Scientific Reports Biology Table of Contents e-alert: 3 July 2018

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03 July 2018       •Visit Scientific Reports •Submit your manuscript to Scientific Reports     Welcome to your Table of Contents e-alert for Scientific Reports           Biological Sciences               The extent of extra-axonal tissue damage determines the levels of CSPG upregulation and the success of experimental axon regeneration in the CNS ▶     Juhwan Kim, Muhammad S. Sajid, Ephraim F. Trakhtenberg             Multiplex STR amplification sensitivity in a silicon microchip ▶     Senne Cornelis, Maarten Fauvart, Yannick Gansemans et al.             Effect of ionic strength and seawater cations on hagfish slime formation ▶     L. J. Böni, R. Zurflüh, M. E. Baumgartner et al.             Conformation-dependent binding of a Tetrastatin peptide to αvβ3 integrin decreases melanoma progression through FAK/PI3K/Akt pathway inhibition ▶     Eléonore Lambert, Eloïse Fuselier, Laurent Ramont et al.             Nanopore sequencing as a revolutionary diagnostic tool for porcine viral enteric disease complexes identifies porcine kobuvirus as an important enteric virus ▶     Sebastiaan Theuns, Bert Vanmechelen, Quinten Bernaert et al.             Evaluation at scale of microbiome-derived metabolites as biomarker of flavan-3-ol intake in epidemiological studies ▶     Javier I. Ottaviani, Redmond Fong, Jennifer Kimball et al.             Hypothesis on monochromatic vision in scorpionflies questioned by new transcriptomic data ▶     Alexander Böhm, Karen Meusemann, Bernhard Misof et al.             Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin ▶     Amy K. Cain, Christine J. Boinett, Lars Barquist et al.             Age-related differences in humoral and cellular immune responses after primary immunisation: indications for stratified vaccination schedules ▶     Angelika Wagner, Erika Garner-Spitzer, Joanna Jasinska et al.             Synergistic interaction of sprouting and intussusceptive angiogenesis during zebrafish caudal vein plexus development ▶     Swapna karthik, Tijana Djukic, Jun-Dae Kim et al.             Role of the hippocampal CA1 region in incremental value learning ▶     Yeongseok Jeong, Namjung Huh, Joonyeup Lee et al.             Increased nuclear DNA damage precedes mitochondrial dysfunction in peripheral blood mononuclear cells from Huntington’s disease patients ▶     Georgina Askeland, Zaneta Dosoudilova, Marie Rodinova et al.             Root order-based traits of Manchurian walnut & larch and their plasticity under interspecific competition ▶     Salahuddin, Boris Rewald, Muhammad Razaq et al.             Utilization of lactic acid in human myotubes and interplay with glucose and fatty acid metabolism ▶     Jenny Lund, Vigdis Aas, Ragna H. Tingstad et al.             The adiponectin promoter activator NP-1 induces high levels of circulating TNFα and weight loss in obese (fa/fa) Zucker rats ▶     Juan Decara, Antonia Serrano, Francisco Javier Pavón et al.             1-Methyl-D-tryptophan Reduces Tumor CD133+ cells, Wnt/β-catenin and NF-κβp65 while Enhances Lymphocytes NF-κβ2, STAT3, and STAT4 Pathways in Murine Pancreatic Adenocarcinoma ▶     Murad Alahdal, Yun Xing, Tingting Tang et al.             Exposure of Methicillin-Resistant Staphylococcus aureus to Low Levels of the Antibacterial THAM-3ΦG Generates a Small Colony Drug-Resistant Phenotype ▶     Alan J. Weaver, Tami R. Peters, Brian Tripet et al.             Protein Secondary Structure Prediction Based on Data Partition and Semi-Random Subspace Method ▶     Yuming Ma, Yihui Liu, Jinyong Cheng             mPEG-PLA and PLA-PEG-PLA nanoparticles as new carriers for delivery of recombinant human Growth Hormone (rhGH) ▶     Rohollah Ghasemi, Mahdi Abdollahi, Elaheh Emamgholi Zadeh et al.             