's most vulnerable to rising sea levels. But residents may have to leave well before the ocean claims their homes.
Kenneth R. Weiss
How to make the most of carbon dioxide
Researchers hope to show that using the gas as a raw material could make an impact on climate change.
XiaoZhi Lim
Multimedia  
 
 
Podcast: 29 October 2015
This week, how cancers spread, the hallmarks of bipolar disorder in the brain, and making carbon dioxide useful.
Video: Ultrasonic levitation
Scientists can float objects in mid-air, using just the power of sound. Now, using ultrasonic speakers, they can levitate things with more control than ever before, moving small objects in three dimensions even with the whole array turned upside down. They have also developed virtual 'holograms' to visualise how the shapes made by the sound waves can 'grab' objects.
Correction  
 
 
Correction
 
 
Comment
 
Microbiology: Create a global microbiome effort
Understanding how microbes affect health and the biosphere requires an international initiative, argue Nicole Dubilier, Margaret McFall-Ngai and Liping Zhao.
Nicole Dubilier, Margaret McFall-Ngai, Liping Zhao
Institutions: Revive universities of the Muslim world
To boost science, higher-education institutes must give students a broad education and become meritocratic, say Nidhal Guessoum and Athar Osama.
Nidhal Guessoum, Athar Osama
Books and Arts  
 
 
 
Photography: Sedition in the stores
Laura Spinney extols Robert Doisneau's haunting images of the Paris natural history museum under occupation.
Laura Spinney
Scientific method: Tales of the unexpected
Stuart Firestein relishes Helga Nowotny's study of uncertainty in science and society.
Stuart Firestein
Books in brief
Barbara Kiser reviews five of the week's best science picks.
Barbara Kiser
Correspondence  
 
 
 
China: Engage the public to stop bear trafficking
Zhengrong Yuan, Yingying Han, Qiang Weng
  2015 awards: China Nobel stirs up attack on academies
Xin Miao
Bovine tuberculosis: Badger-cull targets unlikely to reduce TB
Christl A. Donnelly, Rosie Woodroffe
  Genetic gain of function: EU report advises on contentious research
Robin Fears, Volker ter Meulen
Emissions estimates: Make raw emissions data public in China
Dabo Guan, Zhu Liu, Wei Wei
 
 
 
Specials
 
Outlook: Batteries  
 
 
 
Batteries
Brian Owens
  From gadgets to the smart grid
Sujata Gupta
Perspective: The energy-storage revolution
George Crabtree
  Lithium batteries: To the limits of lithium
Eric C. Evarts
Technology: A solid future
Jim Motavalli
  Electrochemistry: Liquid assets
Neil Savage
Recycling: Lazarus batteries
Erica Gies
  Energy storage: Power revolution
Peter Fairley
Batteries: 4 big questions
Katherine Bourzac
 
Sponsor
Sponsor
 
 
Research
 
NEW ONLINE  
 
 
 
Cancer: Organ-seeking vesicles
An analysis reveals that cancer cells remotely prepare distant sites for tumour spread in an organ-specific manner, by deploying organ-seeking extracellular vesicles.
Deep-time evolution of regeneration and preaxial polarity in tetrapod limb development
Salamanders are the only tetrapod that can fully regenerate their limbs and tail, a capacity that might be linked to their unique preaxial mode of limb development; here, data from fossils reveal the existence of preaxial polarity in various amphibians from the Carboniferous and Permian periods, suggesting that salamander-like regeneration is an ancient feature of tetrapods that was subsequently lost at least once in the lineage leading to amniotes.
Fungal pathogen uses sex pheromone receptor for chemotropic sensing of host plant signals
Fungal pathogens reorient hyphal growth towards their plant hosts in response to chemical signals; here, directed growth of the plant pathogen Fusarium oxysporum towards the roots of the tomato plant is shown to be triggered by class III peroxidases secreted by the tomato plant, with the fungal response requiring a sex pheromone receptor.
Epigenetic silencing of TH1-type chemokines shapes tumour immunity and immunotherapy
Treating ovarian cancer in mouse models with inhibitors for the epigenetic regulators EZH2 and DNMT1 increases the expression of the inflammatory chemokines CXCL9 and CXCL10, resulting in enhanced tumour infiltration by effector T cells, and slowed tumour progression.
Crystal structure of the RNA-dependent RNA polymerase from influenza C virus
The X-ray crystal structure of influenza C virus polymerase, captured in a closed, pre-activation confirmation, is solved at 3.9 Å resolution; comparison with previous RNA-bound structures reveals large conformational changes associated with RNA binding and activation, and illustrates the notable flexibility of the influenza virus RNA polymerase.
Autophagy mediates degradation of nuclear lamina
In response to cancer-associated stress, autophagy machinery mediates degradation of nuclear lamina components in mammals, suggesting that cells might degrade nuclear components to prevent tumorigenesis.
Methane storage in flexible metal–organic frameworks with intrinsic thermal management
Two flexible metal-organic frameworks are presented as solid adsorbents for methane that undergo reversible phase transitions at specific methane pressures, enabling greater storage capacities of usable methane than have been achieved previously, while also providing internal heat management of the system.
In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus
This study visualizes the interior of a dsRNA virus using cryo-electron microscopy, revealing the organization of the genome of cytoplasmic polyhedrosis virus together with its transcriptional enzyme complex in both quiescent and transcribing states.
Corrigendum: A basal ichthyosauriform with a short snout from the Lower Triassic of China
Brief Communications Arising  
 
