Thursday, April 5, 2018

Nature contents: 05 April 2018

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  journal cover  
Nature Volume 556 Issue 7699
 
This Week  
 
 
Editorials  
 
 
 
Nature: the truth
Myths always circulate about Nature’s editorial processes and policies. Here is an attempt to dispel them.
Time to talk about why so many postgrads have poor mental health
An outpouring on Twitter highlights the acute pressures on young scientists.
 
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World View  
 
 
 
Use our personal data for the common good
Technology giants should take lessons from the Human Genome Project and be data stewards, not data owners, says Hetan Shah.
 
Seven Days  
 
 
 
Rogue space station, CRISPR crops and French AI pledge
The week in science: 30 March–5 April 2018.
Research Highlights  
 
 
 
This issue's Research Highlights
Selections from the scientific literature.
 
 
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News in Focus
 
NASA reveals major delay for $8-billion Hubble successor
Setback for James Webb Space Telescope could have broader effects on agency’s astrophysics programme.
Alexandra Witze
  Cancer researchers push to relax rules for clinical trials
US government examines whether criteria for participating in drug studies unnecessarily exclude some people.
Heidi Ledford
Beguiling dark-matter signal persists 20 years on
Physicists at experiment in Italy continue to see a data fluctuation that they say represents dark matter — but the mystery deepens.
Davide Castelvecchi
  EU copyright reforms draw fire from scientists
Planned changes threaten open science, research advocates warn.
Quirin Schiermeier
Features  
 
 
 
Squeaky clean mice could be ruining research
Most lab mice are kept in pristine conditions, but a few immunologists think a dose of dirt could make them a better model of human disease.
Cassandra Willyard
Multimedia  
 
 
Nature Podcast 5 April 2018
This week, dissecting human influence on the Mississippi's floods, and getting 'dirty' mice into the lab.
 
 
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Comment
 
Reward food companies for improving nutrition
Governments must provide incentives for businesses to fix the global food system, not just punish them for acting irresponsibly, argues Lawrence Haddad.
Lawrence Haddad
Developing countries must lead on solar geoengineering research
The nations that are most vulnerable to climate change must drive discussions of modelling, ethics and governance, argue A. Atiq Rahman, Paulo Artaxo, Asfawossen Asrat, Andy Parker and 8 co-signatories.
A. Atiq Rahman, Paulo Artaxo, Asfawossen Asrat et al.
Books and Arts  
 
 
 
Swansong of Hans Rosling, data visionary
Jim O’Neill hails the last book by a statistician who recast progress in health and development.
Jim O’Neill
From meat to mind: the root of consciousness
Douwe Draaisma enjoys Michael Gazzaniga’s exploration of the biological basis of consciousness.
Douwe Draaisma
Tom Lehrer at 90: a life of scientific satire
Andrew Robinson celebrates the high notes in the mathematician’s inimitable musical oeuvre.
Andrew Robinson
Correspondence  
 
 
 
Uptick in US female members of International Astronomical Union
David Soderblom
  How philosophy was squeezed out of the PhD
Michael Stocker
Uphold Hawking’s and Sulston’s support for European science
Rolf Heuer, Paul Nurse
  Sciences unite in Spain to promote research for advancing society
Fernando Baquero, Jose A. Gutiérrez-Fuentes
Alfred Nobel’s 1895 will is strictly upheld to this day
Göran K. Hansson
   
Obituary  
 
 
 
Günter Blobel (1936–2018)
Biologist who decoded how proteins are sorted in cells.
Sanford Simon
 
 
Specials
 
TOOLBOX  
 
 
 
Ecology’s remote-sensing revolution
Satellite data, and the tools that ecologists use to analyse them, are more accessible and plentiful than ever.
Roberta Kwok
 
 
Research
 
NEW ONLINE  
 
 
 