Molecular mechanisms of tannin accumulation in Rhus galls and genes involved in plant-insect interactions ▶     Hang Chen, Juan Liu, Kai Cui et al.             Climate-induced shifts in leaf unfolding and frost risk of European trees and shrubs ▶     Christof Bigler, Harald Bugmann             Whole genome sequencing reveals widespread distribution of typhoidal toxin genes and VirB/D4 plasmids in bovine-associated nontyphoidal Salmonella ▶     Enrique Jesús Delgado-Suárez, Nelly Selem-Mojica, Rocío Ortiz-López et al.             A qualitative analysis of the bud ontogeny of Dracaena marginata using high-resolution magnetic resonance imaging ▶     Linnea Hesse, Jochen Leupold, Thomas Speck et al.             Jia-Jian-Di-Huang-Yin-Zi decoction exerts neuroprotective effects on dopaminergic neurons and their microenvironment ▶     Jingsi Zhang, Zhennian Zhang, Wen Zhang et al.             Human and Microbial Proteins From Corpora Amylacea of Alzheimer’s Disease ▶     Diana Pisa, Ruth Alonso, Ana Isabel Marina et al.             The Predictive Value of Head Circumference Growth during the First Year of Life on Early Child Traits ▶     Caroline Dupont, Natalie Castellanos-Ryan, Jean R. Séguin et al.             Motion-induced position shift in early Alzheimer’s disease ▶     Fei Ye, Maobin Ye, Jun An et al.             The pial vasculature of the mouse develops according to a sensory-independent program ▶     Matthew D. Adams, Aaron T. Winder, Pablo Blinder et al.             Electrical Stimulation with a Conductive Polymer Promotes Neurite Outgrowth and Synaptogenesis in Primary Cortical Neurons in 3D ▶     Qingsheng Zhang, Stephen Beirne, Kewei Shu et al.             Crystallization of a human galectin-3 variant with two ordered segments in the shortened N-terminal tail ▶     Andrea Flores-Ibarra, Sabine Vértesy, Francisco J. Medrano et al.             Marine microalgae bioengineered Schizochytrium sp. meal hydrolysates inhibits acute inflammation ▶     Xiaoli Wang, Heng Wang, Joseph F. Pierre et al.             Genetic Factors and Genotype-Environment Interactions Contribute to Variation in Melanin Production in the Fungal Pathogen Cryptococcus neoformans ▶     Himeshi Samarasinghe, David Aceituno-Caicedo, Massimo Cogliati et al.             Alteration of circulating natural autoantibodies to CD25-derived peptide antigens and FOXP3 in non-small cell lung cancer ▶     Huan Zhao, Xuan Zhang, Zhifeng Han et al.             Home Use of a Neural-connected Sensory Prosthesis Provides the Functional and Psychosocial Experience of Having a Hand Again ▶     Emily L. Graczyk, Linda Resnik, Matthew A. Schiefer et al.             A novel sample holder for 4D live cell imaging to study cellular dynamics in complex 3D tissue cultures ▶     D. Septiadi, J. Bourquin, E. Durantie et al.             Costs of injury for scent signalling in a strepsirrhine primate ▶     Rachel L. Harris, Marylène Boulet, Kathleen E. Grogan et al.             Reciprocal cross-species induction of outer membrane vesicle biogenesis via secreted factors ▶     Alexander M. Horspool, Jeffrey W. Schertzer             Geographic variation and plasticity in climate stress resistance among southern African populations of Ceratitis capitata (Wiedemann) (Diptera: Tephritidae) ▶     Christopher W. Weldon, Casper Nyamukondiwa, Minette Karsten et al.             Nitrogen loading effects on nitrification and denitrification with functional gene quantity/transcription analysis in biochar packed reactors at 5 °C ▶     Su He, Lili Ding, Yao Pan et al.             Variability in venom composition of European viper subspecies limits the cross-effectiveness of antivenoms ▶     Giulia Zanetti, Elisa Duregotti, Carlo Alessandro Locatelli et al.             