Scientific Reports Biology Table of Contents e-alert: 29 May 2018

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29 May 2018       •Visit Scientific Reports •Submit your manuscript to Scientific Reports     Welcome to your Table of Contents e-alert for Scientific Reports         Biological Sciences               Single-cell RNA sequencing reveals developmental heterogeneity of blastomeres during major genome activation in bovine embryos ▶     Ilaria Lavagi, Stefan Krebs, Kilian Simmet et al.             Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy ▶     M. Carolina Gallego Iradi, Judy C. Triplett, James D. Thomas et al.             High-Throughput Sequencing and Linkage Mapping of a Clownfish Genome Provide Insights on the Distribution of Molecular Players Involved in Sex Change ▶     Laura Casas, Pablo Saenz-Agudelo, Xabier Irigoien             Stirring does not make populations well mixed ▶     Francisco Herrerías-Azcué, Vicente Pérez-Muñuzuri, Tobias Galla             The influence of caging, bedding, and diet on the composition of the microbiota in different regions of the mouse gut ▶     Aaron C. Ericsson, Jonalyn Gagliardi, Delia Bouhan et al.             Zerumbone reduces proliferation of HCT116 colon cancer cells by inhibition of TNF-alpha ▶     Salam Pradeep Singh, Khumukcham Nongalleima, Ningthoujam Indrajit Singh et al.             The early effects of external and internal strategies on working memory updating training ▶     Matti Laine, Daniel Fellman, Otto Waris et al.             Identification of Insulin Receptor Splice Variant B in Neurons by in situ Detection in Human Brain Samples ▶     Brian Spencer, Logan Rank, Jeff Metcalf et al.             Interactions mediated by a public good transiently increase cooperativity in growing Pseudomonas putida metapopulations ▶     Felix Becker, Karl Wienand, Matthias Lechner et al.             Prediction and characterization of human ageing-related proteins by using machine learning ▶     Csaba Kerepesi, Bálint Daróczy, Ádám Sturm et al.             Application of maltose as energy source in protein-free CHO-K1 culture to improve the production of recombinant monoclonal antibody ▶     Dawn Sow Zong Leong, Brian Kah Hui Teo, Janice Gek Ling Tan et al.             Cytokine and Chemokine Profiling in Patients with Hand, Foot and Mouth Disease in Singapore and Malaysia ▶     Fiona Mei Shan Teo, Min Nyo, Anng Anng Wong et al.             Interplay between conformational selection and zymogen activation ▶     Pradipta Chakraborty, Laura Acquasaliente, Leslie A. Pelc et al.             Marker-assisted introgression of three dominant blast resistance genes into an aromatic rice cultivar Mushk Budji ▶     Gazala Hassan Khan, Asif Bashir Shikari, Rakesh Vaishnavi et al.             The Use of Metabolomics and Inflammatory Mediator Profiling Provides a Novel Approach to Identifying Pediatric Appendicitis in the Emergency Department ▶     Nusrat S. Shommu, Craig N. Jenne, Jaime Blackwood et al.             Patient-derived conditionally reprogrammed cells maintain intra-tumor genetic heterogeneity ▶     Bruna R. S. Correa, Joanna Hu, Luiz O. F. Penalva et al.             Duck plague virus Glycoprotein J is functional but slightly impaired in viral replication and cell-to-cell spread ▶     Yu You, Tian Liu, Mingshu Wang et al.             A Triplet Parallelizing Spiral Microfluidic Chip for Continuous Separation of Tumor Cells ▶     Hongmei Chen             Insights into the ubiquitin-proteasome system of human embryonic stem cells ▶     Isabel Saez, Seda Koyuncu, Ricardo Gutierrez-Garcia et al.             Ecrg4 peptide is the ligand of multiple scavenger receptors ▶     Tetsuo Moriguchi, Shuji Takeda, Shinzo Iwashita et al.             A global mismatch in the protection of multiple marine biodiversity components and ecosystem services ▶     Martin Lindegren, Ben G. Holt, Brian R. MacKenzie et al.             