Thursday, September 20, 2018

Nature contents: 20 September 2018

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  journal cover  
Nature Volume 561 Issue 7723
 
This Week  
 
 
Editorial  
 
 
 
Filthy air is a global disgrace
Austrian agency shows how to tackle scientific misconduct
Clever chemistry offers new source of jet fuel
 
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World View  
 
 
 
Reboot undergraduate courses for reproducibility
Katherine Button
Research Highlights  
 
 
 
This issue's Research Highlights
Selections from the scientific literature.
Seven Days  
 
 
 
Lab-death case, harassment rules and Luxembourg’s new space agency
 
 
News in Focus
 
News  
 
 
 
Australia has no climate-change policy — again
Adam Morton
AI helps unlock ‘dark matter’ of bizarre superconductors
Elizabeth Gibney
Huge peer-review study reveals lack of women and non-Westerners
Dalmeet Singh Chawla
The hidden lives of deep-sea creatures caught on camera
Amy Maxmen
Stand back, Aquaman: Harpoon-throwing satellite takes aim at space junk
Alexandra Witze
Features  
 
 
 
A new way to capture the brain’s electrical symphony
Giorgia Guglielmi
 
 
Multimedia  
 
 
Nature Podcast 20 September 2018
This week, the ethics of sucking carbon-dioxide out of the atmosphere and bee swarms under strain.
 
 
Comment
 
Comment  
 
 
 
Don’t deploy negative emissions technologies without ethical analysis
Dominic Lenzi, William F. Lamb, Jérôme Hilaire et al.
Books and Arts  
 
 
 
A history of substance
Michael D. Gordin
Forgotten heroes of the Enigma story
Joanne Baker
Correspondence  
 
 
 
Biodiversity: ideas need time to mature
Jasper Montana
Biodiversity: honour guidelines that reconcile world views
Bernardo B. N. Strassburg
Biodiversity: squabbles don’t obscure the bigger picture
Robert T. Watson
Biodiversity: sparring makes us strong
Rudolf de Groot, Pavan Sukhdev, Mark Gough
 
 
Careers
 
Features  
 
 
 
How female scientists can confront gender bias in the workplace
Kendall Powell
 
 
Futures
 
The 133rd Live Podcast of the Gourmando Resistance

Beth Cato
 
 
Research
 
NEW ONLINE  
 
 
 
Glider soaring via reinforcement learning in the field
A reinforcement learning approach allows a suitably equipped glider to navigate thermal plumes autonomously in an open field.
Gautam Reddy, Jerome Wong-Ng, Antonio Celani et al.
Elimination of senescent cells prevents neurodegeneration in mice
Aggregation of the protein tau is implicated in neurodegenerative diseases in humans. It emerges that eliminating a type of damaged cell that no longer divides can prevent tau-mediated neurodegeneration in mice.
Jay Penney, Li-Huei Tsai
Hydraulic diversity of forests regulates ecosystem resilience during drought
The diversity in the hydraulic traits of trees mediates ecosystem resilience to drought and will probably have an important role in future ecosystem–atmosphere feedback effects.
William R. L. Anderegg, Alexandra G. Konings, Anna T. Trugman et al.
T cells in patients with narcolepsy target self-antigens of hypocretin neurons
The detection of hypocretin-specific autoreactive CD4+ and CD8+ T cells in patients with narcolepsy reveals the autoimmune aetiology of this disorder.
Daniela Latorre, Ulf Kallweit, Eric Armentani et al.
A core problem in nuclear assembly
Chromosomes can exist outside the nucleus in rupture-prone structures called micronuclei. It emerges that micronuclei are fragile because their outer layer lacks some nuclear-envelope components.
Matthias Samwer, Daniel W. Gerlich
Tc toxin activation requires unfolding and refolding of a β-propeller
A high-resolution cryo-electron microscopy structure of a complete Tc holotoxin complex reveals the precise mechanism of Tc toxin assembly, gate opening and release of the cytotoxic enzyme into the translocation channel.
Christos Gatsogiannis, Felipe Merino, Daniel Roderer et al.
Put to sleep by immune cells
The sleep disorder narcolepsy is linked to immune-system genes and is caused by the loss of neurons that express the protein hypocretin. Hypocretin-targeting immune cells have now been found in people with narcolepsy.
Roland S. Liblau
Clearance of senescent glial cells prevents tau-dependent pathology and cognitive decline
In a mouse model of tau-dependent neurodegenerative disease, the clearance of senescent glial cells prevents the degeneration of cortical and hippocampal neurons and preserves cognitive function.
Tyler J. Bussian, Asef Aziz, Charlton F. Meyer et al.
Device-independent quantum random-number generation
Yang Liu, Qi Zhao, Ming-Han Li et al.
Nuclear envelope assembly defects link mitotic errors to chromothripsis
The mitotic spindle prevents normal nuclear envelope assembly on missegregated chromosomes, leading to spontaneous envelope disruption of micronuclei and subsequent genome instability.
Shiwei Liu, Mijung Kwon, Mark Mannino et al.
Transience of the North American High Plains landscape and its impact on surface water
The High Plains region of North America is in a transient state, with a younger, efficient network of river channels progressively cannibalizing an older, less efficient region, aiding water retention for wetlands and groundwater recharge.
Sean D. Willett, Scott W. McCoy, Helen W. Beeson
mRNA circularization by METTL3–eIF3h enhances translation and promotes oncogenesis
METTL3, the enzyme responsible for m6A modification, influences translation by interacting with eIF3h to mediate looping between the regions near the stop codon and 5′ cap of mRNA.
Junho Choe, Shuibin Lin, Wencai Zhang et al.
Ring nucleases deactivate type III CRISPR ribonucleases by degrading cyclic oligoadenylate
In the CRISPR type III system, ‘ring’ nucleases possess a metal-independent mechanism that cleaves cyclic oligoadenylate ring molecules to switch off the antiviral state in cells.
Januka S. Athukoralage, Christophe Rouillon, Shirley Graham et al.
The role of miniaturization in the evolution of the mammalian jaw and middle ear
Biomechanical analyses of mammaliaform and cynodont fossils demonstrate that miniaturization drove the evolutionary transformation of the mammalian jaw, which preceded the optimization of bite force-to-joint load in the mandible.
Stephan Lautenschlager, Pamela G. Gill, Zhe-Xi Luo et al.
Structure of the membrane-assembled retromer coat determined by cryo-electron tomography
The retromer complex (the vacuolar protein sorting heterotrimer Vps26–Vps29–Vps35) has been resolved in association with membranes and the sorting nexin protein Vps5 using cryo-electron tomography.
Oleksiy Kovtun, Natalya Leneva, Yury S. Bykov et al.
Sensation, movement and learning in the absence of barrel cortex
Mice can learn to detect objects with their whiskers and respond appropriately even in the absence of their primary somatosensory cortex.
Y. Kate Hong, Clay O. Lacefield, Chris C. Rodgers et al.
Time-asymmetric loop around an exceptional point over the full optical communications band
Time-asymmetric light transmission over the entire optical communications band is achieved using a silicon photonic structure with photonic modes that dynamically encircle an exceptional point in the optical domain.
Jae Woong Yoon, Youngsun Choi, Choloong Hahn et al.
 
