Scientific Reports Biology Table of Contents e-alert: 24 July 2018

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24 July 2018       •Visit Scientific Reports •Submit your manuscript to Scientific Reports     Welcome to your Table of Contents e-alert for Scientific Reports           Biological Sciences               Coactivation of MEP-biosynthetic genes and accumulation of abietane diterpenes in Salvia sclarea by heterologous expression of WRKY and MYC2 transcription factors ▶     Mariaevelina Alfieri, Maria Carmela Vaccaro, Elisa Cappetta et al.             Sequential Effects in SNARC ▶     Dinis Gökaydin, Peter Brugger, Tobias Loetscher             The role of the baroreflex and parasympathetic nervous system in fructose-induced cardiac and metabolic alterations ▶     Fernando dos Santos, Ivana C. Moraes-Silva, Edson D. Moreira et al.             Gene expression related to trehalose metabolism and its effect on Volvariella volvacea under low temperature stress ▶     Xu Zhao, Xiaoxia Song, Yapeng Li et al.             Cellular-resolution 3D virtual histology of human coronary arteries using x-ray phase tomography ▶     William Vågberg, Jonas Persson, Laszlo Szekely et al.             A simple strategy for retargeting lentiviral vectors to desired cell types via a disulfide-bond-forming protein-peptide pair ▶     Nagarjun Kasaraneni, Ana M. Chamoun-Emanuelli, Gus A. Wright et al.             Library screening of cell-penetrating peptide for BY-2 cells, leaves of Arabidopsis, tobacco, tomato, poplar, and rice callus ▶     Keiji Numata, Yoko Horii, Kazusato Oikawa et al.             Circ2Disease: a manually curated database of experimentally validated circRNAs in human disease ▶     Dongxia Yao, Lei Zhang, Mengyue Zheng et al.             Phenological tracking associated with increased salmon consumption by brown bears ▶     William W. Deacy, Joy A. Erlenbach, William B. Leacock et al.             Intact glycosphingolipidomic analysis of the cell membrane during differentiation yields extensive glycan and lipid changes ▶     Maurice Wong, Gege Xu, Dayoung Park et al.             The alerting effect of the wake maintenance zone during 40 hours of sleep deprivation ▶     Jan de Zeeuw, Sophia Wisniewski, Alexandra Papakonstantinou et al.             Force field adaptation does not alter space representation ▶     Carine Michel, Lucie Bonnetain, Sarah Amoura et al.             Anaesthetic Effects of Eugenol on Grass Shrimp (Palaemonetes sinensis) of Different Sizes at Different Concentrations and Temperatures ▶     Yingdong Li, Qiuxin She, Zhibin Han et al.             Intestinal crypts recover rapidly from focal damage with coordinated motion of stem cells that is impaired by aging ▶     Jiahn Choi, Nikolai Rakhilin, Poornima Gadamsetty et al.             Orbital Frontal Cortex Projections to Secondary Motor Cortex Mediate Exploitation of Learned Rules ▶     Drew C. Schreiner, Christina M. Gremel             Uncaria tomentosa improves insulin sensitivity and inflammation in experimental NAFLD ▶     Layanne C. C. Araujo, Karla B. Feitosa, Gilson M. Murata et al.             Assessment of DNA-PKcs kinase activity by quantum dot–based microarray ▶     Florian Lafont, Nizar Ayadi, Cathy Charlier et al.             Nitric oxide dependent signaling via cyclic GMP in dendritic cells regulates migration and T-cell polarization ▶     Stefanie Gnipp, Evanthia Mergia, Michelle Puschkarow et al.             A simple model of mechanical effects to estimate metabolic cost of human walking ▶     Salman Faraji, Amy R. Wu, Auke J. Ijspeert             Evidence for excessive osteoclast activation in SIRT6 null mice ▶     Demao Zhang, Junjun Jing, Feng Lou et al.             Sympathetic inputs regulate adaptive thermogenesis in brown adipose tissue through cAMP-Salt inducible kinase axis ▶     Esther Paulo, Dongmei Wu, Yangmeng Wang et al.             