Mechanistic insights into the augmented effect of bone marrow mesenchymal stem cells and thiazolidinediones in streptozotocin-nicotinamide induced diabetic rats ▶     Alaaeldin Ahmed Hamza, Ebtehal Mohammad Fikry, Wedad Abdallah et al.             HrpE, the major component of the Xanthomonas type three protein secretion pilus, elicits plant immunity responses ▶     Natalia Gottig, Cecilia V. Vranych, Germán G. Sgro et al.             Visual cues do not enhance sea lion pups’ response to multimodal maternal cues ▶     Kaja Wierucka, Isabelle Charrier, Robert Harcourt et al.             Neonatal- maternal separation primes zymogenic cells in the rat gastric mucosa through glucocorticoid receptor activity ▶     Daniela Ogias, Isadora C. Rattes, Larissa Y. M. Hosoya et al.             Mapping of brain tissue hematocrit in glioma and acute stroke using a dual autoradiography approach ▶     A. Broisat, B. Lemasson, M. Ahmadi et al.             Differential preservation of endogenous human and microbial DNA in dental calculus and dentin ▶     Allison E. Mann, Susanna Sabin, Kirsten Ziesemer et al.             Azosemide is more potent than bumetanide and various other loop diuretics to inhibit the sodium-potassium-chloride-cotransporter human variants hNKCC1A and hNKCC1B ▶     Philip Hampel, Kerstin Römermann, Nanna MacAulay et al.             Processing Homophones Interactively: Evidence from eye-movement data ▶     Michael C. W. Yip, Mingjun Zhai             Motion cues tune social influence in shoaling fish ▶     Bertrand Lemasson, Colby Tanner, Christa Woodley et al.             Evaluating the Contribution of North American Zoos and Aquariums to Endangered Species Recovery ▶     Judy P. Che-Castaldo, Shelly A. Grow, Lisa J. Faust             Downregulation of WNT11 is associated with bladder tissue fibrosis in patients with interstitial cystitis/bladder pain syndrome without Hunner lesion ▶     Daeheon Choi, Ju-Young Han, Jung Hyun Shin et al.             Reply to ‘Increased food supply mitigates ocean acidification effects on calcification but exacerbates effects on growth’ ▶     Laura Ramajo, Iris E. Hendriks, Nelson A. Lagos et al.             Lacrimal Canaliculus Imaging Using Optical Coherence Tomography Dacryography ▶     Masahiro Fujimoto, Akihito Uji, Ken Ogino et al.             The role of sentrin-specific protease 2 substrate recognition in TGF-β-induced tumorigenesis ▶     Che-Chang Chang, Yen-Sung Huang, Ying-Mei Lin et al.             Sample-to-Answer Droplet Magnetofluidic Platform for Point-of-Care Hepatitis C Viral Load Quantitation ▶     Dong Jin Shin, Alexander Y. Trick, Yu-Hsiang Hsieh et al.             xMD-miRNA-seq to generate near in vivo miRNA expression estimates in colon epithelial cells ▶     Avi Z. Rosenberg, Carrie Wright, Karen Fox-Talbot et al.             Increased food supply mitigates ocean acidification effects on calcification but exacerbates effects on growth ▶     Norah E. M. Brown, Joey R. Bernhardt, Kathryn M. Anderson et al.             7B2 chaperone knockout in APP model mice results in reduced plaque burden ▶     Timothy S. Jarvela, Tasha Womack, Polymnia Georgiou et al.             Co-protoporphyrin IX and Sn-protoporphyrin IX inactivate Zika, Chikungunya and other arboviruses by targeting the viral envelope ▶     Romulo L. S. Neris, Camila M. Figueiredo, Luiza M. Higa et al.             Instability of personal human metabotype is linked to all-cause mortality ▶     M. E. Lacruz, A. Kluttig, D. Tiller et al.             Optimal integration of actions and their visual effects is based on both online and prior causality evidence ▶     Nienke B. Debats, Herbert Heuer             HPV infection and bacterial microbiota in the placenta, uterine cervix and oral mucosa ▶     Heidi Tuominen, Samuli Rautava, Stina Syrjänen et al.             