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Scientific Reports Biology Table of Contents e-alert: 29 May 2018

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Biological Sciences

Single-cell RNA sequencing reveals developmental heterogeneity of blastomeres during major genome activation in bovine embryos ▶


Ilaria Lavagi, Stefan Krebs, Kilian Simmet et al.


Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy ▶


M. Carolina Gallego Iradi, Judy C. Triplett, James D. Thomas et al.


High-Throughput Sequencing and Linkage Mapping of a Clownfish Genome Provide Insights on the Distribution of Molecular Players Involved in Sex Change ▶


Laura Casas, Pablo Saenz-Agudelo, Xabier Irigoien


Stirring does not make populations well mixed ▶


Francisco Herrerías-Azcué, Vicente Pérez-Muñuzuri, Tobias Galla


The influence of caging, bedding, and diet on the composition of the microbiota in different regions of the mouse gut ▶


Aaron C. Ericsson, Jonalyn Gagliardi, Delia Bouhan et al.


Zerumbone reduces proliferation of HCT116 colon cancer cells by inhibition of TNF-alpha ▶


Salam Pradeep Singh, Khumukcham Nongalleima, Ningthoujam Indrajit Singh et al.


The early effects of external and internal strategies on working memory updating training ▶


Matti Laine, Daniel Fellman, Otto Waris et al.


Identification of Insulin Receptor Splice Variant B in Neurons by in situ Detection in Human Brain Samples ▶


Brian Spencer, Logan Rank, Jeff Metcalf et al.


Interactions mediated by a public good transiently increase cooperativity in growing Pseudomonas putida metapopulations ▶


Felix Becker, Karl Wienand, Matthias Lechner et al.


Prediction and characterization of human ageing-related proteins by using machine learning ▶


Csaba Kerepesi, Bálint Daróczy, Ádám Sturm et al.


Application of maltose as energy source in protein-free CHO-K1 culture to improve the production of recombinant monoclonal antibody ▶


Dawn Sow Zong Leong, Brian Kah Hui Teo, Janice Gek Ling Tan et al.


Cytokine and Chemokine Profiling in Patients with Hand, Foot and Mouth Disease in Singapore and Malaysia ▶


Fiona Mei Shan Teo, Min Nyo, Anng Anng Wong et al.


Interplay between conformational selection and zymogen activation ▶


Pradipta Chakraborty, Laura Acquasaliente, Leslie A. Pelc et al.


Marker-assisted introgression of three dominant blast resistance genes into an aromatic rice cultivar Mushk Budji ▶


Gazala Hassan Khan, Asif Bashir Shikari, Rakesh Vaishnavi et al.


The Use of Metabolomics and Inflammatory Mediator Profiling Provides a Novel Approach to Identifying Pediatric Appendicitis in the Emergency Department ▶


Nusrat S. Shommu, Craig N. Jenne, Jaime Blackwood et al.


Patient-derived conditionally reprogrammed cells maintain intra-tumor genetic heterogeneity ▶


Bruna R. S. Correa, Joanna Hu, Luiz O. F. Penalva et al.


Duck plague virus Glycoprotein J is functional but slightly impaired in viral replication and cell-to-cell spread ▶


Yu You, Tian Liu, Mingshu Wang et al.


A Triplet Parallelizing Spiral Microfluidic Chip for Continuous Separation of Tumor Cells ▶


Hongmei Chen


Insights into the ubiquitin-proteasome system of human embryonic stem cells ▶


Isabel Saez, Seda Koyuncu, Ricardo Gutierrez-Garcia et al.


Ecrg4 peptide is the ligand of multiple scavenger receptors ▶


Tetsuo Moriguchi, Shuji Takeda, Shinzo Iwashita et al.


A global mismatch in the protection of multiple marine biodiversity components and ecosystem services ▶


Martin Lindegren, Ben G. Holt, Brian R. MacKenzie et al.