Metabolic enzyme PFKFB4 activates transcriptional coactivator SRC-3 to drive breast cancer
The glycolytic enzyme PFKFB4 directly phosphorylates and regulates binding of the coactivator SRC-3 to ATF4 and thereby increases the transcriptional activity of this complex, leading to increased expression of metabolic genes, and enhancing tumour growth and metastasis.
Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin
Analysis of viral samples from deceased piglets shows that a bat coronavirus was responsible for an outbreak of fatal disease in China and highlights the importance of the identification of coronavirus diversity and distribution in bats in order to mitigate future outbreaks of disease.
Crystal structures of the gastric proton pump
Crystal structures of the gastric proton pump in complex with two inhibitory drugs reveal the mechanism that generates the steep acidic gradient across the membranes of parietal cells.
The evolutionary history of vertebrate RNA viruses
Around 200 new vertebrate-specific viruses are discovered, and every vertebrate-specific viral family known to infect mammals and birds is also present in amphibians, reptiles or fish, suggesting that evolution of vertebrate viruses mirrors that of vertebrate hosts.
Accelerated increase in plant species richness on mountain summits is linked to warming
Analysis of changes in plant species richness on mountain summits over the past 145 years suggests that increased climatic warming has led to an acceleration in species richness increase.
Characterization of the 1S–2S transition in antihydrogen
The shape of the spectral line and the resonance frequency of the 1S–2S transition in antihydrogen agree very well with those of hydrogen.
Structure of photosynthetic LH1–RC supercomplex at 1.9 Å resolution
The structure of the Thermochromatium tepidum calcium-ion-bound light-harvesting–reaction centre (LH1–RC) supercomplex, which performs the primary reactions of photosynthesis in purple photosynthetic bacteria, is resolved to the atomic level.
Cryo-EM structure of the Blastochloris viridis LH1–RC complex at 2.9 Å
A cryo-electron microscopy structure of the light-harvesting–reaction centre (LH1–RC) complex of the photosynthetic bacterium Blastochloris viridis suggests factors that underlie the large redshift in the absorption spectrum of bacteriochlorophyll in the complex and that promote quinone–quinol translocation across the LH1 ring.
Distributed hepatocytes expressing telomerase repopulate the liver in homeostasis and injury
A population of hepatocytes expressing high levels of telomerase are distributed throughout the liver and regenerate the liver during homeostasis and after injury.
Advanced maturation of human cardiac tissue grown from pluripotent stem cells
A tissue culture system that provides an increasing intensity of electromechanical stimulation over time enables an in vitro model of cardiac tissue derived from human induced pluripotent stem cells to develop many of the characteristics of adult cardiac tissue.
A small peptide modulates stomatal control via abscisic acid in long-distance signalling
In an Arabidopsis model, the CLE25 peptide acts as a root-to-shoot signalling molecule that modulates abscisic acid expression to close stomata and enhance resistance to dehydration.
Brief Communications Arising  
 
 
 
Improving outcomes in congenital cataract
Ameenat Lola Solebo, Christopher J. Hammond, Jugnoo S. Rahi
Lens regeneration in children
Demetrios G. Vavvas, Thaddeus P. Dryja, M. Edward Wilson et al.
Liu et al. reply
Yizhi Liu, David Granet, Haotian Lin et al.
Investigating non-Joulian magnetostriction
Yangkun He, Yongjun Han, P. Stamenov et al.
Articles  
 
 
 
Unconventional superconductivity in magic-angle graphene superlattices
A superlattice consisting of two graphene sheets twisted relative to each other by a specific amount exhibits superconductivity when doped electrostatically, with a relatively high critical temperature.
Yuan Cao, Valla Fatemi, Shiang Fang et al.
The logic of single-cell projections from visual cortex
Tracing of projection neuron axons from the primary visual cortex to their targets shows that these neurons often project to multiple cortical areas of the mouse brain.
Yunyun Han, Justus M. Kebschull, Robert A. A. Campbell et al.
Evolved Cas9 variants with broad PAM compatibility and high DNA specificity
Phage-assisted continuous evolution of Cas9 variants with broad PAM compatibility and high DNA specificity that can be used for transcriptional activation, gene disruption and base editing.
Johnny H. Hu, Shannon M. Miller, Maarten H. Geurts et al.
Architecture of the human GATOR1 and GATOR1–Rag GTPases complexes
Cryo-electron microscopy and biochemical analyses of the GATOR1 protein complex reveal that two binding modes underpin its ability to regulate Rag GTPases as a GTPase-activating protein for RAGA.
Kuang Shen, Rick K. Huang, Edward J. Brignole et al.
Letters  
 
 
 