Genetic diversity and selection signatures of the beef ‘Charolais de Cuba’ breed ▶     Yoel Rodriguez-Valera, Gilles Renand, Michel Naves et al.             Discrete, high-latitude foraging areas are important to energy budgets and population dynamics of migratory leatherback turtles ▶     Bryan P. Wallace, Michael Zolkewitz, Michael C. James             Experimentally induced metamorphosis in highly regenerative axolotl (ambystoma mexicanum) under constant diet restructures microbiota ▶     Turan Demircan, Guvanch Ovezmyradov, Berna Yıldırım et al.             Attachment ability of the polyphagous bug Nezara viridula (Heteroptera: Pentatomidae) to different host plant surfaces ▶     Gianandrea Salerno, Manuela Rebora, Elena Gorb et al.             Neuroepithelial control of mucosal inflammation in acute cystitis ▶     Daniel S. C. Butler, Ines Ambite, Karoly Nagy et al.             CYP2C9 and OATP1B1 genetic polymorphisms affect the metabolism and transport of glimepiride and gliclazide ▶     Fayou Yang, Xiaomin Xiong, Yonghua Liu et al.             Temporal analysis of Arabidopsis genes activated by Eucalyptus grandis NAC transcription factors associated with xylem fibre and vessel development ▶     M. Laubscher, K. Brown, L. B. Tonfack et al.             Analysis of the influence of imaging-related uncertainties on cerebral aneurysm deformation quantification using a no-deformation physical flow phantom ▶     Daniel Schetelig, Jan Sedlacik, Jens Fiehler et al.             Integrated mRNA, sRNA, and degradome sequencing reveal oilseed rape complex responses to Sclerotinia sclerotiorum (Lib.) infection ▶     Hongju Jian, Jinqi Ma, Lijuan Wei et al.             Narrative and active video game in separate and additive effects of physical activity and cognitive function among young adults ▶     Jungyun Hwang, Amy Shirong Lu             Food Chemicals Disrupt Human Gut Microbiota Activity And Impact Intestinal Homeostasis As Revealed By In Vitro Systems ▶     Clémence Defois, Jérémy Ratel, Ghislain Garrait et al.             Slippage of degenerate primers can cause variation in amplicon length ▶     Vasco Elbrecht, Paul D. N. Hebert, Dirk Steinke             Prevascularization of dermal substitutes with adipose tissue-derived microvascular fragments enhances early skin grafting ▶     Florian S. Frueh, Thomas Später, Christina Körbel et al.             The lincRNA MIRAT binds to IQGAP1 and modulates the MAPK pathway in NRAS mutant melanoma ▶     Martina Sanlorenzo, Igor Vujic, Rosaura Esteve-Puig et al.             Inter-individual differences in contamination profiles as tracer of social group association in stranded sperm whales ▶     Joseph G. Schnitzler, Marianna Pinzone, Marijke Autenrieth et al.             Embryonic germ cell extracts erase imprinted genes and improve the efficiency of induced pluripotent stem cells ▶     Jing Hu, Qiaoshi Zhao, Yukuan Feng et al.             The Effect of Size Statistics of the Background Texture on Perceived Target Size ▶     Chia-Ching Wu, Chien-Chung Chen             Faster growth with shorter antigens can explain a VSG hierarchy during African trypanosome infections: a feint attack by parasites ▶     Dianbo Liu, Luca Albergante, T. J. Newman et al.             Plasmodium falciparum RUVBL3 protein: a novel DNA modifying enzyme and an interacting partner of essential HAT protein MYST ▶     Utsav Sen, Himani Saxena, Juhi Khurana et al.             Cytokine Regulation in Human CD4 T Cells by the Aryl Hydrocarbon Receptor and Gq-Coupled Receptors ▶     Jeremy P. McAleer, Jun Fan, Bryanna Roar et al.             Structure of the replication regulator Sap1 reveals functionally important interfaces ▶     Maria M. Jørgensen, Babatunde Ekundayo, Mikel Zaratiegui et al.             