Isolation of levoglucosan-utilizing thermophilic bacteria ▶


Shintaro Iwazaki, Hirokazu Hirai, Norihisa Hamaguchi et al.


BASIS: High-performance bioinformatics platform for processing of large-scale mass spectrometry imaging data in chemically augmented histology ▶


Kirill Veselkov, Jonathan Sleeman, Emmanuelle Claude et al.


Tadpoles respond to background colour under threat ▶


Paula Cabral Eterovick, Izabela Santos Mendes, Jéssica Stephanie Kloh et al.


1H NMR-based metabolomics reveals the effect of maternal habitual dietary patterns on human amniotic fluid profile ▶


Maria Fotiou, Charalambos Fotakis, Foteini Tsakoumaki et al.


Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress ▶


Neelam Soda, Brijesh K. Gupta, Khalid Anwar et al.


Cerebral blood flow predicts differential neurotransmitter activity ▶


Juergen Dukart, Štefan Holiga, Christopher Chatham et al.


Increased Glutamine Consumption in Cisplatin-Resistant Cells Has a Negative Impact on Cell Growth ▶


Guihua Duan, Mengyue Shi, Lijuan Xie et al.


Interaction between alcohol consumption and methylenetetrahydrofolate reductase polymorphisms in thyroid cancer risk: National Cancer Center cohort in Korea ▶


Sarah Yang, Jeonghee Lee, Yoon Park et al.


Plant-made Salmonella bacteriocins salmocins for control of Salmonella pathovars ▶


Tobias Schneider, Simone Hahn-Löbmann, Anett Stephan et al.


The effects of angiotensin receptor neprilysin inhibition by sacubitril/valsartan on adipose tissue transcriptome and protein expression in obese hypertensive patients ▶


R. Stinkens, B. W. van der Kolk, J. Jordan et al.


SESN2 negatively regulates cell proliferation and casein synthesis by inhibition the amino acid-mediated mTORC1 pathway in cow mammary epithelial cells ▶


Chaochao Luo, Shengguo Zhao, Muchen Zhang et al.


Mahanine drives pancreatic adenocarcinoma cells into endoplasmic reticular stress-mediated apoptosis through modulating sialylation process and Ca2+-signaling ▶


Sayantani Sarkar Bhattacharya, Chandan Mandal, Reinhard Schwartz Albiez et al.


In vivo virulence of Mycobacterium tuberculosis depends on a single homologue of the LytR-CpsA-Psr proteins ▶


S. Malm, S. Maaß, U. E. Schaible et al.


Genome-wide identification and expression analysis of GRAS family transcription factors in tea plant (Camellia sinensis) ▶


Yong-Xin Wang, Zhi-Wei Liu, Zhi-Jun Wu et al.


Multi-modal survey of Adélie penguin mega-colonies reveals the Danger Islands as a seabird hotspot ▶


Alex Borowicz, Philip McDowall, Casey Youngflesh et al.


Exposure of Insects to Radio-Frequency Electromagnetic Fields from 2 to 120 GHz ▶


Arno Thielens, Duncan Bell, David B. Mortimore et al.


miR-27b regulates myogenic proliferation and differentiation by targeting Pax3 in goat ▶


Ying-Hui Ling, Meng-Hua Sui, Qi Zheng et al.


Acceleration of phenological advance and warming with latitude over the past century ▶


Eric Post, Byron A. Steinman, Michael E. Mann


Development of an Injectable Slow-Release Metformin Formulation and Evaluation of Its Potential Antitumor Effects ▶


Sara Baldassari, Agnese Solari, Guendalina Zuccari et al.


Identification of genomic differences among peripheral arterial beds in atherosclerotic and healthy arteries ▶


Marja Steenman, Olivier Espitia, Blandine Maurel et al.


Next generation sequencing reveals changes of the γδ T cell receptor repertoires in patients with pulmonary tuberculosis ▶


Chaofei Cheng, Bei Wang, Lei Gao et al.


