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The ISME Journal - Table of Contents alert Volume 9 Issue 1

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The ISME Journal

TABLE OF CONTENTS

Volume 9, Issue 1 (January 2015)

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Original Articles
Short Communications

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Original Articles

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Modulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice OPEN

Jingjing Wang, Huang Tang, Chenhong Zhang, Yufeng Zhao, Muriel Derrien, Emilie Rocher, Johan ET van-Hylckama Vlieg, Katherine Strissel, Liping Zhao, Martin Obin and Jian Shen

ISME J 2015 9: 1-15; advance online publication, June 17, 2014; 10.1038/ismej.2014.99

Abstract | Full Text

From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists

María Gomariz, Manuel Martínez-García, Fernando Santos, Francisco Rodriguez, Salvador Capella-Gutiérrez, Toni Gabaldón, Ramon Rosselló-Móra, Inmaculada Meseguer and Josefa Antón

ISME J 2015 9: 16-31; advance online publication, June 13, 2014; 10.1038/ismej.2014.95

Abstract | Full Text

Growth form defines physiological photoprotective capacity in intertidal benthic diatoms

Alexandre Barnett, Vona Méléder, Lander Blommaert, Bernard Lepetit, Pierre Gaudin, Wim Vyverman, Koen Sabbe, Christine Dupuy and Johann Lavaud

ISME J 2015 9: 32-45; advance online publication, July 8, 2014; 10.1038/ismej.2014.105

Abstract | Full Text

Early colonizing Escherichia coli elicits remodeling of rat colonic epithelium shifting toward a new homeostatic state

Julie Tomas, Julie Reygner, Camille Mayeur, Robert Ducroc, Stephan Bouet, Chantal Bridonneau, Jean-Baptiste Cavin, Muriel Thomas, Philippe Langella and Claire Cherbuy

ISME J 2015 9: 46-58; advance online publication, July 11, 2014; 10.1038/ismej.2014.111

Abstract | Full Text

Water fleas require microbiota for survival, growth and reproduction

Marilou P Sison-Mangus, Alexandra A Mushegian and Dieter Ebert

ISME J 2015 9: 59-67; advance online publication, July 15, 2014; 10.1038/ismej.2014.116

Abstract | Full Text

Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution

Mikhail Tikhonov, Robert W Leach and Ned S Wingreen

ISME J 2015 9: 68-80; advance online publication, July 11, 2014; 10.1038/ismej.2014.117

Abstract | Full Text

High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation

Dawei Ren, Jonas S Madsen, Søren J Sørensen and Mette Burmølle

ISME J 2015 9: 81-89; advance online publication, June 17, 2014; 10.1038/ismej.2014.96

Abstract | Full Text

A single genus in the gut microbiome reflects host preference and specificity OPEN

A Murat Eren, Mitchell L Sogin, Hilary G Morrison, Joseph H Vineis, Jenny C Fisher, Ryan J Newton and Sandra L McLellan

ISME J 2015 9: 90-100; advance online publication, June 17, 2014; 10.1038/ismej.2014.97

Abstract | Full Text

Life on the edge: functional genomic response of Ignicoccus hospitalis to the presence of Nanoarchaeum equitans

Richard J Giannone, Louie L Wurch, Thomas Heimerl, Stanton Martin, Zamin Yang, Harald Huber, Reinhard Rachel, Robert L Hettich and Mircea Podar

ISME J 2015 9: 101-114; advance online publication, July 11, 2014; 10.1038/ismej.2014.112

Abstract | Full Text

Quorum sensing enhancement of the stress response promotes resistance to quorum quenching and prevents social cheating

Rodolfo García-Contreras, Leslie Nuñez-López, Ricardo Jasso-Chávez, Brian W Kwan, Javier A Belmont, Adrián Rangel-Vega, Toshinari Maeda and Thomas K Wood

ISME J 2015 9: 115-125; advance online publication, June 17, 2014; 10.1038/ismej.2014.98

Abstract | Full Text

The ambrosia symbiosis is specific in some species and promiscuous in others: evidence from community pyrosequencing

Martin Kostovcik, Craig C Bateman, Miroslav Kolarik, Lukasz L Stelinski, Bjarte H Jordal and Jiri Hulcr

ISME J 2015 9: 126-138; advance online publication, August 1, 2014; 10.1038/ismej.2014.115