Identification and characterization of known and novel microRNAs in strawberry fruits induced by Botrytis cinerea ▶     Yaoxin Liang, Yuhan Guan, Shaoxi Wang et al.             Comparison between complete genomes of an isolate of Pseudomonas syringae pv. actinidiae from Japan and a New Zealand isolate of the pandemic lineage ▶     Russell T. M. Poulter, Joycelyn Ho, Thomas Handley et al.             Large body size constrains dispersal assembly of communities even across short distances ▶     Richard I. Bailey, Freerk Molleman, Chloe Vasseur et al.             Comprehensive map of age-associated splicing changes across human tissues and their contributions to age-associated diseases ▶     Kun Wang, Di Wu, Haoyue Zhang et al.             Multiple Cold-Water Immersions Attenuate Muscle Damage but not Alter Systemic Inflammation and Muscle Function Recovery: A Parallel Randomized Controlled Trial ▶     Angelina Freitas Siqueira, Amilton Vieira, Martim Bottaro et al.             Systematic evaluation of error rates and causes in short samples in next-generation sequencing ▶     Franziska Pfeiffer, Carsten Gröber, Michael Blank et al.             Arylsulphatase A Pseudodeficiency (ARSA-PD), hypertension and chronic renal disease in Aboriginal Australians ▶     Dave Tang, Michaela Fakiola, Genevieve Syn et al.             Transcriptome Profiles of Nod Factor-independent Symbiosis in the Tropical Legume Aeschynomene evenia ▶     Djamel Gully, Pierre Czernic, Stéphane Cruveiller et al.             Phytolith assemblage analysis for the identification of rice paddy ▶     Xiujia Huan, Houyuan Lu, Jianping Zhang et al.             Neandertal fire-making technology inferred from microwear analysis ▶     A. C. Sorensen, E. Claud, M. Soressi             A Novel In Vivo Model to Study Impaired Tissue Regeneration Mediated by Cigarette Smoke ▶     Marjorie Alvarez, Myra N. Chávez, Miguel Miranda et al.             Global investigation of an engineered nitrogen-fixing Escherichia coli strain reveals regulatory coupling between host and heterologous nitrogen-fixation genes ▶     Zhimin Yang, Yunlei Han, Yao Ma et al.             Metabolic Phenotyping and Strain Characterisation of Pseudomonas aeruginosa Isolates from Cystic Fibrosis Patients Using Rapid Evaporative Ionisation Mass Spectrometry ▶     Emmanuelle E. Bardin, Simon J. S. Cameron, Alvaro Perdones-Montero et al.             Substitution of linoleic acid with α-linolenic acid or long chain n-3 polyunsaturated fatty acid prevents Western diet induced nonalcoholic steatohepatitis ▶     Sugeedha Jeyapal, Suryam Reddy Kona, Surekha Venkata Mullapudi et al.             Small molecule activator of Nm23/NDPK as an inhibitor of metastasis ▶     Jae-Jin Lee, Hwang Suk Kim, Ji-Sun Lee et al.             Increased testicular blood flow maintains oxygen delivery and avoids testicular hypoxia in response to reduced oxygen content in inspired air ▶     G. Rizzoto, C. Hall, J. V. Tyberg et al.             Chromatin remodeling in Drosophila preblastodermic embryo extract ▶     Eva Šatović, Jofre Font-Mateu, Albert Carbonell et al.             Telomere length and survival in primary cutaneous melanoma patients ▶     Sivaramakrishna Rachakonda, Nalini Srinivas, Seyed Hamidreza Mahmoudpour et al.             Evaluation of Oxford Nanopore’s MinION Sequencing Device for Microbial Whole Genome Sequencing Applications ▶     Andrea D. Tyler, Laura Mataseje, Chantel J. Urfano et al.             Novel 2-phenyloxypyrimidine derivative induces apoptosis and autophagy via inhibiting PI3K pathway and activating MAPK/ERK signaling in hepatocellular carcinoma cells ▶     Jing Wang, Peng Sun, Yijun Chen et al.             