A CREB2-targeting microRNA is required for long-term memory after single-trial learning ▶


Sergei A. Korneev, Dimitris V. Vavoulis, Souvik Naskar et al.


Long-lasting ergot lipids as new biomarkers for assessing the presence of cereals and cereal products in archaeological vessels ▶


Jeannette J. Lucejko, Jacopo La Nasa, Francesca Porta et al.


Green synthesis of gold nanoparticles by thermophilic filamentous fungi ▶


Zsófia Molnár, Viktória Bódai, George Szakacs et al.


Identifying inhibitors of the Leishmania inositol phosphorylceramide synthase with antiprotozoal activity using a yeast-based assay and ultra-high throughput screening platform ▶


Jennifer L. Norcliffe, John G. Mina, Emilio Alvarez et al.


Improved isolation strategies to increase the yield and purity of human urinary exosomes for biomarker discovery ▶


Ali Hashemi Gheinani, Mike Vögeli, Ulrich Baumgartner et al.


Culture-free Antibiotic-susceptibility Determination From Single-bacterium Raman Spectra ▶


A. Novelli-Rousseau, I. Espagnon, D. Filiputti et al.


Structural and functional studies on Pseudomonas aeruginosa DspI: implications for its role in DSF biosynthesis ▶


Li Liu, Tao Li, Xing-Jun Cheng et al.


Loss of PTEN-assisted G2/M checkpoint impedes homologous recombination repair and enhances radio-curability and PARP inhibitor treatment response in prostate cancer ▶


W. Y. Mansour, P. Tennstedt, J. Volquardsen et al.


Antimycobacterial drug discovery using Mycobacteria-infected amoebae identifies anti-infectives and new molecular targets ▶


Valentin Trofimov, Sébastien Kicka, Sabrina Mucaria et al.


A Mathematical Model of the Phosphoinositide Pathway ▶


Daniel V. Olivença, Inna Uliyakina, Luis L. Fonseca et al.


Deletion of the Syncytin A receptor Ly6e impairs syncytiotrophoblast fusion and placental morphogenesis causing embryonic lethality in mice ▶


Michael B. Langford, Jennifer E. Outhwaite, Martha Hughes et al.


Lamprey Prohibitin2 Arrest G2/M Phase Transition of HeLa Cells through Down-regulating Expression and Phosphorylation Level of Cell Cycle Proteins ▶


Ying Shi, Sicheng Guo, Ying Wang et al.


Biological and mechanical interplay at the Macro- and Microscales Modulates the Cell-Niche Fate ▶


Udi Sarig, Hadar Sarig, Aleksander Gora et al.


Mass spectrometry and multivariate analysis to classify cervical intraepithelial neoplasia from blood plasma: an untargeted lipidomic study ▶


Ana C. O. Neves, Camilo L. M. Morais, Thais P. P. Mendes et al.


High Sensitivity of T-Ray for Thrombus Sensing ▶


Chi-Kuang Sun, Hui-Yuan Chen, Tzu-Fang Tseng et al.


Central s-resistin deficiency ameliorates hypothalamic inflammation and increases whole body insulin sensitivity ▶


María Rodríguez, Cristina Pintado, Eduardo Moltó et al.


Common variants of ARID1A and KAT2B are associated with obesity in Indian adolescents ▶


Anil K. Giri, Vaisak Parekatt, Om Prakash Dwivedi et al.


Essential oils and their components are a class of antifungals with potent vapour-phase-mediated anti-Candida activity ▶


Adam F. Feyaerts, Lotte Mathé, Walter Luyten et al.


Historical domestication-driven population expansion of the dung beetle Gymnopleurus mopsus (Coleoptera: Scarabaeidae) from its last refuge in Mongolia ▶


Ji Hyoun Kang, Chang Seob Lim, Sung Hwan Park et al.


Global phenotypic characterisation of human platelet lysate expanded MSCs by high-throughput flow cytometry ▶


Monica Reis, David McDonald, Lindsay Nicholson et al.