Abstract | Full Text

Adhesion as a weapon in microbial competition

Jonas Schluter, Carey D Nadell, Bonnie L Bassler and Kevin R Foster

ISME J 2015 9: 139-149; advance online publication, October 7, 2014; 10.1038/ismej.2014.174

Abstract | Full Text

Genome-wide analysis of Sphingomonas wittichii RW1 behaviour during inoculation and growth in contaminated sand OPEN

Silvia K Moreno-Forero and Jan Roelof van der Meer

ISME J 2015 9: 150-165; advance online publication, June 17, 2014; 10.1038/ismej.2014.101

Abstract | Full Text

Satellite remote sensing data can be used to model marine microbial metabolite turnover OPEN

Peter E Larsen, Nicole Scott, Anton F Post, Dawn Field, Rob Knight, Yuki Hamada and Jack A Gilbert

ISME J 2015 9: 166-179; advance online publication, July 29, 2014; 10.1038/ismej.2014.107

Abstract | Full Text

Elevated temperature alters proteomic responses of individual organisms within a biofilm community

Annika C Mosier, Zhou Li, Brian C Thomas, Robert L Hettich, Chongle Pan and Jillian F Banfield

ISME J 2015 9: 180-194; advance online publication, July 22, 2014; 10.1038/ismej.2014.113

Abstract | Full Text

Bacterial metabolism of methylated amines and identification of novel methylotrophs in Movile Cave

Daniela Wischer, Deepak Kumaresan, Antonia Johnston, Myriam El Khawand, Jason Stephenson, Alexandra M Hillebrand-Voiculescu, Yin Chen and J Colin Murrell

ISME J 2015 9: 195-206; advance online publication, July 22, 2014; 10.1038/ismej.2014.102

Abstract | Full Text

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology

Molly K Gibson, Kevin J Forsberg and Gautam Dantas

ISME J 2015 9: 207-216; advance online publication, July 8, 2014; 10.1038/ismej.2014.106

Abstract | Full Text

Predominant pathogen competition and core microbiota divergence in chronic airway infection

Geraint B Rogers, Christopher J van der Gast and David J Serisier

ISME J 2015 9: 217-225; advance online publication, July 18, 2014; 10.1038/ismej.2014.124

Abstract | Full Text

Microbial dormancy improves development and experimental validation of ecosystem model

Gangsheng Wang, Sindhu Jagadamma, Melanie A Mayes, Christopher W Schadt, J Megan Steinweg, Lianhong Gu and Wilfred M Post

ISME J 2015 9: 226-237; advance online publication, July 11, 2014; 10.1038/ismej.2014.120

Abstract | Full Text

Iron deficiency increases growth and nitrogen-fixation rates of phosphorus-deficient marine cyanobacteria

Nathan S Garcia, Feixue Fu, Peter N Sedwick and David A Hutchins

ISME J 2015 9: 238-245; advance online publication, June 27, 2014; 10.1038/ismej.2014.104

Abstract | Full Text

Comparative analysis of the interaction between habitat and growth form in diatoms

Teofil Nakov, Matt Ashworth and Edward C Theriot

ISME J 2015 9: 246-255; advance online publication, July 1, 2014; 10.1038/ismej.2014.108

Abstract | Full Text

The niche of an invasive marine microbe in a subtropical freshwater impoundment

K David Hambright, Jessica E Beyer, James D Easton, Richard M Zamor, Anne C Easton and Thayer C Hallidayschult

ISME J 2015 9: 256-264; advance online publication, June 20, 2014; 10.1038/ismej.2014.103

Abstract | Full Text

Short Communications

Top

Bacteria on leaves: a previously unrecognised source of N2O in grazed pastures

Saman Bowatte, Paul CD Newton, Shona Brock, Phil Theobald and Dongwen Luo

ISME J 2015 9: 265-267; advance online publication, July 11, 2014; 10.1038/ismej.2014.118

Abstract | Full Text

The subgingival microbiome of clinically healthy current and never smokers OPEN

Matthew R Mason, Philip M Preshaw, Haikady N Nagaraja, Shareef M Dabdoub, Anis Rahman and Purnima S Kumar

ISME J 2015 9: 268-272; advance online publication, July 11, 2014; 10.1038/ismej.2014.114

Abstract | Full Text

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