News & Views  
 
 
 
Protein structures guide the design of a much-needed tool for neuroscience
Patrick Scheerer, Elizabeth Unger, Lin Tian
 
Bird forecasting by radar
Mary Abraham
 
Timing the action of light on matter
Thomas Fennel
 
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Tissue ‘melting’ sculpts embryo
Pierre-François Lenne, Vikas Trivedi
Reducing neuronal inhibition restores locomotion in paralysed mice
Grégoire Courtine
Short proton bunches rapidly accelerate energetic electrons
Toshiki Tajima
From the archive
T cells engineered to home in on brain cancer
Michael Platten
Brief Communications Arising  
 
 
 
Conflicting evidence for HIV enrichment in CD32+ CD4 T cells
Liliana Pérez, Jodi Anderson, Jeffrey Chipman et al.
The role of CD32 during HIV-1 infection
Lynn N. Bertagnolli, Jennifer A. White, Francesco R. Simonetti et al.
Evidence that CD32a does not mark the HIV-1 latent reservoir
Christa E. Osuna, So-Yon Lim, Jessica L. Kublin et al.
Descours et al. reply
Benjamin Descours, Gael Petitjean, Monsef Benkirane
Review  
 
 
 
Decoding the phase structure of QCD via particle production at high energy
By analysing particle production in high-energy nuclear collisions, the phase boundary of strongly interacting matter is located and the phase structure of quantum chromodynamics is elucidated, implying quark–hadron duality.
Anton Andronic, Peter Braun-Munzinger, Krzysztof Redlich et al.
Articles  
 
 
 
A homing system targets therapeutic T cells to brain cancer
Therapeutic T cells bearing ligands engineered to optimize adhesion and transmigration through the blood–brain barrier can be targeted to brain tumours.
Heba Samaha, Antonella Pignata, Kristen Fousek et al.
Extensive sex differences at the initiation of genetic recombination
Differential DNA methylation and the long-range effects of chromatin organization lead to pronounced differences in recombination landscape between males and females.
Kevin Brick, Sarah Thibault-Sennett, Fatima Smagulova et al.
Crystal structure of the natural anion-conducting channelrhodopsin GtACR1
The crystal structure of anion channelrhodopsin-1 (ACR1) from the algae Guillardia theta provides insights into the basis of anion conductance.
Yoon Seok Kim, Hideaki E. Kato, Keitaro Yamashita et al.
Structural mechanisms of selectivity and gating in anion channelrhodopsins
Crystal structures and molecular simulations of the designed anion-conducting channelrhodopsin iC++ provide molecular insights that enable structure-based design of channelrhodopsins with desirable properties for use as optogenetic tools.
Hideaki E. Kato, Yoon Seok Kim, Joseph M. Paggi et al.
Letters  
 
 
 