Structure based function-annotation of hypothetical protein MGG_01005 from Magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3 ▶


Guorui Li, Jinguang Huang, Jun Yang et al.


Trichostatin A reverses the chemoresistance of lung cancer with high IGFBP2 expression through enhancing autophagy ▶


Dongfang Tang, Ruyong Yao, Dandan Zhao et al.


Noise Source and Individual Physiology Mediate Effectiveness of Bird Songs Adjusted to Anthropogenic Noise ▶


Claire M. Curry, Paulson G. Des Brisay, Patricia Rosa et al.


Assessing the Heterogeneity of the Fc-Glycan of a Therapeutic Antibody Using an engineered FcγReceptor IIIa-Immobilized Column ▶


Masato Kiyoshi, Jose M. M. Caaveiro, Minoru Tada et al.


Significance of risk polymorphisms for depression depends on stress exposure ▶


Xenia Gonda, Gabor Hullam, Peter Antal et al.


Transcriptome analysis provides insights into xylogenesis formation in Moso bamboo (Phyllostachys edulis) shoot ▶


Hui Zhang, Ye-qing Ying, Jie Wang et al.


Metabolic Reprogramming in Amyotrophic Lateral Sclerosis ▶


M. Szelechowski, N. Amoedo, E. Obre et al.


Metformin-induced caveolin-1 expression promotes T-DM1 drug efficacy in breast cancer cells ▶


Yuan-Chiang Chung, Ching-Ming Chang, Wan-Chen Wei et al.


Assembly, growth and conductive properties of tellurium nanorods produced by Rhodococcus aetherivorans BCP1 ▶


Alessandro Presentato, Elena Piacenza, Ali Darbandi et al.


Sophora flavescens protects against mycobacterial Trehalose Dimycolate-induced lung granuloma by inhibiting inflammation and infiltration of macrophages ▶


Dehua Liu, Ben Chung-Lap Chan, Ling Cheng et al.


A Highly Sensitive Detection System based on Proximity-dependent Hybridization with Computer-aided Affinity Maturation of a scFv Antibody ▶


Zhiheng Wang, Yan Li, Wenbin Liang et al.


The combined influence of body size and density on cohesive sediment resuspension by bioturbators ▶


Francesco Cozzoli, Tjeerd J. Bouma, Pauline Ottolander et al.


Antimicrobial mechanisms due to hyperpolarisation induced by nanoporous Au ▶


Naoki Miyazawa, Masataka Hakamada, Mamoru Mabuchi


Analysis of (CAG)n expansion in ATXN1, ATXN2 and ATXN3 in Chinese patients with multiple system atrophy ▶


X. Zhou, C. Wang, D. Ding et al.


Functionally distinct smiles elicit different physiological responses in an evaluative context ▶


Jared D. Martin, Heather C. Abercrombie, Eva Gilboa-Schechtman et al.


Human milk oligosaccharides protect against the development of autoimmune diabetes in NOD-mice ▶


Ling Xiao, Belinda van’t Land, Phillip A. Engen et al.


Melanopsin photoreception contributes to human visual detection, temporal and colour processing ▶


Andrew J. Zele, Beatrix Feigl, Prakash Adhikari et al.


Novel and Haplotype Specific MicroRNAs Encoded by the Major Histocompatibility Complex ▶


P. M. Clark, N. Chitnis, M. Shieh et al.


Bufalin suppresses hepatocarcinogenesis by targeting β-catenin/TCF signaling via cell cycle-related kinase ▶


Zhuo Yu, Hai Feng, Xuehua Sun et al.


Transcriptional activation of zebrafish fads2 promoter and its transient transgene expression in yolk syncytial layer of zebrafish embryos ▶


Shu-Shen Tay, Meng-Kiat Kuah, Alexander Chong Shu-Chien


Individualistic values are related to an increase in the outbreaks of infectious diseases and zoonotic diseases ▶


Serge Morand, Bruno A. Walther


Degradation shaped bacterial and archaeal communities with predictable taxa and their association patterns in Zoige wetland at Tibet plateau ▶


Yunfu Gu, Yan Bai, Quanju Xiang et al.