 
 
El Niño and intense tropical cyclones
Il-Ju Moon, Sung-Hun Kim, Chunzai Wang
Jin et al. reply
F.-F. Jin, J. Boucharel, I.-I. Lin
News and Views  
 
 
 
Non-coding RNA: Antibiotic tricks a switch
Thomas Hermann
Immunology: Caspase target drives pyroptosis
Petr Broz
Photonics: Random sudoku light
Toni Eichelkraut, Alexander Szameit
 

EPIK™ miRNA RT-qPCR Panel Assays 
Novel priming strategy for unparalleled sensitivity, specificity and time to results
Plant biology: Pigments on the move
Diane C. Bassham
 
Ecology: Foraging further
Jennifer R. Gardiner
Chemical biology: Protein modification in a trice
Heather Maynard
 
Palaeoanthropology: Homo sapiens in China 80,000 years ago
Robin Dennell
Quantum physics: Death by experiment for local realism
Howard Wiseman
 
50 & 100 Years Ago
Articles  
 
 
 
Cleavage of GSDMD by inflammatory caspases determines pyroptotic cell death
CRISPR-Cas9 genome-editing screens identify gasdermin D as a substrate for inflammatory caspases, and its N-terminal cleavage fragment, as well as the equivalent regions in other gasdermins, is shown to be capable of inducing pyroptosis.
Jianjin Shi, Yue Zhao, Kun Wang et al.
Caspase-11 cleaves gasdermin D for non-canonical inflammasome signalling
Gasdermin D is identified as the required substrate for pyroptosis, mediating caspase-11 function in the non-canonical inflammasome pathway; the cleaved N-terminal domain is shown to trigger pyroptosis.
Nobuhiko Kayagaki, Irma B. Stowe, Bettina L. Lee et al.
Projections from neocortex mediate top-down control of memory retrieval
Here, a sparse neuronal projection from a part of the prefrontal cortex, the anterior cingulate, to the hippocampus is identified that, when activated, can elicit memory retrieval in mice.
Priyamvada Rajasethupathy, Sethuraman Sankaran, James H. Marshel et al.
Selective small-molecule inhibition of an RNA structural element
A novel drug, ribocil, is shown to mimic the binding of a natural ligand to a bacterial riboflavin riboswitch (a non-coding stretch of messenger RNA whose structure is affected by a ligand—usually one related to the function of the protein encoded by the messenger RNA) to cause inhibition of bacterial growth; the ability to target an RNA structural element with a synthetic small molecule may expand our view of the target space susceptible to therapeutic intervention.
John A. Howe, Hao Wang, Thierry O. Fischmann et al.
Letters  
 
 
 