Isolation of levoglucosan-utilizing thermophilic bacteria ▶     Shintaro Iwazaki, Hirokazu Hirai, Norihisa Hamaguchi et al.             BASIS: High-performance bioinformatics platform for processing of large-scale mass spectrometry imaging data in chemically augmented histology ▶     Kirill Veselkov, Jonathan Sleeman, Emmanuelle Claude et al.             Tadpoles respond to background colour under threat ▶     Paula Cabral Eterovick, Izabela Santos Mendes, Jéssica Stephanie Kloh et al.             1H NMR-based metabolomics reveals the effect of maternal habitual dietary patterns on human amniotic fluid profile ▶     Maria Fotiou, Charalambos Fotakis, Foteini Tsakoumaki et al.             Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress ▶     Neelam Soda, Brijesh K. Gupta, Khalid Anwar et al.             Cerebral blood flow predicts differential neurotransmitter activity ▶     Juergen Dukart, Štefan Holiga, Christopher Chatham et al.             Increased Glutamine Consumption in Cisplatin-Resistant Cells Has a Negative Impact on Cell Growth ▶     Guihua Duan, Mengyue Shi, Lijuan Xie et al.             Interaction between alcohol consumption and methylenetetrahydrofolate reductase polymorphisms in thyroid cancer risk: National Cancer Center cohort in Korea ▶     Sarah Yang, Jeonghee Lee, Yoon Park et al.             Plant-made Salmonella bacteriocins salmocins for control of Salmonella pathovars ▶     Tobias Schneider, Simone Hahn-Löbmann, Anett Stephan et al.             The effects of angiotensin receptor neprilysin inhibition by sacubitril/valsartan on adipose tissue transcriptome and protein expression in obese hypertensive patients ▶     R. Stinkens, B. W. van der Kolk, J. Jordan et al.             SESN2 negatively regulates cell proliferation and casein synthesis by inhibition the amino acid-mediated mTORC1 pathway in cow mammary epithelial cells ▶     Chaochao Luo, Shengguo Zhao, Muchen Zhang et al.             Mahanine drives pancreatic adenocarcinoma cells into endoplasmic reticular stress-mediated apoptosis through modulating sialylation process and Ca2+-signaling ▶     Sayantani Sarkar Bhattacharya, Chandan Mandal, Reinhard Schwartz Albiez et al.             In vivo virulence of Mycobacterium tuberculosis depends on a single homologue of the LytR-CpsA-Psr proteins ▶     S. Malm, S. Maaß, U. E. Schaible et al.             Genome-wide identification and expression analysis of GRAS family transcription factors in tea plant (Camellia sinensis) ▶     Yong-Xin Wang, Zhi-Wei Liu, Zhi-Jun Wu et al.             Multi-modal survey of Adélie penguin mega-colonies reveals the Danger Islands as a seabird hotspot ▶     Alex Borowicz, Philip McDowall, Casey Youngflesh et al.             Exposure of Insects to Radio-Frequency Electromagnetic Fields from 2 to 120 GHz ▶     Arno Thielens, Duncan Bell, David B. Mortimore et al.             miR-27b regulates myogenic proliferation and differentiation by targeting Pax3 in goat ▶     Ying-Hui Ling, Meng-Hua Sui, Qi Zheng et al.             Acceleration of phenological advance and warming with latitude over the past century ▶     Eric Post, Byron A. Steinman, Michael E. Mann             Development of an Injectable Slow-Release Metformin Formulation and Evaluation of Its Potential Antitumor Effects ▶     Sara Baldassari, Agnese Solari, Guendalina Zuccari et al.             Identification of genomic differences among peripheral arterial beds in atherosclerotic and healthy arteries ▶     Marja Steenman, Olivier Espitia, Blandine Maurel et al.             Next generation sequencing reveals changes of the γδ T cell receptor repertoires in patients with pulmonary tuberculosis ▶     Chaofei Cheng, Bei Wang, Lei Gao et al.             A CREB2-targeting microRNA is required for long-term memory after single-trial learning ▶     Sergei A. Korneev, Dimitris V. Vavoulis, Souvik Naskar et al.             