The DREADD agonist clozapine N-oxide (CNO) is reverse-metabolized to clozapine and produces clozapine-like interoceptive stimulus effects in rats and mice ▶


Daniel F. Manvich, Kevin A. Webster, Stephanie L. Foster et al.


The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice ▶


Osvaldo Filipe, David De Vleesschauwer, Ashley Haeck et al.


Echinacoside Increases Sperm Quantity in Rats by Targeting the Hypothalamic Androgen Receptor ▶


Zhihui Jiang, Bo Zhou, Xinping Li et al.


Disturbance Regimes Drive The Diversity of Regional Floristic Pools Across Guianan Rainforest Landscapes ▶


Stéphane Guitet, Daniel Sabatier, Olivier Brunaux et al.


Preparation and Imaging Investigation of Dual-targeted C3F8-filled PLGA Nanobubbles as a Novel Ultrasound Contrast Agent for Breast Cancer ▶


Jing Du, Xiao-Yu Li, He Hu et al.


Spatial summation across the visual field in strabismic and anisometropic amblyopia ▶


Shindy Je, Fergal A. Ennis, J. Margaret Woodhouse et al.


Large-scale patterning of single cells and cell clusters in hydrogels ▶


Xiangyu Gong, Kristen L. Mills


Lack of effects of simvastatin on smoking cessation in humans: A double-blind, randomized, placebo-controlled clinical study ▶


Isabelle Ingrand, Marcello Solinas, Pierre Ingrand et al.


Introgression of a functional epigenetic OsSPL14 WFP allele into elite indica rice genomes greatly improved panicle traits and grain yield ▶


Sung-Ryul Kim, Joie M. Ramos, Rona Joy M. Hizon et al.


Large XPF-dependent deletions following misrepair of a DNA double strand break are prevented by the RNA:DNA helicase Senataxin ▶


Julien Brustel, Zuzanna Kozik, Natalia Gromak et al.


Preoperative Heart Rate Variability as Predictors of Vagus Nerve Stimulation Outcome in Patients with Drug-resistant Epilepsy ▶


Hong-Yun Liu, Zhao Yang, Fan-Gang Meng et al.


Frontal cortex function as derived from hierarchical predictive coding ▶


William H. Alexander, Joshua W. Brown


Metabolic characterization of directly reprogrammed renal tubular epithelial cells (iRECs) ▶


Simon Lagies, Roman Pichler, Michael M. Kaminski et al.


A preliminary study on efficacy of rupatadine for the treatment of acute dengue infection ▶


Gathsaurie Neelika Malavige, Ananda Wijewickrama, Samitha Fernando et al.


Adenovirus-prime and baculovirus-boost heterologous immunization achieves sterile protection against malaria sporozoite challenge in a murine model ▶


Kunitaka Yoshida, Mitsuhiro Iyori, Andrew M. Blagborough et al.


Fatty Acid Supplementation Reverses the Small Colony Variant Phenotype in Triclosan-Adapted Staphylococcus aureus: Genetic, Proteomic and Phenotypic Analyses ▶


Abdulrahman S. Bazaid, Sarah Forbes, Gavin J. Humphreys et al.


Critical role of sigma-1 receptors in central neuropathic pain-related behaviours after mild spinal cord injury in mice ▶


Sílvia Castany, Georgia Gris, José Miguel Vela et al.


Genetic variants in two pathways influence serum urate levels and gout risk: a systematic pathway analysis ▶


Zheng Dong, Jingru Zhou, Xia Xu et al.


Conditional knockout of NaV1.6 in adult mice ameliorates neuropathic pain ▶


Lubin Chen, Jianying Huang, Peng Zhao et al.


