| |  | Advertisement |  | | |  | | | | | | |  | Advertisement |  | Nature Collection: Gut-brain axis This Nature Collection brings together Research, Reviews and News from across the Nature Research journals and presents a selection of articles covering key aspects of the gut-brain axis including the gut microbiota and immune, neuroendocrine and neural factors. Access this collection >> Produced with support from: Abbott | | |  | | | Advertisement |  | Nature Catalysis is an online-only journal that publishes research, review and comment across all areas of catalysis. EXPLORE THE LATEST ISSUE >> |  | | |  | | |  | | | Latest Articles | View all Articles | | | | | Two-electron spin correlations in precision placed donors in silicon OPEN |  | | M. A. Broome, S. K. Gorman, M. G. House, S. J. Hile, J. G. Keizer, D. Keith, C. D. Hill, T. F. Watson, W. J. Baker, L. C. L. Hollenberg & M. Y. Simmons |  | | Donor impurities in silicon are promising candidates as qubits but in order to create a large-scale quantum computer inter-qubit coupling must be introduced by precise positioning of the donors. Here the authors demonstrate the fabrication, manipulation and readout of a two qubit phosphorous donor device. |  | | 07 March 2018 | doi: 10.1038/s41467-018-02982-x |  | | Physics Qubits | | Ultra-thin enzymatic liquid membrane for CO2 separation and capture OPEN |  | | Yaqin Fu, Ying-Bing Jiang, Darren Dunphy, Haifeng Xiong, Eric Coker, Stan Chou, Hongxia Zhang, Juan M. Vanegas, Jonas G. Croissant, Joseph L. Cecchi, Susan B. Rempe & C. Jeffrey Brinker |  | | Porous membranes show great promise for CO2 separation and capture, but are currently limited by a trade-off between permeance and selectivity. Here, the authors fabricate a bio-inspired, ultra-thin enzymatic liquid membrane that displays exceptional CO2 permeability and selectivity under ambient conditions. |  | | 07 March 2018 | doi: 10.1038/s41467-018-03285-x |  | | Bioinspired materials Carbon capture and storage Chemical engineering Materials chemistry | | Genome-wide analysis yields new loci associating with aortic valve stenosis OPEN |  | | Anna Helgadottir , Gudmar Thorleifsson, Solveig Gretarsdottir, Olafur A. Stefansson, Vinicius Tragante, Rosa B. Thorolfsdottir, Ingileif Jonsdottir, Thorsteinn Bjornsson, Valgerdur Steinthorsdottir, Niek Verweij, Jonas B. Nielsen, Wei Zhou, Lasse Folkersen, Andreas Martinsson, Mahyar Heydarpour, Siddharth Prakash, Gylfi Oskarsson, Tomas Gudbjartsson, Arnar Geirsson, Isleifur Olafsson et al. |  | | Aortic valve stenosis (AS) is the most common valvular heart disease. Here the authors identify two new AS loci that also associate with bicuspid aortic valve, aortic root diameter and/or coronary artery disease implicating both developmental abnormalities and atherosclerosis-like processes in AS. |  | | 07 March 2018 | doi: 10.1038/s41467-018-03252-6 |  | | Congenital heart defects Genome-wide association studies Heart development Valvular disease | | Ionic liquid gating control of RKKY interaction in FeCoB/Ru/FeCoB and (Pt/Co)2/Ru/(Co/Pt)2 multilayers OPEN |  | | Qu Yang, Lei Wang, Ziyao Zhou, Liqian Wang, Yijun Zhang, Shishun Zhao, Guohua Dong, Yuxin Cheng, Tai Min, Zhongqiang Hu, Wei Chen, Ke Xia & Ming Liu |  | | Energy efficient control of magnetization in antiferromagnetic materials is one of the key ingredients for antiferromagnetic spintronics. Here the authors demonstrate voltage control of RKKY interaction and magnetization switching in synthetic antiferromagnetic multilayers by ionic liquid gating. |  | | 07 March 2018 | doi: 10.1038/s41467-018-03356-z |  | | Ferroelectrics and multiferroics Magnetic properties and materials | | Topological hybrid silicon microlasers OPEN |  | | Han Zhao, Pei Miao, Mohammad H. Teimourpour, Simon Malzard, Ramy El-Ganainy, Henning Schomerus & Liang Feng |  | | Topological effects, first observed in condensed matter physics, are now also studied in optical systems, extending the scope to active topological devices. Here, Zhao et al. combine topological physics with non-Hermitian photonics, demonstrating a topological microlaser on a silicon platform. |  | | 07 March 2018 | doi: 10.1038/s41467-018-03434-2 |  | | Semiconductor lasers Silicon photonics | | Nitrogen fixation sustained productivity in the wake of the Palaeoproterozoic Great Oxygenation Event OPEN |  | | Genming Luo, Christopher K. Junium, Gareth Izon, Shuhei Ono, Nicolas J. Beukes, Thomas J. Algeo, Ying Cui, Shucheng Xie & Roger E. Summons |  | | The response of biogeochemical nitrogen cycle to Earth-surface oxygenation remains poorly known. Here, the authors show that aerobic nitrogen cycling was pervasive prior to the Great Oxygenation Event (GOE), but its evolution was complex, with diazotrophy prevailing and sustaining productivity after the GOE. |  | | 07 March 2018 | doi: 10.1038/s41467-018-03361-2 |  | | Element cycles Marine chemistry | | Improving genetic prediction by leveraging genetic correlations among human diseases and traits OPEN |  | | Robert M. Maier, Zhihong Zhu, Sang Hong Lee, Maciej Trzaskowski, Douglas M. Ruderfer, Eli A. Stahl, Stephan Ripke, Naomi R. Wray, Jian Yang, Peter M. Visscher & Matthew R. Robinson |  | | Genetic prediction of complex traits so far has limited accuracy because of insufficient understanding of the genetic risk. Here, Maier et al. develop an improved method for trait prediction that makes use of genetic correlations between traits and apply it to summary statistics of psychiatric diseases. |  | | 07 March 2018 | doi: 10.1038/s41467-017-02769-6 |  | | Genome-wide association studies Predictive medicine Quantitative trait Statistical methods | | Ice-volume-forced erosion of the Chinese Loess Plateau global Quaternary stratotype site OPEN |  | | T. Stevens, J.-P. Buylaert, C. Thiel, G. Újvári, S. Yi, A. S. Murray, M. Frechen & H. Lu |  | | A basic requirement for reconstructing past environmental change is accurate understanding of sediment age. Here, the authors show that the interpretation of a benchmark archive in China has been inaccurate, and that ice volume primarily controls desert dynamics, sediment preservation, and precipitation at the site. |  | | 07 March 2018 | doi: 10.1038/s41467-018-03329-2 |  | | Environmental impact Palaeoclimate | | A transcriptome-wide association study identifies PALMD as a susceptibility gene for calcific aortic valve stenosis OPEN |  | | Sébastien Thériault, Nathalie Gaudreault, Maxime Lamontagne, Mickael Rosa, Marie-Chloé Boulanger, David Messika-Zeitoun, Marie-Annick Clavel, Romain Capoulade, François Dagenais, Philippe Pibarot, Patrick Mathieu & Yohan Bossé |  | | Progressive remodeling and calcification of the aortic valve leads to calcific aortic valve stenosis (CAVS) and, ultimately, heart failure. In a combined GWAS and TWAS approach, Thériault et al. identify PALMD as a candidate causal gene for CAVS, which is further supported by Mendelian randomization. |  | | 07 March 2018 | doi: 10.1038/s41467-018-03260-6 |  | | Gene expression profiling Genome-wide association studies Valvular disease | | Batch production of 6-inch uniform monolayer molybdenum disulfide catalyzed by sodium in glass OPEN |  | | Pengfei Yang, Xiaolong Zou, Zhepeng Zhang, Min Hong, Jianping Shi, Shulin Chen, Jiapei Shu, Liyun Zhao, Shaolong Jiang, Xiebo Zhou, Yahuan Huan, Chunyu Xie, Peng Gao, Qing Chen, Qing Zhang, Zhongfan Liu & Yanfeng Zhang |  | | Growth of large-area monolayer transition metal dichalcogenides is critical for their application but remains challenging. Here Yang et al. report rapid chemical vapor deposition of 6-inch monolayer molybdenum disulfide by sufficiently uniformly supplying the precursors and catalysts. |  | | 07 March 2018 | doi: 10.1038/s41467-018-03388-5 |  | | Synthesis and processing Two-dimensional materials | | Itch/β-arrestin2-dependent non-proteolytic ubiquitylation of SuFu controls Hedgehog signalling and medulloblastoma tumorigenesis OPEN |  | | Paola Infante , Roberta Faedda, Flavia Bernardi, Francesca Bufalieri, Ludovica Lospinoso Severini, Romina Alfonsi, Daniela Mazzà, Mariangela Siler, Sonia Coni, Agnese Po, Marialaura Petroni, Elisabetta Ferretti, Mattia Mori, Enrico De Smaele, Gianluca Canettieri, Carlo Capalbo, Marella Maroder, Isabella Screpanti, Marcel