Long-lasting ergot lipids as new biomarkers for assessing the presence of cereals and cereal products in archaeological vessels ▶     Jeannette J. Lucejko, Jacopo La Nasa, Francesca Porta et al.             Green synthesis of gold nanoparticles by thermophilic filamentous fungi ▶     Zsófia Molnár, Viktória Bódai, George Szakacs et al.             Identifying inhibitors of the Leishmania inositol phosphorylceramide synthase with antiprotozoal activity using a yeast-based assay and ultra-high throughput screening platform ▶     Jennifer L. Norcliffe, John G. Mina, Emilio Alvarez et al.             Improved isolation strategies to increase the yield and purity of human urinary exosomes for biomarker discovery ▶     Ali Hashemi Gheinani, Mike Vögeli, Ulrich Baumgartner et al.             Culture-free Antibiotic-susceptibility Determination From Single-bacterium Raman Spectra ▶     A. Novelli-Rousseau, I. Espagnon, D. Filiputti et al.             Structural and functional studies on Pseudomonas aeruginosa DspI: implications for its role in DSF biosynthesis ▶     Li Liu, Tao Li, Xing-Jun Cheng et al.             Loss of PTEN-assisted G2/M checkpoint impedes homologous recombination repair and enhances radio-curability and PARP inhibitor treatment response in prostate cancer ▶     W. Y. Mansour, P. Tennstedt, J. Volquardsen et al.             Antimycobacterial drug discovery using Mycobacteria-infected amoebae identifies anti-infectives and new molecular targets ▶     Valentin Trofimov, Sébastien Kicka, Sabrina Mucaria et al.             A Mathematical Model of the Phosphoinositide Pathway ▶     Daniel V. Olivença, Inna Uliyakina, Luis L. Fonseca et al.             Deletion of the Syncytin A receptor Ly6e impairs syncytiotrophoblast fusion and placental morphogenesis causing embryonic lethality in mice ▶     Michael B. Langford, Jennifer E. Outhwaite, Martha Hughes et al.             Lamprey Prohibitin2 Arrest G2/M Phase Transition of HeLa Cells through Down-regulating Expression and Phosphorylation Level of Cell Cycle Proteins ▶     Ying Shi, Sicheng Guo, Ying Wang et al.             Biological and mechanical interplay at the Macro- and Microscales Modulates the Cell-Niche Fate ▶     Udi Sarig, Hadar Sarig, Aleksander Gora et al.             Mass spectrometry and multivariate analysis to classify cervical intraepithelial neoplasia from blood plasma: an untargeted lipidomic study ▶     Ana C. O. Neves, Camilo L. M. Morais, Thais P. P. Mendes et al.             High Sensitivity of T-Ray for Thrombus Sensing ▶     Chi-Kuang Sun, Hui-Yuan Chen, Tzu-Fang Tseng et al.             Central s-resistin deficiency ameliorates hypothalamic inflammation and increases whole body insulin sensitivity ▶     María Rodríguez, Cristina Pintado, Eduardo Moltó et al.             Common variants of ARID1A and KAT2B are associated with obesity in Indian adolescents ▶     Anil K. Giri, Vaisak Parekatt, Om Prakash Dwivedi et al.             Essential oils and their components are a class of antifungals with potent vapour-phase-mediated anti-Candida activity ▶     Adam F. Feyaerts, Lotte Mathé, Walter Luyten et al.             Historical domestication-driven population expansion of the dung beetle Gymnopleurus mopsus (Coleoptera: Scarabaeidae) from its last refuge in Mongolia ▶     Ji Hyoun Kang, Chang Seob Lim, Sung Hwan Park et al.             Global phenotypic characterisation of human platelet lysate expanded MSCs by high-throughput flow cytometry ▶     Monica Reis, David McDonald, Lindsay Nicholson et al.             Structure based function-annotation of hypothetical protein MGG_01005 from Magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3 ▶     Guorui Li, Jinguang Huang, Jun Yang et al.             Trichostatin A reverses the chemoresistance of lung cancer with high IGFBP2 expression through enhancing autophagy ▶     Dongfang Tang, Ruyong Yao, Dandan Zhao et al.             