Exogenous hydrogen sulfide gas does not induce hypothermia in normoxic mice ▶


Sebastiaan D. Hemelrijk, Marcel C. Dirkes, Marit H. N. van Velzen et al.


Long-term nutrient addition increased CH4 emission from a bog through direct and indirect effects ▶


Sari Juutinen, Tim R. Moore, Jill L. Bubier et al.


The use of SWATH to analyse the dynamic changes of bacterial proteome of carbapanemase-producing Escherichia coli under antibiotic pressure ▶


Hanna E. Sidjabat, Jolene Gien, David Kvaskoff et al.


Lateral attachment of kinetochores to microtubules is enriched in prometaphase rosette and facilitates chromosome alignment and bi-orientation establishment ▶


Go Itoh, Masanori Ikeda, Kenji Iemura et al.


An allosteric link connecting the lipid-protein interface to the gating of the nicotinic acetylcholine receptor ▶


Jaimee A. Domville, John E. Baenziger


Intramembranous ossification and endochondral ossification are impaired differently between glucocorticoid-induced osteoporosis and estrogen deficiency-induced osteoporosis ▶


Hongyang Zhang, Xiaojuan Shi, Long Wang et al.


Fat accretion measurements strengthen the relationship between feed conversion efficiency and Nitrogen isotopic discrimination while rumen microbial genes contribute little ▶


Sarah J. Meale, Marc D. Auffret, Mick Watson et al.


Application of Bld-1-Embedded Elastin-Like Polypeptides in Tumor Targeting ▶


Vijaya Sarangthem, Eun A. Cho, Aena Yi et al.


Recognition motif and mechanism of ripening inhibitory peptides in plant hormone receptor ETR1 ▶


Dalibor Milić, Markus Dick, Daniel Mulnaes et al.


Evaluation of three methods for biomass estimation in small invertebrates, using three large disparate parasite species as model organisms ▶


Cristina Llopis-Belenguer, Isabel Blasco-Costa, Juan Antonio Balbuena


Loss of mRNA surveillance pathways results in widespread protein aggregation ▶


Nur Hidayah Jamar, Paraskevi Kritsiligkou, Chris M. Grant


Solution structure and dynamics of anti-CRISPR AcrIIA4, the Cas9 inhibitor ▶


Iktae Kim, Migyeong Jeong, Donghyun Ka et al.


Landscape of the spliced leader trans-splicing mechanism in Schistosoma mansoni ▶


Mariana Boroni, Michael Sammeth, Sandra Grossi Gava et al.


Functional innate immunity restricts Hepatitis C Virus infection in induced pluripotent stem cell–derived hepatocytes ▶


Anja Schöbel, Kathrin Rösch, Eva Herker


Support for viral persistence in bats from age-specific serology and models of maternal immunity ▶


Alison J. Peel, Kate S. Baker, David T. S. Hayman et al.


Engineering Axl specific CAR and SynNotch receptor for cancer therapy ▶


Jang Hwan Cho, Atsushi Okuma, Dalal Al-Rubaye et al.


PDE4D regulates Spine Plasticity and Memory in the Retrosplenial Cortex ▶


Karsten Baumgärtel, Andrea Green, Diana Hornberger et al.


Boat noise impacts risk assessment in a coral reef fish but effects depend on engine type ▶


Mark I. McCormick, Bridie J. M. Allan, Harry Harding et al.


Multipotent Adult Progenitor Cells Support Lymphatic Regeneration at Multiple Anatomical Levels during Wound Healing and Lymphedema ▶


Manu Beerens, Xabier L. Aranguren, Benoit Hendrickx et al.


Pathways of cellular internalisation of liposomes delivered siRNA and effects on siRNA engagement with target mRNA and silencing in cancer cells ▶


Abdullah Alshehri, Anna Grabowska, Snow Stolnik


Chimeric peptide EP45 as a dual agonist at GLP-1 and NPY2R receptors ▶


Oleg G. Chepurny, Ron L. Bonaccorso, Colin A. Leech et al.

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