Tuesday, April 2, 2013

EMBO Reports - Table of Contents alert Volume 14 Issue 4, pp 293 - 394


TABLE OF CONTENTS

April 2013 | Volume 14, Issue 4

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Science & Society
Reviews
Scientific Reports

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Please take a look at this review that recently appeared in EMBO reports:

Non-autophagic roles of autophagy-related proteins
 

Upfront

Top

Editorial

The long and winding helix

Molecular biology celebrates its diamond jubilee this month, the 60th anniversary of the publication of Watson and Crick's seminal paper on the structure of DNA. It's an appropriate moment to ask how far the subject has come, and where we are headed.

Howy Jacobs

EMBO reports (2013), 14, 293; 10.1038/embor.2013.31

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Published online: 02 April 2013

Subject Categories: Philosophy & History of Science

Opinion

Biopedagogy

The world is changing fast and teachers are struggling to familiarize children and young people with the norms and values of society. Biopedagogy—the biology behind pedagogy approaches—might provide some insights and guidance.

Ladislav Kováč

EMBO reports (2013), 14, 294; 10.1038/embor.2013.18

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Published online: 05 March 2013

Subject Categories: Societal Issues & Politics

Hot off the Press

A RING finger to wed TCF and β-catenin

In this issue of EMBO reports, Waterman and colleagues identify RNF14 as a new enhancer of the Wnt-dependent transcriptional outputs that acts at the level of the TCF/LEF–β-catenin complex.

Claudio Cantù, Tomas Valenta and Konrad Basler

EMBO reports (2013), 14, 295 - 296; 10.1038/embor.2013.21

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Published online: 12 March 2013

Subject Categories: Chromatin & Transcription | Signal Transduction

Telomere stability—Wnt it or lose it

Gilson and colleagues show in this issue of EMBO reports that β-catenin directly controls TRF2 expression and that this is critical for telomere protection in cancer cells. These findings and their implications are discussed here.

Kerstin Bauer, Si Tao and K Lenhard Rudolph

EMBO reports (2013), 14, 297 - 298; 10.1038/embor.2013.28

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Published online: 19 March 2013

Subject Categories: Genome Stability & Dynamics | Chromatin & Transcription

Meeting Point

Hijacking nature—new approaches to unravel enzyme mechanisms and engineer improved biocatalysts

The second EMBO conference on 'Catalytic Mechanisms by Biological Systems' took place in October 2012 and covered technologies to improve our mechanistic understanding of enzymes, as well as the design of robust biocatalysts.

Ivan Campeotto and Carlos G Acevedo-Rocha

EMBO reports (2013), 14, 299 - 301; 10.1038/embor.2013.26

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Published online: 12 March 2013

Subject Categories: Molecular Evolution | Proteins | Structural Biology

Biggest challenges in bioinformatics

The third Heidelberg Unseminars in Bioinformatics (HUB) was held in October at Heidelberg University in Germany. HUB brought together around 40 bioinformaticians from academia and industry to discuss the ‘Biggest Challenges in Bioinformatics’ in a ‘World Café’ style event.

Jonathan C Fuller, Pierre Khoueiry, Holger Dinkel, Kristoffer Forslund, Alexandros Stamatakis, Joseph Barry, Aidan Budd, Theodoros G Soldatos, Katja Linssen, Abdul Mateen Rajput and HUB Participants: 

EMBO reports (2013), 14, 302 - 304; 10.1038/embor.2013.34

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Published online: 15 March 2013

Subject Categories: Genomic & Computational Biology

Science & Society

Top

Spinning plates and juggling balls

A PhD thesis is a project with an established goal and a deadline. As such, the tools, strategies and insight of professional project management can be used effectively to improve both research success and personal well-being.

Richard Alun Williams

EMBO reports (2013), 14, 305 - 309; 10.1038/embor.2013.17

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Published online: 05 March 2013

Subject Categories: Scientific Training & Careers

Rethinking the life sciences

The life sciences are at loggerheads with society and neither much trusts the other. To unleash the full potential of molecular life science, a new contract with society and more organized ways of doing research are needed.

Tsjalling Swierstra, Niki Vermeulen, Johan Braeckman and Roel van Driel

EMBO reports (2013), 14, 310 - 314; 10.1038/embor.2013.30

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Published online: 19 March 2013

Subject Categories: Science Policy & Funding | Societal Issues & Politics

Brain drain, brain gain or brain sharing?

Scientific migration has long been seen in terms of brain drain and brain gain. Recent studies show that the reality is more complex and that even exporters of skilled scientists gain in the long term.

Philip Hunter

EMBO reports (2013), 14, 315 - 318; 10.1038/embor.2013.33

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Published online: 15 March 2013

Subject Categories: Scientific Training & Careers

Reviews

Top

The dynamics of gut-associated microbial communities during inflammation

Intestinal inflammation is associated with alterations of the microbiota and outgrowth of potentially harmful bacterial species. How these changes in microbial community structure occur is discussed here, highlighting the role of electron acceptors in feeding facultative anaerobic bacteria.