Noise Source and Individual Physiology Mediate Effectiveness of Bird Songs Adjusted to Anthropogenic Noise ▶     Claire M. Curry, Paulson G. Des Brisay, Patricia Rosa et al.             Assessing the Heterogeneity of the Fc-Glycan of a Therapeutic Antibody Using an engineered FcγReceptor IIIa-Immobilized Column ▶     Masato Kiyoshi, Jose M. M. Caaveiro, Minoru Tada et al.             Significance of risk polymorphisms for depression depends on stress exposure ▶     Xenia Gonda, Gabor Hullam, Peter Antal et al.             Transcriptome analysis provides insights into xylogenesis formation in Moso bamboo (Phyllostachys edulis) shoot ▶     Hui Zhang, Ye-qing Ying, Jie Wang et al.             Metabolic Reprogramming in Amyotrophic Lateral Sclerosis ▶     M. Szelechowski, N. Amoedo, E. Obre et al.             Metformin-induced caveolin-1 expression promotes T-DM1 drug efficacy in breast cancer cells ▶     Yuan-Chiang Chung, Ching-Ming Chang, Wan-Chen Wei et al.             Assembly, growth and conductive properties of tellurium nanorods produced by Rhodococcus aetherivorans BCP1 ▶     Alessandro Presentato, Elena Piacenza, Ali Darbandi et al.             Sophora flavescens protects against mycobacterial Trehalose Dimycolate-induced lung granuloma by inhibiting inflammation and infiltration of macrophages ▶     Dehua Liu, Ben Chung-Lap Chan, Ling Cheng et al.             A Highly Sensitive Detection System based on Proximity-dependent Hybridization with Computer-aided Affinity Maturation of a scFv Antibody ▶     Zhiheng Wang, Yan Li, Wenbin Liang et al.             The combined influence of body size and density on cohesive sediment resuspension by bioturbators ▶     Francesco Cozzoli, Tjeerd J. Bouma, Pauline Ottolander et al.             Antimicrobial mechanisms due to hyperpolarisation induced by nanoporous Au ▶     Naoki Miyazawa, Masataka Hakamada, Mamoru Mabuchi             Analysis of (CAG)n expansion in ATXN1, ATXN2 and ATXN3 in Chinese patients with multiple system atrophy ▶     X. Zhou, C. Wang, D. Ding et al.             Functionally distinct smiles elicit different physiological responses in an evaluative context ▶     Jared D. Martin, Heather C. Abercrombie, Eva Gilboa-Schechtman et al.             Human milk oligosaccharides protect against the development of autoimmune diabetes in NOD-mice ▶     Ling Xiao, Belinda van’t Land, Phillip A. Engen et al.             Melanopsin photoreception contributes to human visual detection, temporal and colour processing ▶     Andrew J. Zele, Beatrix Feigl, Prakash Adhikari et al.             Novel and Haplotype Specific MicroRNAs Encoded by the Major Histocompatibility Complex ▶     P. M. Clark, N. Chitnis, M. Shieh et al.             Bufalin suppresses hepatocarcinogenesis by targeting β-catenin/TCF signaling via cell cycle-related kinase ▶     Zhuo Yu, Hai Feng, Xuehua Sun et al.             Transcriptional activation of zebrafish fads2 promoter and its transient transgene expression in yolk syncytial layer of zebrafish embryos ▶     Shu-Shen Tay, Meng-Kiat Kuah, Alexander Chong Shu-Chien             Individualistic values are related to an increase in the outbreaks of infectious diseases and zoonotic diseases ▶     Serge Morand, Bruno A. Walther             Degradation shaped bacterial and archaeal communities with predictable taxa and their association patterns in Zoige wetland at Tibet plateau ▶     Yunfu Gu, Yan Bai, Quanju Xiang et al.             The DREADD agonist clozapine N-oxide (CNO) is reverse-metabolized to clozapine and produces clozapine-like interoceptive stimulus effects in rats and mice ▶     Daniel F. Manvich, Kevin A. Webster, Stephanie L. Foster et al.             The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice ▶     Osvaldo Filipe, David De Vleesschauwer, Ashley Haeck et al.             