Contrasting biogeography and diversity patterns between diatoms and haptophytes in the central Pacific Ocean ▶     Hisashi Endo, Hiroyuki Ogata, Koji Suzuki             Runx1-Stat3 signaling regulates the epithelial stem cells in continuously growing incisors ▶     Safiye E. Sarper, Toshihiro Inubushi, Hiroshi Kurosaka et al.             Interactions of bacteriophage T4 adhesin with selected lipopolysaccharides studied using atomic force microscopy ▶     Ewa Brzozowska, Adam Leśniewski, Sławomir Sęk et al.             Cellular stress induces erythrocyte assembly on intravascular von Willebrand factor strings and promotes microangiopathy ▶     Jan P. Nicolay, Verena Thorn, Christoph Daniel et al.             Chronic Electrical Stimulation Promotes the Excitability and Plasticity of ESC-derived Neurons following Glutamate-induced Inhibition In vitro ▶     Charles-Francois V. Latchoumane, LaDonya Jackson, Mohammad S. Eslampanah Sendi et al.             Characterization of the effects of immunomodulatory drug fingolimod (FTY720) on human T cell receptor signaling pathways ▶     Alan Baer, Winston Colon-Moran, Nirjal Bhattarai             FerA is a Membrane-Associating Four-Helix Bundle Domain in the Ferlin Family of Membrane-Fusion Proteins ▶     Faraz M. Harsini, Sukanya Chebrolu, Kerry L. Fuson et al.             Response Surface Methodology-Genetic Algorithm Based Medium Optimization, Purification, and Characterization of Cholesterol Oxidase from Streptomyces rimosus ▶     Akanksha Srivastava, Vineeta Singh, Shafiul Haque et al.             Triptolide attenuates proteinuria and podocyte apoptosis via inhibition of NF-κB/GADD45B ▶     Ling Wang, Liwen Zhang, Qing Hou et al.             Determination of risk factors for herpesvirus outbreak in oysters using a broad-scale spatial epidemiology framework ▶     Fabrice Pernet, Marine Fuhrmann, Bruno Petton et al.             Prior object-knowledge sharpens properties of early visual feature-detectors ▶     Christoph Teufel, Steven C. Dakin, Paul C. Fletcher             Potent Attractant for Root-Knot Nematodes in Exudates from Seedling Root Tips of Two Host Species ▶     Rasa Čepulytė, Wiseborn B. Danquah, George Bruening et al.             Crystal structure and substrate binding mode of ectonucleotide phosphodiesterase/pyrophosphatase-3 (NPP3) ▶     Christoph Döhler, Matthias Zebisch, Norbert Sträter             A micron-scale surface topography design reducing cell adhesion to implanted materials ▶     Francesco Robotti, Simone Bottan, Federica Fraschetti et al.             Natural menstrual rhythm and oral contraception diversely affect exhaled breath compositions ▶     Pritam Sukul, Jochen K. Schubert, Phillip Trefz et al.             Carbon dioxide stimulates lake primary production ▶     Mohammed Hamdan, Pär Byström, Erin R. Hotchkiss et al.             Rapid oral bacteria detection based on real-time PCR for the forensic identification of saliva ▶     Ju Yeon Jung, Hyun Kyu Yoon, Sanghyun An et al.             Potential of a polyherbal drug to prevent antimicrobial resistance in bacteria to antibiotics ▶     Tapas Kumar Sar, Indranil Samanta, Achintya Mahanti et al.             Label-free multiphoton microscopy reveals relevant tissue changes induced by alginate hydrogel implantation in rat spinal cord injury ▶     Roberta Galli, Kerim H. Sitoci-Ficici, Ortrud Uckermann et al.             Crystal structure of an L chain optimised 14F7 anti-ganglioside Fv suggests a unique tumour-specificity through an unusual H-chain CDR3 architecture ▶     Kaare Bjerregaard-Andersen, Hedda Johannesen, Noha Abdel-Rahman et al.             Segmental Additive Tissue Engineering ▶     Martina Sladkova, Rawan Alawadhi, Rawan Jaragh Alhaddad et al.             Trichromatic perception of flower colour improves resource detection among New World monkeys ▶     J. D. Hogan, L. M. Fedigan, C. Hiramatsu et al.             