Kool, Stefan M. Pfister et al. |  | | SuFu is a tumour suppressor in medulloblastoma and regulates Gli proteins in the Sonic Hedgehog pathway; however, the molecular mechanisms behind this regulation are unclear. Here, the authors show that the Itch/β-arrestin2 complex binds and ubiquitylates SuFu, facilitating the interaction with Gli3 and its conversion into the repressive form, thus counteracting medulloblastoma formation. |  | | 07 March 2018 | doi: 10.1038/s41467-018-03339-0 |  | | Cancer Ubiquitylation | | Direct observation of orbital hybridisation in a cuprate superconductor OPEN |  | | C. E. Matt , D. Sutter, A. M. Cook, Y. Sassa, M. Månsson, O. Tjernberg, L. Das, M. Horio, D. Destraz, C. G. Fatuzzo, K. Hauser, M. Shi, M. Kobayashi, V. N. Strocov, T. Schmitt, P. Dudin, M. Hoesch, S. Pyon, T. Takayama, H. Takagi et al. |  | | The essential physics of cuprate superconductors is often described by single-band models. Here, Matt et al. report direct observation of a two-band electronic structure in La-based cuprates. |  | | 06 March 2018 | doi: 10.1038/s41467-018-03266-0 |  | | Condensed-matter physics Electronic properties and materials Superconducting properties and materials | | Gene-by-environment interactions in urban populations modulate risk phenotypes OPEN |  | | Marie-Julie Favé, Fabien C. Lamaze, David Soave, Alan Hodgkinson, Héloïse Gauvin, Vanessa Bruat, Jean-Christophe Grenier, Elias Gbeha, Kimberly Skead, Audrey Smargiassi, Markey Johnson, Youssef Idaghdour & Philip Awadalla |  | | Individuals with different genotypes may respond differently to environmental variation. Here, Favé et al. find substantial impacts of different environment exposures on the transcriptome and clinical endophenotypes when controlling for genetic ancestry by analyzing data from ∼1000 individuals from a founder population in Quebec. |  | | 06 March 2018 | doi: 10.1038/s41467-018-03202-2 |  | | Epidemiology Gene regulation Population genetics Quantitative trait | | Decapping protein EDC4 regulates DNA repair and phenocopies BRCA1 OPEN |  | | Gonzalo Hernández , María José Ramírez, Jordi Minguillón, Paco Quiles, Gorka Ruiz de Garibay, Miriam Aza-Carmona, Massimo Bogliolo, Roser Pujol, Rosario Prados-Carvajal, Juana Fernández, Nadia García, Adrià López, Sara Gutiérrez-Enríquez, Orland Diez, Javier Benítez, Mónica Salinas, Alex Teulé, Joan Brunet, Paolo Radice, Paolo Peterlongo et al. |  | | Mutations in BRCA1 are associated with an increased risk of breast and ovarian cancer. Here the authors show that EDC4, a component of P-bodies, is a member of the BRCA1 complex with roles in stimulating end resection at breaks. |  | | 06 March 2018 | doi: 10.1038/s41467-018-03433-3 |  | | Cancer Double-strand DNA breaks Genomic instability RNA metabolism | | Asynchrony between Antarctic temperature and CO2 associated with obliquity over the past 720,000 years OPEN |  | | Ryu Uemura, Hideaki Motoyama, Valérie Masson-Delmotte, Jean Jouzel, Kenji Kawamura, Kumiko Goto-Azuma, Shuji Fujita, Takayuki Kuramoto, Motohiro Hirabayashi, Takayuki Miyake, Hiroshi Ohno, Koji Fujita, Ayako Abe-Ouchi, Yoshinori Iizuka, Shinichiro Horikawa, Makoto Igarashi, Keisuke Suzuki, Toshitaka Suzuki & Yoshiyuki Fujii |  | | The Antarctic temperature record displays a puzzling asynchrony with changes in CO2 through glacial cycles. Here, the authors show that a 720,000-year Antarctic temperature record is affected by variations in obliquity-induced local insolation that are associated with phase modulation of eccentricity cycle. |  | | 06 March 2018 | doi: 10.1038/s41467-018-03328-3 |  | | Cryospheric science Palaeoceanography Palaeoclimate | | Adoptive cancer immunotherapy using DNA-demethylated T helper cells as antigen-presenting cells OPEN |  | | Alexei F. Kirkin, Karine N. Dzhandzhugazyan, Per Guldberg, Johnny Jon Fang, Rikke S. Andersen, Christina Dahl, Jann Mortensen, Tim Lundby, Aase Wagner, Ian Law, Helle Broholm, Line Madsen, Christer Lundell-Ek, Morten F. Gjerstorff, Henrik J. Ditzel, Martin R. Jensen & Walter Fischer |  | | A critical determinant of tumor eradication by adoptive immunotherapy is the tumor associated