Echinacoside Increases Sperm Quantity in Rats by Targeting the Hypothalamic Androgen Receptor ▶     Zhihui Jiang, Bo Zhou, Xinping Li et al.             Disturbance Regimes Drive The Diversity of Regional Floristic Pools Across Guianan Rainforest Landscapes ▶     Stéphane Guitet, Daniel Sabatier, Olivier Brunaux et al.             Preparation and Imaging Investigation of Dual-targeted C3F8-filled PLGA Nanobubbles as a Novel Ultrasound Contrast Agent for Breast Cancer ▶     Jing Du, Xiao-Yu Li, He Hu et al.             Spatial summation across the visual field in strabismic and anisometropic amblyopia ▶     Shindy Je, Fergal A. Ennis, J. Margaret Woodhouse et al.             Large-scale patterning of single cells and cell clusters in hydrogels ▶     Xiangyu Gong, Kristen L. Mills             Lack of effects of simvastatin on smoking cessation in humans: A double-blind, randomized, placebo-controlled clinical study ▶     Isabelle Ingrand, Marcello Solinas, Pierre Ingrand et al.             Introgression of a functional epigenetic OsSPL14 WFP allele into elite indica rice genomes greatly improved panicle traits and grain yield ▶     Sung-Ryul Kim, Joie M. Ramos, Rona Joy M. Hizon et al.             Large XPF-dependent deletions following misrepair of a DNA double strand break are prevented by the RNA:DNA helicase Senataxin ▶     Julien Brustel, Zuzanna Kozik, Natalia Gromak et al.             Preoperative Heart Rate Variability as Predictors of Vagus Nerve Stimulation Outcome in Patients with Drug-resistant Epilepsy ▶     Hong-Yun Liu, Zhao Yang, Fan-Gang Meng et al.             Frontal cortex function as derived from hierarchical predictive coding ▶     William H. Alexander, Joshua W. Brown             Metabolic characterization of directly reprogrammed renal tubular epithelial cells (iRECs) ▶     Simon Lagies, Roman Pichler, Michael M. Kaminski et al.             A preliminary study on efficacy of rupatadine for the treatment of acute dengue infection ▶     Gathsaurie Neelika Malavige, Ananda Wijewickrama, Samitha Fernando et al.             Adenovirus-prime and baculovirus-boost heterologous immunization achieves sterile protection against malaria sporozoite challenge in a murine model ▶     Kunitaka Yoshida, Mitsuhiro Iyori, Andrew M. Blagborough et al.             Fatty Acid Supplementation Reverses the Small Colony Variant Phenotype in Triclosan-Adapted Staphylococcus aureus: Genetic, Proteomic and Phenotypic Analyses ▶     Abdulrahman S. Bazaid, Sarah Forbes, Gavin J. Humphreys et al.             Critical role of sigma-1 receptors in central neuropathic pain-related behaviours after mild spinal cord injury in mice ▶     Sílvia Castany, Georgia Gris, José Miguel Vela et al.             Genetic variants in two pathways influence serum urate levels and gout risk: a systematic pathway analysis ▶     Zheng Dong, Jingru Zhou, Xia Xu et al.             Conditional knockout of NaV1.6 in adult mice ameliorates neuropathic pain ▶     Lubin Chen, Jianying Huang, Peng Zhao et al.             Exogenous hydrogen sulfide gas does not induce hypothermia in normoxic mice ▶     Sebastiaan D. Hemelrijk, Marcel C. Dirkes, Marit H. N. van Velzen et al.             Long-term nutrient addition increased CH4 emission from a bog through direct and indirect effects ▶     Sari Juutinen, Tim R. Moore, Jill L. Bubier et al.             The use of SWATH to analyse the dynamic changes of bacterial proteome of carbapanemase-producing Escherichia coli under antibiotic pressure ▶     Hanna E. Sidjabat, Jolene Gien, David Kvaskoff et al.             Lateral attachment of kinetochores to microtubules is enriched in prometaphase rosette and facilitates chromosome alignment and bi-orientation establishment ▶     Go Itoh, Masanori Ikeda, Kenji Iemura et al.             