Wednesday, June 20, 2018

Nature Chemical Biology Contents: July 2018, Volume 14 No 7

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TABLE OF CONTENTS

July 2018 Volume 14, Issue 7

Research Highlights
News & Views
Perspectives
Brief Communications
Articles
 
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Innovations In: The Biggest Questions in Science

Read our new special report on the nature of spacetime, the origin of life, the source of consciousness, and other fundamental questions in science.

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Produced with support from: The Kavli Prize

 
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Nature Spotlight on Hong Kong: building science innovation 

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Research Highlights

 

Please hold for chaperones    p637
Caitlin Deane
doi:10.1038/s41589-018-0092-6

ZIPing around CARs    p637
Grant Miura
doi:10.1038/s41589-018-0093-5

Tricks for taking up residence    p637
Mirella Bucci
doi:10.1038/s41589-018-0094-4

Stabilizing synapsis    p637
Yiyun Song
doi:10.1038/s41589-018-0095-3

Nature Chemical Biology
JOBS of the week
Postdoctoral research fellowship in Chemical Neuroscience
University of Oslo
Postdoctoral Research Associate
Stowers Institute for Medical Research
Post-Doctoral Research Fellow, Cancer Biology and Tumor Metastasis
Fred Hutchinson Cancer Research Center
Postdoctoral Researcher, Antibodies production
UBFC - Universite Bourgogne Franche-Comté
Research Fellow
National University of Singapore, Department of Pharmacy
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Heidelberg, Germany
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News & Views

 

Copper on the brain    pp638 - 639
Jason Rihel
doi:10.1038/s41589-018-0089-1

Linkers for protein degradation    pp639 - 640
Philip P. Chamberlain
doi:10.1038/s41589-018-0057-9

Vitamin B12 import is all about timing    pp640 - 641
Lutz Schmitt
doi:10.1038/s41589-018-0087-3

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Perspectives

 

Genome editing by natural and engineered CRISPR-associated nucleases    pp642 - 651
Wen Y. Wu, Joyce H. G. Lebbink, Roland Kanaar, Niels Geijsen & John van der Oost
doi:10.1038/s41589-018-0080-x

This Perspective explores the diversity, mechanisms and practical aspects of natural and engineered CRISPR-associated nucleases for genome engineering applications.

 

 

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Calls for nominations: 2018 John Maddox Prize for Standing up for Science

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Brief Communications

 

The anti-staphylococcal lipolanthines are ribosomally synthesized lipopeptides    pp652 - 654
Vincent Wiebach, Andi Mainz, Mary-Ann J. Siegert, Natalia A. Jungmann, Guillaume Lesquame et al.
doi:10.1038/s41589-018-0068-6

The antibacterial microvionin contains two new lanthipeptide modifications, a triamino-dicarboxylic acid (avionin) and an N-terminal guanidino fatty acid, that lead to the establishment of the lipolanthine natural product class.

 

 

Articles

 

Copper regulates rest-activity cycles through the locus coeruleus-norepinephrine system    pp655 - 663
Tong Xiao, Cheri M. Ackerman, Elizabeth C Carroll, Shang Jia, Adam Hoagland et al.
doi:10.1038/s41589-018-0062-z

Copper contributes to regulating zebrafish rest–activity cycles through the locus coeruleus system by modulating the biosynthesis of norepinephrine; brain copper deficiency leads to lower levels of both synaptic norepinephrine and daytime activity.

 

 

Computational redesign of enzymes for regio- and enantioselective hydroamination    pp664 - 670
Ruifeng Li, Hein J. Wijma, Lu Song, Yinglu Cui, Marleen Otzen et al.
doi:10.1038/s41589-018-0053-0

Computational protein design, without subsequent directed evolution, rapidly provides a set of aspartase variants capable of biocatalytic asymmetric addition of ammonia to substituted acrylates, producing various enantiopure β-amino acids.

 

 

Structural and genomic decoding of human and plant myristoylomes reveals a definitive recognition pattern    pp671 - 679
Benoit Castrec, Cyril Dian, Sarah Ciccone, Coralie L. Ebert, Willy V. Bienvenut et al.
doi:10.1038/s41589-018-0077-5

Aided by the solving of the structures of human NMT1 with substrate-mimicking peptides, mapping of human and Arabidopsis myristoylomes defines a myristoylation recognition motif and over 1,000 myristoylated protein targets.