antigen recognized by cytotoxic T lymphocytes. Here the authors generate ex vivo autologous cytotoxic T lymphocytes by exposure to antigens induced by DNA demethylation and report the results of a phase 1 trial of 25 patients with recurrent glioblastoma multiforme with tumor regression in three patients. |  | | 06 March 2018 | doi: 10.1038/s41467-018-03217-9 |  | | Cancer Translational research | | Inverted valley polarization in optically excited transition metal dichalcogenides OPEN |  | | Gunnar Berghäuser, Ivan Bernal-Villamil, Robert Schmidt, Robert Schneider, Iris Niehues, Paul Erhart, Steffen Michaelis de Vasconcellos, Rudolf Bratschitsch, Andreas Knorr & Ermin Malic |  | | In atomically thin transition metal dichalcogenides, spin- and valley-polarised states can be addressed thanks to large spin–orbit coupling and circular dichroism. Here, the authors investigate theoretically and experimentally the decay dynamics of spin and valley polarisation in transition metal dichalcogenide monolayers. |  | | 06 March 2018 | doi: 10.1038/s41467-018-03354-1 |  | | Electronic devices Nonlinear optics Two-dimensional materials | | Current-driven dynamics and inhibition of the skyrmion Hall effect of ferrimagnetic skyrmions in GdFeCo films OPEN |  | | Seonghoon Woo, Kyung Mee Song, Xichao Zhang, Yan Zhou, Motohiko Ezawa, Xiaoxi Liu, S. Finizio, J. Raabe, Nyun Jong Lee, Sang-Il Kim, Seung-Young Park, Younghak Kim, Jae-Young Kim, Dongjoon Lee, OukJae Lee, Jun Woo Choi, Byoung-Chul Min, Hyun Cheol Koo & Joonyeon Chang |  | | Non-zero topological charge prevents the straight motion of ferromagnetic skyrmions and hinders their applications. Here, the authors report the stabilization and current-driven dynamics of skyrmions in GdFeCo films in which the ferrimagnetic skyrmions can move with high velocity and reduced skyrmion Hall angle. |  | | 06 March 2018 | doi: 10.1038/s41467-018-03378-7 |  | | Magnetic properties and materials Spintronics | | Convergent genomic signatures of domestication in sheep and goats OPEN |  | | Florian J. Alberto , Frédéric Boyer, Pablo Orozco-terWengel, Ian Streeter, Bertrand Servin, Pierre de Villemereuil, Badr Benjelloun, Pablo Librado, Filippo Biscarini, Licia Colli, Mario Barbato, Wahid Zamani, Adriana Alberti, Stefan Engelen, Alessandra Stella, Stéphane Joost, Paolo Ajmone-Marsan, Riccardo Negrini, Ludovic Orlando, Hamid Reza Rezaei et al. |  | | The sheep and goat were domesticated ~10,500 years ago in the same region of the Middle-East. Here, Alberto et al compare the genomes of wild Asiatic mouflon and Bezoar ibex with that of domestics from local, traditional and improved breeds and find common targets of selection related to domestication and improvement in sheep and goats. |  | | 06 March 2018 | doi: 10.1038/s41467-018-03206-y |  | | Evolutionary genetics Genetic variation | | Herbivorous turtle ants obtain essential nutrients from a conserved nitrogen-recycling gut microbiome OPEN |  | | Yi Hu, Jon G. Sanders, Piotr Łukasik, Catherine L. D’Amelio, John S. Millar, David R. Vann, Yemin Lan, Justin A. Newton, Mark Schotanus, Daniel J. C. Kronauer, Naomi E. Pierce, Corrie S. Moreau, John T. Wertz, Philipp Engel & Jacob A. Russell |  | | Gut bacteria are prevalent across insects including ants, but their precise roles are often unclear. Here, Hu et al. show that microbes aid ants by recycling nitrogen into bio-available amino acids. This function is conserved across the turtle ants, suggesting an ancient nutritional mutualism. |  | | 06 March 2018 | doi: 10.1038/s41467-018-03357-y |  | | Evolutionary ecology Microbial ecology Microbiome Symbiosis | | Context-dependent interactions and the regulation of species richness in freshwater fish OPEN |  | | Andrew S. MacDougall, Eric Harvey, Jenny L. McCune, Karin A. Nilsson, Joseph Bennett, Jennifer Firn, Timothy Bartley, James B. Grace, Jocelyn Kelly, Tyler D. Tunney, Bailey McMeans, Shin-Ichiro S. Matsuzaki, Taku Kadoya, Ellen Esch, Kevin Cazelles, Nigel Lester & Kevin S. McCann |  | | Species richness patterns are driven by biotic and abiotic factors, the relative strengths of which are unclear. Here, the