Changes in gene expression in Camelina sativa roots and vegetative tissues in response to salinity stress ▶     Zohreh Heydarian, Min Yu, Margaret Gruber et al.             Mental template matching is a potential cultural transmission mechanism for New Caledonian crow tool manufacturing traditions ▶     S. A. Jelbert, R. J. Hosking, A. H. Taylor et al.             Live cell imaging reveals focal adhesions mechanoresponses in mammary epithelial cells under sustained equibiaxial stress ▶     Lorena Sigaut, Catalina von Bilderling, Micaela Bianchi et al.             Arabidopsis mutants impaired in glutathione biosynthesis exhibit higher sensitivity towards the glucosinolate hydrolysis product allyl-isothiocyanate ▶     János Urbancsok, Atle M. Bones, Ralph Kissen             Inflammatory cytokines and biofilm production sustain Staphylococcus aureus outgrowth and persistence: a pivotal interplay in the pathogenesis of Atopic Dermatitis ▶     E. G. Di Domenico, I. Cavallo, V. Bordignon et al.             Mechanism Underlying Green Discolouration of Myoglobin Induced by Atmospheric Pressure Plasma ▶     Hae In Yong, Mookyoung Han, Hyun-Joo Kim et al.             GTP-binding facilitates EB1 recruitment onto microtubules by relieving its auto-inhibition ▶     K. K. Gireesh, A. Shine, R. Bhagya Lakshmi et al.             Motility and chemotaxis of bacteria-driven microswimmers fabricated using antigen 43-mediated biotin display ▶     Oliver Schauer, Babak Mostaghaci, Remy Colin et al.             Unsupervised CT Lung Image Segmentation of a Mycobacterium Tuberculosis Infection Model ▶     Pedro M. Gordaliza, Arrate Muñoz-Barrutia, Mónica Abella et al.             Interaction between the barley allelochemical compounds gramine and hordenine and artificial lipid bilayers mimicking the plant plasma membrane ▶     Simon Lebecque, Jean-Marc Crowet, Laurence Lins et al.             Transcriptomics analysis reveals new insights in E171-induced molecular alterations in a mouse model of colon cancer ▶     Héloïse Proquin, Marlon J. Jetten, Marloes C. M. Jonkhout et al.             Maternal Vitamin D Prevents Abnormal Dopaminergic Development and Function in a Mouse Model of Prenatal Immune Activation ▶     Wei Luan, Luke Alexander Hammond, Stephanie Vuillermot et al.             Incentive motivation in pet dogs – preference for constant vs varied food rewards ▶     Annika Bremhorst, Sarah Bütler, Hanno Würbel et al.             Water immobilization by glass microspheres affects biological activity ▶     A. G. Marangoni, M. S. Al-Abdul-Wahid, R. Nicholson et al.             Automated detection and manipulation of sleep in C. elegans reveals depolarization of a sleep-active neuron during mechanical stimulation-induced sleep deprivation ▶     Jan Spies, Henrik Bringmann             Confined photo-release of nitric oxide with simultaneous two-photon fluorescence tracking in a cellular system ▶     Hanna Thomsen, Nino Marino, Sabrina Conoci et al.             Comparative analysis of xenobiotic metabolising N-acetyltransferases from ten non-human primates as in vitro models of human homologues ▶     Theodora Tsirka, Maria Konstantopoulou, Audrey Sabbagh et al.             A cylindrical assembly model and dynamics of the Ebola virus VP40 structural matrix ▶     Elumalai Pavadai, Bernard S. Gerstman, Prem P. Chapagain             Biomarker discovery by integrated joint non-negative matrix factorization and pathway signature analyses ▶     Naoya Fujita, Shinji Mizuarai, Katsuhiko Murakami et al.             Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase ▶     Seiji Negoro, Naoki Shibata, Young-Ho Lee et al.             