 

 

Genome-wide mapping reveals that deoxyuridine is enriched in the human centromeric DNA    pp680 - 687
Xiaoting Shu, Menghao Liu, Zhike Lu, Chenxu Zhu, Haowei Meng et al.
doi:10.1038/s41589-018-0065-9

A genome-wide uracil profiling technology (termed “dU-seq”), based on selective labeling and biotin pull-down, reveals that uracil is enriched at the centromere of the human genome.

 

 

The Jumonji-C oxygenase JMJD7 catalyzes (3S)-lysyl hydroxylation of TRAFAC GTPases    pp688 - 695
Suzana Markolovic, Qinqin Zhuang, Sarah E. Wilkins, Charlotte D. Eaton, Martine I. Abboud et al.
doi:10.1038/s41589-018-0071-y

Structural, biochemical and cellular studies reveal JMJD7 to be a Jumonji-C oxygenase that catalyzes (3S)-lysyl hydroxylation of the translation factor family of GTPases, DRG1 and DRG2.

 

 

Functional assignment of multiple catabolic pathways for d-apiose    pp696 - 705
Michael S. Carter, Xinshuai Zhang, Hua Huang, Jason T. Bouvier, Brian San Francisco et al.
doi:10.1038/s41589-018-0067-7

A bioinformatic strategy beginning with solute-binding proteins involved in sugar transport led to the functional annotation of four previously unknown catabolic pathways of the branched pentose d-apiose.

 

 

Plasticity in binding confers selectivity in ligand-induced protein degradation    pp706 - 714
Radosław P. Nowak, Stephen L. DeAngelo, Dennis Buckley, Zhixiang He, Katherine A. Donovan et al.
doi:10.1038/s41589-018-0055-y

Selectivity of ligand-induced protein degradation and dimerization is conferred by plastic interprotein contacts. Computational protein–protein docking reveals the underlying interprotein contacts to inform the design of a BRD4 selective degrader.

 

 

Single-molecule probing of the conformational homogeneity of the ABC transporter BtuCD    pp715 - 722
Min Yang, Nurit Livnat Levanon, Burçin Acar, Burcu Aykac Fas, Gal Masrati et al.
doi:10.1038/s41589-018-0088-2

A single-molecule approach combined with molecular dynamics simulations to examine the conformational dynamics of the Escherichia coli ABC transporter BtuCD defines a coordinated sequence of events leading to unidirectional transport.

 

 

Generalized extracellular molecule sensor platform for programming cellular behavior    pp723 - 729
Leo Scheller, Tobias Strittmatter, David Fuchs, Daniel Bojar & Martin Fussenegger
doi:10.1038/s41589-018-0046-z

Engineered erythropoietin receptor scaffolds equipped with extracellular sensor domains and modular intracellular domains that couple to endogenous signaling pathways enable modular reprogramming of designer membrane-bound receptors.

 

 

Natural separation of the acyl-CoA ligase reaction results in a non-adenylating enzyme    pp730 - 737
Nan Wang, Jeffrey D. Rudolf, Liao-Bin Dong, Jerzy Osipiuk, Catherine Hatzos-Skintges et al.
doi:10.1038/s41589-018-0061-0

Functional and structural characterization of PtmA2 reveals that it is an unusual non-adenylating acyl-CoA ligase and part of a system wherein the canonical acyl-CoA ligase reaction is separated into two half-reactions performed by distinct enzymes.

 

 

A pathogenesis-related 10 protein catalyzes the final step in thebaine biosynthesis    pp738 - 743
Xue Chen, Jillian M. Hagel, Limei Chang, Joseph E. Tucker, Stacey A. Shiigi et al.
doi:10.1038/s41589-018-0059-7

Although the conversion of (7S)-salutaridinol 7-O-acetate to thebaine can occur spontaneously, the identification of a thebaine synthase enzyme that catalyzes the reaction indicates how nature avoids the formation of labile hydroxylated byproducts.

 

 

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