Immature particles and capsid-free viral RNA produced by Yellow fever virus-infected cells stimulate plasmacytoid dendritic cells to secrete interferons ▶     Laura Sinigaglia, Ségolène Gracias, Elodie Décembre et al.             Motion cues modulate responses to emotion in movies ▶     Eran Dayan, Avi Barliya, Beatrice de Gelder et al.             Engineering the oleaginous red yeast Rhodotorula glutinis for simultaneous β-carotene and cellulase production ▶     Hong-Wei Pi, Marimuthu Anandharaj, Yi-Ying Kao et al.             Steric interference from intrinsically disordered regions controls dynamin-related protein 1 self-assembly during mitochondrial fission ▶     Bin Lu, Bridget Kennedy, Ryan W. Clinton et al.             Biotic and abiotic drivers of tree seedling recruitment across an alpine treeline ecotone ▶     Esther R. Frei, Eva Bianchi, Giulietta Bernareggi et al.             Endocrine cell type sorting and mature architecture in the islets of Langerhans require expression of Roundabout receptors in β cells ▶     Melissa T. Adams, Jennifer M. Gilbert, Jesus Hinojosa Paiz et al.             Mechanical interactions between bacteria and hydrogels ▶     Nehir Kandemir, Waldemar Vollmer, Nicholas S. Jakubovics et al.             How different sterols contribute to saponin tolerant plasma membranes in sea cucumbers ▶     Emily J. S. Claereboudt, Igor Eeckhaut, Laurence Lins et al.             GOATOOLS: A Python library for Gene Ontology analyses ▶     D. V. Klopfenstein, Liangsheng Zhang, Brent S. Pedersen et al.             Ranking genome-wide correlation measurements improves microarray and RNA-seq based global and targeted co-expression networks ▶     Franziska Liesecke, Dimitri Daudu, Rodolphe Dugé de Bernonville et al.             Extract from Aphloia theiformis, an edible indigenous plant from Reunion Island, impairs Zika virus attachment to the host cell surface ▶     Elodie Clain, Laura Sinigaglia, Andrea Cristine Koishi et al.             Nuclear Norm Clustering: a promising alternative method for clustering tasks ▶     Yi Wang, Yi Li, Chunhong Qiao et al.             Inactivation of TCA cycle enhances Staphylococcus aureus persister cell formation in stationary phase ▶     Ying Wang, Martin Saxtorph Bojer, Shilpa Elizabeth George et al.             An integrative approach to discovering cryptic species within the Bemisia tabaci whitefly species complex ▶     Soňa Vyskočilová, Wee Tek Tay, Sharon van Brunschot et al.             Developmental arrest in Drosophila melanogaster caused by mitochondrial DNA replication defects cannot be rescued by the alternative oxidase ▶     Ana Paula C. Rodrigues, André F. Camargo, Ana Andjelković et al.             Non-canonicaly recruited TCRαβCD8αα IELs recognize microbial antigens ▶     Lukasz Wojciech, Edyta Szurek, Michal Kuczma et al.             MDC1 methylation mediated by lysine methyltransferases EHMT1 and EHMT2 regulates active ATM accumulation flanking DNA damage sites ▶     Sugiko Watanabe, Makoto Iimori, David Virya Chan et al.             Reading and Myopia: Contrast Polarity Matters ▶     Andrea C. Aleman, Min Wang, Frank Schaeffel             Evaluating the potential of residual Pap test fluid as a resource for the metaproteomic analysis of the cervical-vaginal microbiome ▶     Somaieh Afiuni-Zadeh, Kristin L. M. Boylan, Pratik D. Jagtap et al.             A dual-fMRI investigation of the iterated Ultimatum Game reveals that reciprocal behaviour is associated with neural alignment ▶     Daniel J. Shaw, Kristína Czekóová, Rostislav Staněk et al.             Electrostatic Tuning of the Ligand Binding Mechanism by Glu27 in Nitrophorin 7 ▶     Stefania Abbruzzetti, Alessandro Allegri, Axel Bidon-Chanal et al.               • Careers 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