TABLE OF CONTENTS
| | | | Volume 9, Issue 1 (January 2015) | | In this issue Original Articles Short Communications
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| | | | Original Articles | Top | | Modulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice OPENJingjing Wang, Huang Tang, Chenhong Zhang, Yufeng Zhao, Muriel Derrien, Emilie Rocher, Johan ET van-Hylckama Vlieg, Katherine Strissel, Liping Zhao, Martin Obin and Jian Shen ISME J 2015 9: 1-15; advance online publication, June 17, 2014; 10.1038/ismej.2014.99 Abstract | Full Text | | | | From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalistsMaría Gomariz, Manuel Martínez-García, Fernando Santos, Francisco Rodriguez, Salvador Capella-Gutiérrez, Toni Gabaldón, Ramon Rosselló-Móra, Inmaculada Meseguer and Josefa Antón ISME J 2015 9: 16-31; advance online publication, June 13, 2014; 10.1038/ismej.2014.95 Abstract | Full Text | | | | Growth form defines physiological photoprotective capacity in intertidal benthic diatomsAlexandre Barnett, Vona Méléder, Lander Blommaert, Bernard Lepetit, Pierre Gaudin, Wim Vyverman, Koen Sabbe, Christine Dupuy and Johann Lavaud ISME J 2015 9: 32-45; advance online publication, July 8, 2014; 10.1038/ismej.2014.105 Abstract | Full Text | | | | Early colonizing Escherichia coli elicits remodeling of rat colonic epithelium shifting toward a new homeostatic stateJulie Tomas, Julie Reygner, Camille Mayeur, Robert Ducroc, Stephan Bouet, Chantal Bridonneau, Jean-Baptiste Cavin, Muriel Thomas, Philippe Langella and Claire Cherbuy ISME J 2015 9: 46-58; advance online publication, July 11, 2014; 10.1038/ismej.2014.111 Abstract | Full Text | | | | Water fleas require microbiota for survival, growth and reproductionMarilou P Sison-Mangus, Alexandra A Mushegian and Dieter Ebert ISME J 2015 9: 59-67; advance online publication, July 15, 2014; 10.1038/ismej.2014.116 Abstract | Full Text | | | | Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolutionMikhail Tikhonov, Robert W Leach and Ned S Wingreen ISME J 2015 9: 68-80; advance online publication, July 11, 2014; 10.1038/ismej.2014.117 Abstract | Full Text | | | | High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperationDawei Ren, Jonas S Madsen, Søren J Sørensen and Mette Burmølle ISME J 2015 9: 81-89; advance online publication, June 17, 2014; 10.1038/ismej.2014.96 Abstract | Full Text | | | | A single genus in the gut microbiome reflects host preference and specificity OPENA Murat Eren, Mitchell L Sogin, Hilary G Morrison, Joseph H Vineis, Jenny C Fisher, Ryan J Newton and Sandra L McLellan ISME J 2015 9: 90-100; advance online publication, June 17, 2014; 10.1038/ismej.2014.97 Abstract | Full Text | | | | Life on the edge: functional genomic response of Ignicoccus hospitalis to the presence of Nanoarchaeum equitansRichard J Giannone, Louie L Wurch, Thomas Heimerl, Stanton Martin, Zamin Yang, Harald Huber, Reinhard Rachel, Robert L Hettich and Mircea Podar ISME J 2015 9: 101-114; advance online publication, July 11, 2014; 10.1038/ismej.2014.112 Abstract | Full Text | | | | Quorum sensing enhancement of the stress response promotes resistance to quorum quenching and prevents social cheatingRodolfo García-Contreras, Leslie Nuñez-López, Ricardo Jasso-Chávez, Brian W Kwan, Javier A Belmont, Adrián Rangel-Vega, Toshinari Maeda and Thomas K Wood ISME J 2015 9: 115-125; advance online publication, June 17, 2014; 10.1038/ismej.2014.98 Abstract | Full Text | | | | The ambrosia symbiosis is specific in some species and promiscuous in others: evidence from community pyrosequencingMartin Kostovcik, Craig C Bateman, Miroslav Kolarik, Lukasz L Stelinski, Bjarte H Jordal and Jiri Hulcr ISME J 2015 9: 126-138; advance online publication, August 1, 2014; 10.1038/ismej.2014.115 Abstract | Full Text | | | | Adhesion as a weapon in microbial competitionJonas