Sebastian E Winter, Christopher A Lopez and Andreas J Bäumler

EMBO reports (2013), 14, 319 - 327; 10.1038/embor.2013.27

Abstract | Full text | PDF

Published online: 12 March 2013

Subject Categories: Microbiology & Pathogens | Immunology

Programming cancer cells for high expression levels of Mcl1

The pro-survival members of the Bcl2 family have been recognized for their ability to save cancer cells from undergoing apoptosis. This review discusses recent progress in understanding the complex biology of one of those proteins, Mcl1, the multiple mechanisms available for re-programming Mcl1 expression by cancer cells, and how this knowledge can be exploited for therapeutic applications.

Franziska Ertel, Mai Nguyen, Anne Roulston and Gordon C Shore

EMBO reports (2013), 14, 328 - 336; 10.1038/embor.2013.20

Abstract | Full text | PDF

Published online: 12 March 2013

Subject Categories: Differentiation & Death | Molecular Biology of Disease

Breathing-in epigenetic change with vitamin C

Vitamin C maintains the activity of iron and α-ketoglutarate-dependent dioxygenases. This review discusses recent insight into the roles of such dioxygenases in reprogramming, epigenetic regulation and stem cell differentiation and points out that dioxygenase function might be influenced by the available levels of vitamin C.

Asun Monfort and Anton Wutz

EMBO reports (2013), 14, 337 - 346; 10.1038/embor.2013.29

Abstract | Full text | PDF

Published online: 15 March 2013

Subject Categories: Chromatin & Transcription | Cellular Metabolism | Differentiation & Death

Scientific Reports

Top

Ring Finger Protein 14 is a new regulator of TCF/β-catenin-mediated transcription and colon cancer cell survival

This report identifies RNF14 as a new binding partner of TCF/LEF transcription factors that positively regulates Wnt signalling in human cancer cells and in an in vivo zebra fish model.

Beibei Wu, Sarah Piloto, Weihua Zeng, Nate P Hoverter, Thomas F Schilling and Marian L Waterman

EMBO reports (2013), 14, 347 - 355; 10.1038/embor.2013.19

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 01 March 2013

Subject Categories: Signal Transduction | Chromatin & Transcription

Telomere protection and TRF2 expression are enhanced by the canonical Wnt signalling pathway

This study indicates that TRF2 is a direct target of Wnt/β-catenin signalling in normal and cancer cells, and shows that β-catenin-controlled TRF2 expression is crucial for telomere protection in cancer cells.

Irmina Diala, Nicole Wagner, Frédérique Magdinier, Marina Shkreli, Maria Sirakov, Serge Bauwens, Caroline Schluth-Bolard, Thomas Simonet, Valérie M Renault, Jing Ye, Abdelnnadir Djerbi, Pascal Pineau, Jinkuk Choi, Steven Artandi, Anne Dejean, Michelina Plateroti and Eric Gilson

EMBO reports (2013), 14, 356 - 363; 10.1038/embor.2013.16

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 22 February 2013

Subject Categories: Genome Stability & Dynamics

Beclin-1 is required for chromosome congression and proper outer kinetochore assembly

Beclin-1 has a new role independent of the PI3K-III complex and autophagy. Loss of Beclin-1 reduces outer kinetochore proteins and causes severe problems in chromosome congression, and its interaction with Zwint-1 promotes kinetochore–microtubule interactions.

Stéphane Frémont, Annabelle Gérard, Marie Galloux, Katy Janvier, Roger E Karess and Clarisse Berlioz-Torrent

EMBO reports (2013), 14, 364 - 372; 10.1038/embor.2013.23

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 12 March 2013

Subject Categories: Cell Cycle | Genome Stability & Dynamics

Ubiquilin4 is an adaptor protein that recruits Ubiquilin1 to the autophagy machinery

Ubiquilins are ubiquitin-binding proteins involved in protein degradation and implicated in neurodegenerative disease. Ubqln1 regulates autophagosome maturation, and this study reports that Ubqln4 is essential in this process, as it recruits Ubqln1 to LC3.

Dong Yun Lee, David Arnott and Eric J Brown

EMBO reports (2013), 14, 373 - 381; 10.1038/embor.2013.22

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 05 March 2013

Subject Categories: Membranes & Transport | Proteins

ORE1 balances leaf senescence against maintenance by antagonizing G2-like-mediated transcription

Transcription factor ORE1 is a key regulator of senescence in Arabidopsis thaliana. Here, it is shown to also inhibit the function of Golden2-like transcription factors, which antagonize senescence, revealing a new mechanism of ORE1-mediated senescence control.

Mamoona Rauf, Muhammad Arif, Hakan Dortay, Lilian P Matallana-Ramírez, Mark T Waters, Hong Gil Nam, Pyung-Ok Lim, Bernd Mueller-Roeber and Salma Balazadeh

EMBO reports (2013), 14, 382 - 388; 10.1038/embor.2013.24

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 05 March 2013

Subject Categories: Cell Cycle | Plant Biology

Physiological release of endogenous tau is stimulated by neuronal activity  EMBO Open

This report provides evidence that stimulation of neuronal activity, or AMPA receptor activation, induces tau release from cortical neurons via a calcium-dependent mechanism. Dysregulation of this process could lead to the spread of tau pathology in disease.

Amy M Pooler, Emma C Phillips, Dawn H W Lau, Wendy Noble and Diane P Hanger

EMBO reports (2013), 14, 389 - 394; 10.1038/embor.2013.15

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 15 February 2013

Subject Categories: Membranes & Transport | Neuroscience | Molecular Biology of Disease

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