authors test how species interactions or environmental traits influence fish richness across over 700 Canadian lakes, showing a surprisingly small role of negative interactions. |  | | 06 March 2018 | doi: 10.1038/s41467-018-03419-1 |  | | Biogeography Community ecology Freshwater ecology Limnology | | Anisotropic photoemission time delays close to a Fano resonance OPEN |  | | Claudio Cirelli , Carlos Marante, Sebastian Heuser, C. L. M. Petersson, Álvaro Jiménez Galán, Luca Argenti, Shiyang Zhong, David Busto, Marcus Isinger, Saikat Nandi, Sylvain Maclot, Linnea Rading, Per Johnsson, Mathieu Gisselbrecht, Matteo Lucchini, Lukas Gallmann, J. Marcus Dahlström, Eva Lindroth, Anne L’Huillier, Fernando Martín et al. |  | | Ionization time delays are of interest in understanding the photoionization mechanism in atoms and molecules in ultra-short time scales. Here the authors investigate the angular dependence of photoionization time delays in the presence of an autoionizing resonance in argon atom using RABBITT technique. |  | | 06 March 2018 | doi: 10.1038/s41467-018-03009-1 |  | | Atomic and molecular interactions with photons Attosecond science High-harmonic generation | | Microhomology-assisted scarless genome editing in human iPSCs OPEN |  | | Shin-Il Kim, Tomoko Matsumoto, Harunobu Kagawa, Michiko Nakamura, Ryoko Hirohata, Ayano Ueno, Maki Ohishi, Tetsushi Sakuma, Tomoyoshi Soga, Takashi Yamamoto & Knut Woltjen |  | | Positive selection for gene targeting is a common and reliable method to generate isogenic disease models in human pluripotent stem cells. Here, the authors present engineered selection markers which achieve scarless excision by CRISPR-Cas9 and microhomology mediated end-joining. |  | | 05 March 2018 | doi: 10.1038/s41467-018-03044-y |  | | CRISPR-Cas9 genome editing Genetic engineering Stem-cell biotechnology | | Life times of metastable states guide regulatory signaling in transcriptional riboswitches OPEN |  | | Christina Helmling, Dean-Paulos Klötzner, Florian Sochor, Rachel Anne Mooney, Anna Wacker, Robert Landick, Boris Fürtig, Alexander Heckel & Harald Schwalbe |  | | Riboswitches are RNA-based regulatory elements, which regulate downstream gene expression by binding of small molecular weight ligands. Here the authors demonstrate the molecular mechanism of a transcriptional riboswitch that integrates changes in transcription rates, metabolite concentration, and kinetic on- and off-rates of ligand binding. |  | | 05 March 2018 | doi: 10.1038/s41467-018-03375-w |  | | Riboswitches RNA Solution-state NMR | | Direct conversion of injury-site myeloid cells to fibroblast-like cells of granulation tissue OPEN |  | | Mithun Sinha, Chandan K. Sen, Kanhaiya Singh, Amitava Das, Subhadip Ghatak, Brian Rhea, Britani Blackstone, Heather M. Powell, Savita Khanna & Sashwati Roy |  | | At the site of injury, macrophages exit their characteristic phenotype undergoing direct conversion to fibroblasts. Keratinocyte-derived miR-21, packaged in extracellular vesicles, enables such plasticity which accounts for the vast majority of all fibroblasts in the granulation tissue. |  | | 05 March 2018 | doi: 10.1038/s41467-018-03208-w |  | | Inflammation miRNAs Monocytes and macrophages | | Elucidating anionic oxygen activity in lithium-rich layered oxides OPEN |  | | Jing Xu, Meiling Sun, Ruimin Qiao, Sara E. Renfrew, Lu Ma, Tianpin Wu, Sooyeon Hwang, Dennis Nordlund, Dong Su, Khalil Amine, Jun Lu, Bryan D. McCloskey, Wanli Yang & Wei Tong |  | | A reversible oxygen redox process contributes extra capacity and understanding this behavior is of high importance. Here, aided by resonant inelastic X-ray scattering, the authors reveal the distinctive anionic oxygen activity of battery electrodes with different transition metals. |  | | 05 March 2018 | doi: 10.1038/s41467-018-03403-9 |  | | Batteries Electrochemistry | | In situ atomic-scale observation of oxidation and decomposition processes in nanocrystalline alloys OPEN |  | | Jinming Guo, Georg Haberfehlner, Julian Rosalie, Lei Li, María Jazmin Duarte, Gerald Kothleitner, Gerhard Dehm, Yunbin He, Reinhard Pippan & Zaoli Zhang |  | | Oxygen