Superluminal motion of a relativistic jet in the neutron-star merger GW170817
Emission from the radio counterpart of the gravitation-wave event GW170817 was powered by a wide-angle outflow at early times, but probably dominated by a narrowly collimated jet at later times.
K. P. Mooley, A. T. Deller, O. Gottlieb et al.
A dynamically young and perturbed Milky Way disk
An analysis of the motions of six million stars in the Milky Way disk reveals substructures such as snail shells and ridges, indicating that our Galaxy has been recently perturbed.
T. Antoja, A. Helmi, M. Romero-Gómez et al.
Acceleration of electrons in the plasma wakefield of a proton bunch
Electron acceleration to very high energies is achieved in a single step by injecting electrons into a ‘wake’ of charge created in a 10-metre-long plasma by speeding long proton bunches.
E. Adli, A. Ahuja, O. Apsimon et al.
Deterministic teleportation of a quantum gate between two logical qubits
A teleported controlled-NOT gate is realized experimentally between two logical qubits implemented as superconducting cavity quantum memories, thus demonstrating an important tool for universal computation in a quantum modular architecture.
Kevin S. Chou, Jacob Z. Blumoff, Christopher S. Wang et al.
Absolute timing of the photoelectric effect
The absolute timing of the photoelectric effect has proved difficult to measure, but the delay between photon arrival at a tungsten surface and ejection of photoelectrons has now been determined.
M. Ossiander, J. Riemensberger, S. Neppl et al.
Superstructures generated from truncated tetrahedral quantum dots
Truncated tetrahedral nanocrystals can self-assemble into one-, two- and three-dimensional superstructures.
Yasutaka Nagaoka, Rui Tan, Ruipeng Li et al.
Ice loss from the East Antarctic Ice Sheet during late Pleistocene interglacials
Studies of an Antarctic marine sediment core suggest that the East Antarctic Ice Sheet retreated in the vicinity of the Wilkes Subglacial Basin during extended warm periods of the late Pleistocene, when temperatures were similar to those predicted to occur within this century.
David J. Wilson, Rachel A. Bertram, Emma F. Needham et al.
Ancient herders enriched and restructured African grasslands
Isotopic and sedimentary analyses of soils at Pastoral Neolithic archaeological sites in Kenya demonstrate the long-term influence of nutrient enrichment on savannah environments that has accompanied pastoralist settlement over the past three millennia.
Fiona Marshall, Rachel E. B. Reid, Steven Goldstein et al.
A cortical filter that learns to suppress the acoustic consequences of movement
Training of mice to associate a particular sound frequency with locomotion results in selective suppression of cortical responses to that frequency during movement, consistent with a motor-dependent form of auditory cortical plasticity.
David M. Schneider, Janani Sundararajan, Richard Mooney
Required growth facilitators propel axon regeneration across complete spinal cord injury
Stimulating the intrinsic growth capacity of neurons and providing growth-supportive substrate and chemoattraction can allow axon regrowth across anatomically complete spinal cord injuries in adult rodents.
Mark A. Anderson, Timothy M. O’Shea, Joshua E. Burda et al.
A fluid-to-solid jamming transition underlies vertebrate body axis elongation
Cell collectives in embryonic tissues undergo a fluid-to-solid jamming transition, similar to those that occur in soft materials such as foams, emulsions and colloidal suspensions, to physically sculpt the vertebrate body axis.
Alessandro Mongera, Payam Rowghanian, Hannah J. Gustafson et al.
Tracing HIV-1 strains that imprint broadly neutralizing antibody responses
Similarity of antibody responses in HIV-1 transmission pairs reveals a significant impact of the virus genome on imprinting antibody responses.
Roger D. Kouyos, Peter Rusert, Claus Kadelka et al.
Experimental and computational framework for a dynamic protein atlas of human cell division
Quantitative live-cell imaging provides a dynamic protein atlas of mitosis.
Yin Cai, M. Julius Hossain, Jean-Karim Hériché et al.
In vivo CRISPR editing with no detectable genome-wide off-target mutations
A strategy developed to define off-target effects of gene-editing nucleases in whole organisms is validated and leveraged to show that CRISPR–Cas9 nucleases can be used effectively in vivo without inducing detectable off-target mutations.
Pinar Akcakaya, Maggie L. Bobbin, Jimmy A. Guo et al.
 
 
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Amendments & Corrections
 
Author Correction: Disruption of the beclin 1–BCL2 autophagy regulatory complex promotes longevity in mice
Álvaro F. Fernández, Salwa Sebti, Yongjie Wei et al.
Publisher Correction: Magnetic edge states and coherent manipulation of graphene nanoribbons
Michael Slota, Ashok Keerthi, William K. Myers et al.
Publisher Correction: Inference of ecological and social drivers of human brain-size evolution
Mauricio González-Forero, Andy Gardner
Retraction Note: Selective killing of cancer cells by a small molecule targeting the stress response to ROS
Lakshmi Raj, Takao Ide, Aditi U. Gurkar et al.
 
 
Nature Index
 
Nature Index 2018 Rising Stars
 
 
     
 
 
 
 

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