An allosteric link connecting the lipid-protein interface to the gating of the nicotinic acetylcholine receptor ▶     Jaimee A. Domville, John E. Baenziger             Intramembranous ossification and endochondral ossification are impaired differently between glucocorticoid-induced osteoporosis and estrogen deficiency-induced osteoporosis ▶     Hongyang Zhang, Xiaojuan Shi, Long Wang et al.             Fat accretion measurements strengthen the relationship between feed conversion efficiency and Nitrogen isotopic discrimination while rumen microbial genes contribute little ▶     Sarah J. Meale, Marc D. Auffret, Mick Watson et al.             Application of Bld-1-Embedded Elastin-Like Polypeptides in Tumor Targeting ▶     Vijaya Sarangthem, Eun A. Cho, Aena Yi et al.             Recognition motif and mechanism of ripening inhibitory peptides in plant hormone receptor ETR1 ▶     Dalibor Milić, Markus Dick, Daniel Mulnaes et al.             Evaluation of three methods for biomass estimation in small invertebrates, using three large disparate parasite species as model organisms ▶     Cristina Llopis-Belenguer, Isabel Blasco-Costa, Juan Antonio Balbuena             Loss of mRNA surveillance pathways results in widespread protein aggregation ▶     Nur Hidayah Jamar, Paraskevi Kritsiligkou, Chris M. Grant             Solution structure and dynamics of anti-CRISPR AcrIIA4, the Cas9 inhibitor ▶     Iktae Kim, Migyeong Jeong, Donghyun Ka et al.             Landscape of the spliced leader trans-splicing mechanism in Schistosoma mansoni ▶     Mariana Boroni, Michael Sammeth, Sandra Grossi Gava et al.             Functional innate immunity restricts Hepatitis C Virus infection in induced pluripotent stem cell–derived hepatocytes ▶     Anja Schöbel, Kathrin Rösch, Eva Herker             Support for viral persistence in bats from age-specific serology and models of maternal immunity ▶     Alison J. Peel, Kate S. Baker, David T. S. Hayman et al.             Engineering Axl specific CAR and SynNotch receptor for cancer therapy ▶     Jang Hwan Cho, Atsushi Okuma, Dalal Al-Rubaye et al.             PDE4D regulates Spine Plasticity and Memory in the Retrosplenial Cortex ▶     Karsten Baumgärtel, Andrea Green, Diana Hornberger et al.             Boat noise impacts risk assessment in a coral reef fish but effects depend on engine type ▶     Mark I. McCormick, Bridie J. M. Allan, Harry Harding et al.             Multipotent Adult Progenitor Cells Support Lymphatic Regeneration at Multiple Anatomical Levels during Wound Healing and Lymphedema ▶     Manu Beerens, Xabier L. Aranguren, Benoit Hendrickx et al.             Pathways of cellular internalisation of liposomes delivered siRNA and effects on siRNA engagement with target mRNA and silencing in cancer cells ▶     Abdullah Alshehri, Anna Grabowska, Snow Stolnik             Chimeric peptide EP45 as a dual agonist at GLP-1 and NPY2R receptors ▶     Oleg G. Chepurny, Ron L. Bonaccorso, Colin A. Leech et al.                 • Careers & Jobs           naturejobs.com Science jobs of the week       Postdoc Position (100%)     Universitätsklinikum Erlangen, Department of Transfusion Medicine and Haemostaseology            International Fellows Programme     Wellcome Sanger Institute            International PhD program of the Fribourg Graduate School of Life Sciences (FGLS)     University of Fribourg            Postdoctoral Research Fellow - BME     University of South Dakota            Postdoctoral Research Fellow - BME     University of South Dakota            The FEBS Journal – Editorial Manager     FEBS (Federation of European Biochemical Societies)            Senior Lecturer     Monash University            Postdoctoral Research Assistant     The Earlham Institute            RF Engineer / Staff Scientist     National Institute of Neurological Disorders and Stroke National Institutes of Health (NIH)            Postdoctoral position     New York Medical College          No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. 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