The ISME Journal - Table of Contents alert Volume 6 Issue 7

TABLE OF CONTENTS Volume 6, Issue 7 (July 2012) In this issue Commentaries Original Articles Short Communications Also new AOP Sign up for e-alerts Recommend to your library Web feed Subscribe Advertisement Follow ISME & ISMEJ on Facebook  for access to news, comments and articles make it a place to share information with others interested in the field    Commentaries Top Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys Jeffrey J Werner, Dennis Zhou, J Gregory Caporaso, Rob Knight and Largus T Angenent ISME J 2012 6: 1273-1276; advance online publication, December 15, 2011; 10.1038/ismej.2011.186 Full Text Secondary structure information does not improve OTU assignment for partial 16s rRNA sequences Xiaoyu Wang, Yunpeng Cai, Yijun Sun, Rob Knight and Volker Mai ISME J 2012 6: 1277-1280; advance online publication, December 15, 2011; 10.1038/ismej.2011.187 Full Text Original Articles Top MICROBIAL POPULATION AND COMMUNITY ECOLOGY Geographic delineations of yeast communities and populations associated with vines and wines in New Zealand Velimir Gayevskiy and Matthew R Goddard ISME J 2012 6: 1281-1290; advance online publication, December 22, 2011; 10.1038/ismej.2011.195 Abstract | Full Text MICROBE-MICROBE AND MICROBE-HOST INTERACTIONS Coral-associated marine fungi form novel lineages and heterogeneous assemblages Anthony S Amend, Daniel J Barshis and Thomas A Oliver ISME J 2012 6: 1291-1301; advance online publication, December 22, 2011; 10.1038/ismej.2011.193 Abstract | Full Text Bacteroidales ectosymbionts of gut flagellates shape the nitrogen-fixing community in dry-wood termites Mahesh S Desai and Andreas Brune ISME J 2012 6: 1302-1313; advance online publication, December 22, 2011; 10.1038/ismej.2011.194 Abstract | Full Text A single-cell view of ammonium assimilation in coral–dinoflagellate symbiosis Mathieu Pernice, Anders Meibom, Annamieke Van Den Heuvel, Christophe Kopp, Isabelle Domart-Coulon, Ove Hoegh-Guldberg and Sophie Dove ISME J 2012 6: 1314-1324; advance online publication, January 5, 2012; 10.1038/ismej.2011.196 Abstract | Full Text Pseudomonas syringae naturally lacking the canonical type III secretion system are ubiquitous in nonagricultural habitats, are phylogenetically diverse and can be pathogenic Moudjahidou Demba Diallo, Caroline L Monteil, Boris A Vinatzer, Christopher R Clarke, Catherine Glaux, Caroline Guilbaud, Cécile Desbiez and Cindy E Morris ISME J 2012 6: 1325-1335; advance online publication, January 12, 2012; 10.1038/ismej.2011.202 Abstract | Full Text Acyl homoserine lactone-based quorum sensing in a methanogenic archaeon Guishan Zhang, Fan Zhang, Gang Ding, Jie Li, Xiaopeng Guo, Jinxing Zhu, Liguang Zhou, Shichun Cai, Xiaoli Liu, Yuanming Luo, Guifeng Zhang, Wenyuan Shi and Xiuzhu Dong ISME J 2012 6: 1336-1344; advance online publication, January 12, 2012; 10.1038/ismej.2011.203 Abstract | Full Text Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice Fabian Staubach, Sven Künzel, Andrea C Baines, Andrew Yee, Beth M McGee, Fredrik Bäckhed, John F Baines and Jill M Johnsen ISME J 2012 6: 1345-1355; advance online publication, January 26, 2012; 10.1038/ismej.2011.204 Abstract | Full Text Proteus mirabilis interkingdom swarming signals attract blow flies Qun Ma, Alicia Fonseca, Wenqi Liu, Andrew T Fields, Meaghan L Pimsler, Aline F Spindola, Aaron M Tarone, Tawni L Crippen, Jeffery K Tomberlin and Thomas K Wood ISME J 2012 6: 1356-1366; advance online publication, January 12, 2012; 10.1038/ismej.2011.210 Abstract | Full Text EVOLUTIONARY GENETICS Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium Ulrike Pfreundt, Lucas J Stal, Björn Voß and Wolfgang R Hess ISME J 2012 6: 1367-1377; advance online publication, January 12, 2012; 10.1038/ismej.2011.199 Abstract | Full Text INTEGRATED GENOMICS AND POST-GENOMICS APPROACHES IN MICROBIAL ECOLOGY Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice Claudia Knief, Nathanaël Delmotte, Samuel Chaffron, Manuel Stark, Gerd Innerebner, Reiner Wassmann, Christian von Mering and Julia A Vorholt ISME J 2012 6: 1378-1390; advance online publication, December 22, 2011; 10.1038/ismej.2011.192 Abstract | Full Text In situ proteo-metabolomics reveals metabolite secretion by the acid mine drainage bio-indicator, Euglena mutabilis David Halter, Florence Goulhen-Chollet, Sébastien Gallien, Corinne Casiot, Jérôme Hamelin, Françoise Gilard, Dimitri Heintz, Christine Schaeffer, Christine Carapito, Alain Van Dorsselaer, Guillaume Tcherkez, Florence Arsène-Ploetze and Philippe N Bertin ISME J 2012 6: 1391-1402; advance online publication, January 12, 2012; 10.1038/ismej.2011.198 Abstract | Full Text Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic Lisa Zeigler Allen, Eric E Allen, Jonathan H Badger, John P McCrow, Ian T Paulsen, Liam DH Elbourne, Mathangi Thiagarajan, Doug B Rusch, Kenneth H Nealson, Shannon J Williamson, J Craig Venter and Andrew E Allen ISME J 2012 6: 1403-1414; advance online publication, January 26, 2012; 10.1038/ismej.2011.201 Abstract | Full Text The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates Erwin G Zoetendal, Jeroen Raes, Bartholomeus van den Bogert, Manimozhiyan Arumugam, Carien CGM Booijink, Freddy J Troost, Peer Bork, Michiel Wels, Willem M de Vos and Michiel Kleerebezem ISME J 2012 6: 1415-1426; advance online publication, January 19, 2012; 10.1038/ismej.2011.212 Abstract | Full Text MICROBIAL ECOLOGY AND FUNCTIONAL DIVERSITY OF NATURAL HABITATS Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis Dagmar Woebken, Luke C Burow, Leslie Prufert-Bebout, Brad M Bebout, Tori M Hoehler, Jennifer Pett-Ridge, Alfred M Spormann, Peter K Weber and Steven W Singer ISME J 2012 6: 1427-1439; advance online publication, January 12, 2012; 10.1038/ismej.2011.200 Abstract | Full Text Short Communications Top MICROBIAL POPULATION AND COMMUNITY ECOLOGY Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences David A W Soergel, Neelendu Dey, Rob Knight and Steven E Brenner ISME J 2012 6: 1440-1444; advance online publication, January 12, 2012; 10.1038/ismej.2011.208 Abstract | Full Text MICROBIAL ECOLOGY AND FUNCTIONAL DIVERSITY OF NATURAL HABITATS First evidence for the existence of pennate diatom viruses Yuji Tomaru, Kensuke Toyoda, Kei Kimura, Naotsugu Hata, Mikihide Yoshida and Keizo Nagasaki ISME J 2012 6: 1445-1448; advance online publication, January 12, 2012; 10.1038/ismej.2011.207 Abstract | Full Text Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. 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