A density cusp of quiescent X-ray binaries in the central parsec of the Galaxy
Observations of 12 X-ray binaries that contain black holes within the central parsec of the Galaxy suggest the existence of hundreds more, and even more isolated black holes.
Charles J. Hailey, Kaya Mori, Franz E. Bauer et al.
Quantized Majorana conductance
In a step towards topological quantum computation, a quantized Majorana conductance has been demonstrated for a semiconducting nanowire coupled to a superconductor.
Hao Zhang, Chun-Xiao Liu, Sasa Gazibegovic et al.
Correlated insulator behaviour at half-filling in magic-angle graphene superlattices
When the two graphene sheets in a van der Waals heterostructure are twisted relative to each other by a specific amount, Mott-like insulating phases are observed at half-filling.
Yuan Cao, Valla Fatemi, Ahmet Demir et al.
Room-temperature nine-µm-wavelength photodetectors and GHz-frequency heterodyne receivers
Quantum-well photodetectors fabricated from photonic metamaterials show enhanced room-temperature sensitivity to long-wavelength infrared radiation and produce gigahertz-frequency heterodyne signals when pumped with quantum cascade lasers.
Daniele Palaferri, Yanko Todorov, Azzurra Bigioli et al.
Molecular nucleation mechanisms and control strategies for crystal polymorph selection
Cryo-transmission electron microscopy reveals the initiation of glucose isomerase crystals and their growth into different crystalline or gel polymorphs, and shows that mutating specific amino acids controls which polymorph grows.
Alexander E. S. Van Driessche, Nani Van Gerven, Paul H. H. Bomans et al.
Climatic control of Mississippi River flood hazard amplified by river engineering
A suite of river discharge, tree-ring, sedimentary and climate data shows that the Mississippi’s flood magnitude has risen by about twenty per cent over the past half-century, largely owing to engineering works.
Samuel E. Munoz, Liviu Giosan, Matthew D. Therrell et al.
Shifts in tree functional composition amplify the response of forest biomass to climate
Forest inventory data from the 1980s and 2000s show the response of eastern USA forests to climate variability; direct effects of climate on forest biomass are amplified by changes in tree species composition.
Tao Zhang, Ülo Niinemets, Justin Sheffield et al.
A new class of synthetic retinoid antibiotics effective against bacterial persisters
Synthetic retinoid compounds can kill both growing and persister MRSA cells by disrupting the membrane lipid bilayer, and are effective in a mouse model of chronic MRSA infection.
Wooseong Kim, Wenpeng Zhu, Gabriel Lambert Hendricks et al.
Whole-organism clone tracing using single-cell sequencing
A single-cell sequencing method is developed that uses transcriptomics and CRISPR–Cas9 technology to investigate clonal relationships in cells present in different zebrafish tissues.
Anna Alemany, Maria Florescu, Chloé S. Baron et al.
Itaconate is an anti-inflammatory metabolite that activates Nrf2 via alkylation of KEAP1
Treatment of lipopolysaccharide-activated macrophages with the cell-permeable itaconate derivative 4-octyl itaconate activates the anti-inflammatory transcription factor Nrf2 by alkylating key cysteine residues on the KEAP1 protein.
Evanna L. Mills, Dylan G. Ryan, Hiran A. Prag et al.
Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis
Evolutionary coupling-enabled molecular replacement determination of the structure of Thermus thermophilus RodA reveals a highly conserved cavity in its transmembrane domain, and mutagenesis experiments in Bacillus subtilis and Escherichia coli show that perturbation of this cavity abolishes RodA function.
Megan Sjodt, Kelly Brock, Genevieve Dobihal et al.
Structure of the insulin receptor–insulin complex by single-particle cryo-EM analysis
Cryo-electron microscopy structures of insulin in a complex with the insulin receptor define the S2 binding site on the receptor and suggest a mechanism for downstream propagation of insulin signalling.
Giovanna Scapin, Venkata P. Dandey, Zhening Zhang et al.
Modular assembly of the nucleolar pre-60S ribosomal subunit
Cryo-electron microscopy structures of multiple states along the assembly pathway of the nucleolar pre-60S ribosomal subunit suggest that folding of the pre-ribosomal RNA and sequential binding of transient assembly factors are regulated by steric hindrance among these factors.
Zahra Assur Sanghai, Linamarie Miller, Kelly R. Molloy et al.
Structural insights into the voltage and phospholipid activation of the mammalian TPC1 channel
Structures of the voltage-gated and phosphatidylinositol 3,5-bisphosphate-activated mouse two-pore channel TPC1 in apo and ligand-bound states provide insights into the selectivity and gating mechanisms of mammalian two-pore channels.
Ji She, Jiangtao Guo, Qingfeng Chen et al.
CORRIGENDUM  
 
 
 
Corrigendum: Commensal bacteria make GPCR ligands that mimic human signalling molecules
Louis J. Cohen, Daria Esterhazy, Seong-Hwan Kim et al.
Errata  
 
 
 
Erratum: Asparagine bioavailability governs metastasis in a model of breast cancer
Simon R. V. Knott, Elvin Wagenblast, Showkhin Khan et al.
Erratum: Evolutionary history resolves global organization of root functional traits
Zeqing Ma, Dali Guo, Xingliang Xu et al.
News and Views  
 
 
 
Mississippi rising
Scott St. George
Forests in flux as climate varies
Sebastiaan Luyssaert, J. Hans C. Cornelissen
Novel electronic states seen in graphene
Eugene J. Mele
 
 
 
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50 & 100 years ago
 
Two-pore channels open up
Sandip Patel
Bacterial persister cells tackled
Julian G. Hurdle, Aditi Deshpande
 
Observations of the birth of crystals
Robert G. Alberstein, F. Akif Tezcan
 
 
Careers & Jobs
 
Feature  
 
 
 
How researchers are ensuring that their work has an impact
Jack Leeming
Career Briefs  
 
 
 
Canada gains popularity with prospective students
Female leadership falls at top universities
Futures  
 
 
Requiem
Return journey.
Christine Lucas
 
 
 
 
 

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