contamination during the mixing of precursor powders for nanocrystalline materials affects alloy microstructure, but exactly how remains unclear. Here, the authors show that stable nano-oxides can form easily inside severely deformed Cu-Fe grains during heating. |  | | 05 March 2018 | doi: 10.1038/s41467-018-03288-8 |  | | Metals and alloys Structural properties | | A diminutive perinate European Enantiornithes reveals an asynchronous ossification pattern in early birds OPEN |  | | Fabien Knoll, Luis M. Chiappe, Sophie Sanchez, Russell J. Garwood, Nicholas P. Edwards, Roy A. Wogelius, William I. Sellers, Phillip L. Manning, Francisco Ortega, Francisco J. Serrano, Jesús Marugán-Lobón, Elena Cuesta, Fernando Escaso & Jose Luis Sanz |  | | Fossil juvenile Mesozoic birds are exceedingly rare and can provide important insight into the early evolution of avian development. Here, Knoll et al. describe one of the smallest known Mesozoic avians, which indicates a clade-wide asynchronous pattern of osteogenesis and great variation in basal bird hatchling size and skeletal maturation tempo. |  | | 05 March 2018 | doi: 10.1038/s41467-018-03295-9 |  | | Evolutionary developmental biology Palaeontology | | Robust singlet fission in pentacene thin films with tuned charge transfer interactions OPEN |  | | K. Broch, J. Dieterle, F. Branchi, N. J. Hestand, Y. Olivier, H. Tamura, C. Cruz, V. M. Nichols, A. Hinderhofer, D. Beljonne, F. C. Spano, G. Cerullo, C. J. Bardeen & F. Schreiber |  | | Singlet fission is desirable for highly efficient solar cells, yet the details of the process remain elusive. Here, Broch et al. show that the changes in bulk intermolecular interactions can have little effect on the singlet fission rate in a mixture of pentacene and weakly interacting spacer molecules. |  | | 05 March 2018 | doi: 10.1038/s41467-018-03300-1 |  | | Excited states Organic molecules in materials science | | MAP4K3 mediates amino acid-dependent regulation of autophagy via phosphorylation of TFEB OPEN |  | | Cynthia L. Hsu, Elian X. Lee, Kara L. Gordon, Edwin A. Paz, Wen-Chuan Shen, Kohta Ohnishi, Jill Meisenhelder, Tony Hunter & Albert R. La Spada |  | | Amino acids stimulate cell growth and depletion in a cell activates autophagy, yet how this is regulated is unclear. Here, the authors show that MAP4K3 (also known as germinal-center kinase-like kinase) acts as an amino acid-dependent regulator of autophagy, via phosphorylation of the transcription factor EB. |  | | 05 March 2018 | doi: 10.1038/s41467-018-03340-7 |  | | Macroautophagy Nutrient signalling | | Marine spatial planning makes room for offshore aquaculture in crowded coastal waters OPEN |  | | S. E. Lester, J. M. Stevens, R. R. Gentry, C. V. Kappel, T. W. Bell, C. J. Costello, S. D. Gaines, D. A. Kiefer, C. C. Maue, J. E. Rensel, R. D. Simons, L. Washburn & C. White |  | | Marine spatial planning is used to co-ordinate multiple ocean uses, and is frequently informed by tradeoffs and composite metrics. Here, Lester et al. introduce an approach that plans for multiple uses simultaneously whilst balancing individual objectives, using a case study of aquaculture development in California. |  | | 05 March 2018 | doi: 10.1038/s41467-018-03249-1 |  | | Ecosystem services Environmental impact Ocean sciences Socioeconomic scenarios | | Operando spectroscopy study of the carbon dioxide electro-reduction by iron species on nitrogen-doped carbon OPEN |  | | Chiara Genovese, Manfred E. Schuster, Emma K. Gibson, Diego Gianolio, Victor Posligua, Ricardo Grau-Crespo, Giannantonio Cibin, Peter P. Wells, Debi Garai, Vladyslav Solokha, Sandra Krick Calderon, Juan J. Velasco-Velez, Claudio Ampelli, Siglinda Perathoner, Georg Held, Gabriele Centi & Rosa Arrigo |  | | Trapping carbon dioxide within usable chemicals is a promising means to mitigate climate change, yet electrochemical C–C couplings are challenging to perform. Here, the authors prepared iron oxyhydroxides on nitrogen-doped carbon that efficiently convert carbon dioxide to acetic acid. |  | | 05 March 2018 | doi: 10.1038/s41467-018-03138-7 |  | | Catalytic mechanisms Electrocatalysis | | Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export OPEN |  | | Karine Leblanc, Bernard Quéguiner, Frédéric Diaz, Véronique Cornet, Mónica Michel-Rodriguez, Xavier Durrieu de Madron, Chris Bowler, Shruti Malviya, Melilotus Thyssen, Gérald Grégori, Mathieu Rembauville, Olivier Grosso, Julie Poulain, Colomban de Vargas, Mireille Pujo-Pay & Pascal Conan |  | | Diatoms are major oceanic primary producers, but some species belonging to the nano- and even picoplankton size are poorly characterized. Here the authors describe a massive spring bloom of the smallest known diatom in the Mediterranean Sea and reveal their general oversight at the global scale. |  | | 05 March 2018 | doi: 10.1038/s41467-018-03376-9 |  | | Carbon cycle DNA sequencing Marine biology | | Protecting tropical forests from the rapid expansion of rubber using carbon payments OPEN |  | | Eleanor M. Warren-Thomas, David P. Edwards, Daniel P. Bebber, Phourin Chhang, Alex N. Diment, Tom D. Evans, Frances H. Lambrick, James F. Maxwell, Menghor Nut, Hannah J. O’Kelly, Ida Theilade & Paul M. Dolman |  | | Expansion of rubber plantations threatens tropical forest carbon stocks and biodiversity, but may be dis-incentivised using carbon finance. Here, Warren-Thomas et al. use forest and agricultural data for Cambodia to show that carbon prices of $30–$51 per tCO2 are needed to match forest protection costs. |  | | 02 March 2018 | doi: 10.1038/s41467-018-03287-9 |  | | Climate-change mitigation Environmental social sciences Forestry | | A macromolecular approach to eradicate multidrug resistant bacterial infections while mitigating drug resistance onset OPEN |  | | Willy Chin, Guansheng Zhong, Qinqin Pu, Chuan Yang, Weiyang Lou, Paola Florez De Sessions, Balamurugan Periaswamy, Ashlynn Lee, Zhen Chang Liang, Xin Ding, Shujun Gao, Collins Wenhan Chu, Simone Bianco, Chang Bao, Yen Wah Tong, Weimin Fan, Min Wu, James L. Hedrick & Yi Yan Yang |  | | Antibiotic resistance is a major threat across the whole healthcare spectrum. Here, the authors report on the development of biodegradable guanidinium functionalized polycarbonates and demonstrate antimicrobial activity against drug resistant infections. |  | | 02 March 2018 | doi: 10.1038/s41467-018-03325-6 |  | | Antimicrobial resistance Biomedical materials Biopolymers | | Nitrogen-doped tungsten carbide nanoarray as an efficient bifunctional electrocatalyst for water splitting in acid OPEN |  | | Nana Han, Ke R. Yang, Zhiyi Lu, Yingjie Li, Wenwen Xu, Tengfei Gao, Zhao Cai, Ying Zhang, Victor S. Batista, Wen Liu & Xiaoming Sun |  | | Water electrolysis can generate carbon-neutral hydrogen gas from water, yet the required catalysts are often expensive, scarce, and poor at gas release. Here, the authors prepared nitrogen-doped carbon tungstide nanoarrays with high water-splitting activities and bubble-releasing surfaces. |  | | 02 March 2018 | doi: 10.1038/s41467-018-03429-z |  | | Electrocatalysis Nanoscale materials | | MT4-MMP deficiency increases patrolling monocyte recruitment to early lesions and accelerates atherosclerosis OPEN |  | | Cristina Clemente, Cristina Rius, Laura Alonso-Herranz, Mara Martín-Alonso, Ángela Pollán, Emilio Camafeita, Fernando Martínez, Rubén A. Mota, Vanessa Núñez, Cristina Rodríguez, Motoharu Seiki, José Martínez-González, Vicente Andrés, Mercedes Ricote & Alicia G. Arroyo |  | | Matrix metalloproteinases (MMP) are involved in vascular remodeling associated with plaque progression. Little is known about their immune regulatory role in vascular disorders. Here, the authors report that MT4-MMP-deficiency increases the recruitment of patrolling monocytes to early atherosclerotic lesions, which accelerates atherosclerosis. |  | | 02 March 2018 | doi: 10.1038/s41467-018-03351-4 |  | | Atherosclerosis Integrins Mechanisms of disease Peritoneal macrophages | | CryoEM structure of the human SLC4A4 sodium-coupled acid-base transporter NBCe1 OPEN |  | | Kevin W. Huynh, Jiansen Jiang, Natalia Abuladze, Kirill Tsirulnikov, Liyo Kao, Xuesi Shao, Debra Newman, Rustam Azimov, Alexander Pushkin, Z. Hong Zhou & Ira Kurtz |  | | Na+-coupled acid-base membrane