Butyrate produced by gut commensal bacteria activates TGF-beta1 expression through the transcription factor SP1 in human intestinal epithelial cells ▶     Camille Martin-Gallausiaux, Fabienne Béguet-Crespel, Ludovica Marinelli et al.             Fungal endophytes from arid areas of Andalusia: high potential sources for antifungal and antitumoral agents ▶     Victor González-Menéndez, Gloria Crespo, Nuria de Pedro et al.             A taxonomic signature of obesity in a large study of American adults ▶     Brandilyn A. Peters, Jean A. Shapiro, Timothy R. Church et al.             Coccolith dissolution within copepod guts affects fecal pellet density and sinking rate ▶     Meredith M. White, Jesica D. Waller, Laura C. Lubelczyk et al.             Origin and classification of spontaneous discharges in mouse superficial dorsal horn neurons ▶     Javier Lucas-Romero, Ivan Rivera-Arconada, Carolina Roza et al.             Metabolites Re-programming and Physiological Changes Induced in Scenedesmus regularis under Nitrate Treatment ▶     Nyuk-Ling Ma, Ahmad Aziz, Kit-Yinn Teh et al.             A novel high-throughput method for kinetic characterisation of anaerobic bioproduction strains, applied to Clostridium kluyveri ▶     Pieter Candry, Timothy Van Daele, Kyrina Denis et al.             Noise-induced stabilization and fixation in fluctuating environment ▶     Immanuel Meyer, Nadav M. Shnerb             Septicemia due to Streptococcus dysgalactiae subspecies dysgalactiae in vampire bats (Desmodus rotundus) ▶     Mateus de Souza Ribeiro Mioni, Fernando Favian Castro Castro, Luisa Zanolli Moreno et al.             In-vivo topical mucosal delivery of a fluorescent deoxy-glucose delineates neoplasia from normal in a preclinical model of oral epithelial neoplasia ▶     Rahul Pal, Paula Villarreal, Suimin Qiu et al.             Keratinocyte differentiation induces APOBEC3A, 3B, and mitochondrial DNA hypermutation ▶     Kousho Wakae, Tomoaki Nishiyama, Satoru Kondo et al.             Growth of a common planktonic diatom quantified using solid medium culturing ▶     Olga Kourtchenko, Tuomas Rajala, Anna Godhe             BALB/c mice infected with DENV-2 strain 66985 by the intravenous route display injury in the central nervous system ▶     Natália G. Salomão, Kíssila Rabelo, Tiago F. Póvoa et al.             Experimental infection of dromedaries with Middle East respiratory syndrome-Coronavirus is accompanied by massive ciliary loss and depletion of the cell surface receptor dipeptidyl peptidase 4 ▶     Ann-Kathrin Haverkamp, Annika Lehmbecker, Ingo Spitzbarth et al.             The pharmacological perturbation of brain zinc impairs BDNF-related signaling and the cognitive performances of young mice ▶     Valerio Frazzini, Alberto Granzotto, Manuela Bomba et al.             Cross-Cultural Evidence for Apparent Racial Outgroup Advantage: Congruence between Perceived Facial Aggressiveness and Fighting Success ▶     Vít Třebický, S. Adil Saribay, Karel Kleisner et al.             Endospore forming bacteria may be associated with maintenance of surgically-induced remission in Crohn’s disease ▶     Michael R. Laffin, Troy Perry, Heekuk Park et al.             Quiescence status of glioblastoma stem-like cells involves remodelling of Ca2+ signalling and mitochondrial shape ▶     Francisco J. Aulestia, Isabelle Néant, Jihu Dong et al.             Ceratosaur palaeobiology: new insights on evolution and ecology of the southern rulers ▶     Rafael Delcourt             Gp41 dynamically interacts with the TCR in the immune synapse and promotes early T cell activation ▶     Oren Yakovian, Roland Schwarzer, Julia Sajman et al.                 • Careers & Jobs           naturejobs.com Science jobs of the week       Programme Leader-Track     Medical Research 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