Schluter, Carey D Nadell, Bonnie L Bassler and Kevin R Foster ISME J 2015 9: 139-149; advance online publication, October 7, 2014; 10.1038/ismej.2014.174 Abstract | Full Text | | | | Genome-wide analysis of Sphingomonas wittichii RW1 behaviour during inoculation and growth in contaminated sand OPENSilvia K Moreno-Forero and Jan Roelof van der Meer ISME J 2015 9: 150-165; advance online publication, June 17, 2014; 10.1038/ismej.2014.101 Abstract | Full Text | | | | Satellite remote sensing data can be used to model marine microbial metabolite turnover OPENPeter E Larsen, Nicole Scott, Anton F Post, Dawn Field, Rob Knight, Yuki Hamada and Jack A Gilbert ISME J 2015 9: 166-179; advance online publication, July 29, 2014; 10.1038/ismej.2014.107 Abstract | Full Text | | | | Elevated temperature alters proteomic responses of individual organisms within a biofilm communityAnnika C Mosier, Zhou Li, Brian C Thomas, Robert L Hettich, Chongle Pan and Jillian F Banfield ISME J 2015 9: 180-194; advance online publication, July 22, 2014; 10.1038/ismej.2014.113 Abstract | Full Text | | | | Bacterial metabolism of methylated amines and identification of novel methylotrophs in Movile CaveDaniela Wischer, Deepak Kumaresan, Antonia Johnston, Myriam El Khawand, Jason Stephenson, Alexandra M Hillebrand-Voiculescu, Yin Chen and J Colin Murrell ISME J 2015 9: 195-206; advance online publication, July 22, 2014; 10.1038/ismej.2014.102 Abstract | Full Text | | | | Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecologyMolly K Gibson, Kevin J Forsberg and Gautam Dantas ISME J 2015 9: 207-216; advance online publication, July 8, 2014; 10.1038/ismej.2014.106 Abstract | Full Text | | | | Predominant pathogen competition and core microbiota divergence in chronic airway infectionGeraint B Rogers, Christopher J van der Gast and David J Serisier ISME J 2015 9: 217-225; advance online publication, July 18, 2014; 10.1038/ismej.2014.124 Abstract | Full Text | | | | Microbial dormancy improves development and experimental validation of ecosystem modelGangsheng Wang, Sindhu Jagadamma, Melanie A Mayes, Christopher W Schadt, J Megan Steinweg, Lianhong Gu and Wilfred M Post ISME J 2015 9: 226-237; advance online publication, July 11, 2014; 10.1038/ismej.2014.120 Abstract | Full Text | | | | Iron deficiency increases growth and nitrogen-fixation rates of phosphorus-deficient marine cyanobacteriaNathan S Garcia, Feixue Fu, Peter N Sedwick and David A Hutchins ISME J 2015 9: 238-245; advance online publication, June 27, 2014; 10.1038/ismej.2014.104 Abstract | Full Text | | | | Comparative analysis of the interaction between habitat and growth form in diatomsTeofil Nakov, Matt Ashworth and Edward C Theriot ISME J 2015 9: 246-255; advance online publication, July 1, 2014; 10.1038/ismej.2014.108 Abstract | Full Text | | | | The niche of an invasive marine microbe in a subtropical freshwater impoundmentK David Hambright, Jessica E Beyer, James D Easton, Richard M Zamor, Anne C Easton and Thayer C Hallidayschult ISME J 2015 9: 256-264; advance online publication, June 20, 2014; 10.1038/ismej.2014.103 Abstract | Full Text | | Short Communications | Top | | Bacteria on leaves: a previously unrecognised source of N2O in grazed pasturesSaman Bowatte, Paul CD Newton, Shona Brock, Phil Theobald and Dongwen Luo ISME J 2015 9: 265-267; advance online publication, July 11, 2014; 10.1038/ismej.2014.118 Abstract | Full Text | | | | The subgingival microbiome of clinically healthy current and never smokers OPENMatthew R Mason, Philip M Preshaw, Haikady N Nagaraja, Shareef M Dabdoub, Anis Rahman and Purnima S Kumar ISME J 2015 9: 268-272; advance online publication, July 11, 2014; 10.1038/ismej.2014.114 Abstract | Full Text | | | | | | | | | | | Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. 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