Telomerase activation by genomic rearrangements in high-risk neuroblastoma
Activation of telomere maintenance mechanisms—caused by novel somatic rearrangements of TERT, by MYCN amplification, or ATRX mutations—is a hallmark of high-risk neuroblastomas.
Martin Peifer, Falk Hertwig, Frederik Roels et al.
Thalamic control of sensory selection in divided attention
The authors trained mice to attend to or suppress vision based on behavioral context and show, through novel and established techniques, that changes in visual gain rely on tunable feedforward inhibition of visual thalamus via innervating thalamic reticular neurons; these findings introduce a subcortical model of attention in which modality-specific thalamic reticular subnetworks mediate top-down and context-dependent control of sensory selection.
Ralf D. Wimmer, L. Ian Schmitt, Thomas J. Davidson et al.
The earliest unequivocally modern humans in southern China
A collection of 47 unequivocally modern human teeth from a cave in southern China shows that modern humans were in the region at least 80,000 years ago, and possibly as long as 120,000 years ago, which is twice as long as the earliest known modern humans in Europe; the population exhibited more derived features than contemporaneous hominins in northern and central China, adding to the complexity of the human story.
Wu Liu, María Martinón-Torres, Yan-jun Cai et al.
Crystal structure of the 500-kDa yeast acetyl-CoA carboxylase holoenzyme dimer
Acetyl-CoA carboxylases (ACCs) are large, multi-domain enzymes with crucial functions in fatty acid metabolism and are potential drug targets; here the X-ray crystal structure of the full-length, 500-kDa holoenzyme dimer of the ACC from Saccharomyces cerevisiae is solved and reveals an organization quite different from that of other biotin-dependent carboxylases.
Jia Wei, Liang Tong
Organometallic palladium reagents for cysteine bioconjugation
Palladium(ii) complexes can be used in efficient and highly selective cysteine conjugation reactions that are rapid and robust, and the resulting aryl bioconjugates are stable towards acids, bases, oxidants and external thiol nucleophiles.
Ekaterina V. Vinogradova, Chi Zhang, Alexander M. Spokoyny et al.
Decadal slowdown of a land-terminating sector of the Greenland Ice Sheet despite warming
Whether or not an increase in meltwater will make ice sheets move more quickly has been contentious, because water lubricates the ice–rock interface and speeds up the ice, but also stimulates the development of efficient drainage; now, a long-term and large-area study of a land-terminating margin of the Greenland Ice Sheet finds that more meltwater does not equal higher velocity.
Andrew J. Tedstone, Peter W. Nienow, Noel Gourmelen et al.
Bacteriocin production augments niche competition by enterococci in the mammalian gastrointestinal tract
The authors develop a mouse model of Enterococcus faecalis colonization to show that enterococci harbouring the bacteriocin-expressing plasmid pPD1 replace indigenous enterococci and have the ability to transfer the plasmid to other enterococci, which enhances the stability of the bacteriocin-expressing bacteria in the gut; this result suggests a therapeutic approach that leverages niche-specificity to eliminate antibiotic-resistant bacteria from infected individuals.
Sushma Kommineni, Daniel J. Bretl, Vy Lam et al.
Abundant molecular oxygen in the coma of comet 67P/Churyumov–Gerasimenko
In situ measurement of O2 in the coma of comet 67P/Churyumov–Gerasimenko shows local abundances ranging from one per cent to ten per cent relative to H2O; the spatial and temporal uniformity of the O2/H2O ratio suggests that primordial O2 was incorporated into the nucleus during the comet's formation.
A. Bieler, K. Altwegg, H. Balsiger et al.
Yap-dependent reprogramming of Lgr5+ stem cells drives intestinal regeneration and cancer
This study finds that the Hippo pathway is essential for gut epithelial regeneration and tumour initiation; the Hippo component Yap holds off differentiation of intestinal stem cells to Paneth cells to promote a survival and self-renewal regenerative program through activation of the Egfr pathway.
Alex Gregorieff, Yu Liu, Mohammad R. Inanlou et al.
CMT2D neuropathy is linked to the neomorphic binding activity of glycyl-tRNA synthetase
Charcot–Marie–Tooth diseases are hereditary peripheral neuropathies for which there are currently no effective therapies; here the type 2D subtype of these diseases is shown to be caused by mutations impeding a signalling pathway necessary for motor neuron survival.
Weiwei He, Ge Bai, Huihao Zhou et al.
Loophole-free Bell inequality violation using electron spins separated by 1.3 kilometres
A Bell experiment that is 'loophole' free—leaving no room for explanations based on experimental imperfections—reveals a statistically significant conflict with local realism
B. Hensen, H. Bernien, A. E. Dréau et al.
CORRIGENDUM  
 
 
 
Corrigendum: Cleavage of CAD inhibitor in CAD activation and DNA degradation during apoptosis
Hideki Sakahira, Masato Enari, Shigekazu Nagata
Errata  
 
 
 
Erratum: Mechanism of phospho-ubiquitin-induced PARKIN activation
Tobias Wauer, Michal Simicek, Alexander Schubert et al.
Erratum: IgG1 protects against renal disease in a mouse model of cryoglobulinaemia
Richard T. Strait, Monica T. Posgai, Ashley Mahler et al.
 
 
 
Online-only and open access, npj Primary Care Respiratory Medicine is the only fully-indexed scientific journal devoted to the management of respiratory diseases in primary care. The journal has an Impact Factor of 2.504.
 
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Careers & Jobs
 
Feature  
 
 
 
Networking: Hello, stranger
Emily Sohn
Q&AS  
 
 
 
Turning point: Alaina Levine
Julie Gould
Futures  
 
 
Staff meeting, as seen by the spam filter
Message intercepted.
Alex Shvartsman
 
 
 
 
 

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