transport proteins regulate blood pressure, ion homeostasis and acid-base chemistry. Here the authors present the 3.9 Å resolution cryoEM structure of the sodium-bicarbonate cotransporter NBCe1 and characterize its ion coordination site and ion accessibility pathway with mutagenesis experiments. |  | | 02 March 2018 | doi: 10.1038/s41467-018-03271-3 |  | | Cryoelectron microscopy Transporters | | Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow OPEN |  | | Yafeng Zhu, Lukas M. Orre, Henrik J. Johansson, Mikael Huss, Jorrit Boekel, Mattias Vesterlund, Alejandro Fernandez-Woodbridge, Rui M. M. Branca & Janne Lehtiö |  | | Proteogenomics enables the discovery of protein coding regions and disease-relevant mutations but their verification remains challenging. Here, the authors combine peptide discovery, curation and validation in an integrated proteogenomics workflow, robustly identifying unknown coding regions and mutations. |  | | 02 March 2018 | doi: 10.1038/s41467-018-03311-y |  | | Genome Mass spectrometry Proteome informatics Proteomics | | Strong selection during the last millennium for African ancestry in the admixed population of Madagascar OPEN |  | | Denis Pierron, Margit Heiske, Harilanto Razafindrazaka, Veronica Pereda-loth, Jazmin Sanchez, Omar Alva, Amal Arachiche, Anne Boland, Robert Olaso, Jean-Francois Deleuze, Francois-Xavier Ricaut, Jean-Aimé Rakotoarisoa, Chantal Radimilahy, Mark Stoneking & Thierry Letellier |  | | The population of Madagascar arose from admixture of Austronesian and Bantu genetic backgrounds. Analyzing local ancestry in genomes of 700 Malagasy, Pierron et al. identify signals of recent positive selection for African ancestry in a region on chromosome 1 with implications for physiology and disease risk. |  | | 02 March 2018 | doi: 10.1038/s41467-018-03342-5 |  | | Evolutionary genetics Genome evolution Malaria Population genetics | | Three-dimensional localization of nanoscale battery reactions using soft X-ray tomography OPEN |  | | Young-Sang Yu, Maryam Farmand, Chunjoong Kim, Yijin Liu, Clare P. Grey, Fiona C. Strobridge, Tolek Tyliszczak, Rich Celestre, Peter Denes, John Joseph, Harinarayan Krishnan, Filipe R. N. C. Maia, A. L. David Kilcoyne, Stefano Marchesini, Talita Perciano Costa Leite, Tony Warwick, Howard Padmore, Jordi Cabana & David A. Shapiro |  | | Here the authors show the development of soft X-ray ptychographic tomography to quantify the electrochemical state and resolve phase boundaries throughout the volume of individual nano-particles from a composite battery electrode. |  | | 02 March 2018 | doi: 10.1038/s41467-018-03401-x |  | | Batteries Imaging techniques | | Integrative analysis of omics summary data reveals putative mechanisms underlying complex traits OPEN |  | | Yang Wu, Jian Zeng, Futao Zhang, Zhihong Zhu, Ting Qi, Zhili Zheng, Luke R. Lloyd-Jones, Riccardo E. Marioni, Nicholas G. Martin, Grant W. Montgomery, Ian J. Deary, Naomi R. Wray, Peter M. Visscher, Allan F. McRae & Jian Yang |  | | The identification of the causal gene at a GWAS locus remains to be a challenging task. Here, using the SMR & HEIDI method to integrate GWAS, eQTL and mQTL data, Wu et al. map DNA methylation sites to the transcriptome and thereby prioritize functionally relevant genes for 12 human complex traits. |  | | 02 March 2018 | doi: 10.1038/s41467-018-03371-0 |  | | Data integration Epigenomics Genetics | | Studying light-harvesting models with superconducting circuits OPEN |  | | Anton Potočnik, Arno Bargerbos, Florian A. Y. N. Schröder, Saeed A. Khan, Michele C. Collodo, Simone Gasparinetti, Yves Salathé, Celestino Creatore, Christopher Eichler, Hakan E. Türeci, Alex W. Chin & Andreas Wallraff |  | | Investigating photosynthesis processes in biological samples is challenging due to their complex and disordered structure. Based on analog quantum simulations with superconducting quantum circuits, the authors show how the interplay of quantum coherence and environmental interactions affects energy transport. |  | | 02 March 2018 | doi: 10.1038/s41467-018-03312-x |  | | Biological physics Quantum simulation | | Nfat/calcineurin signaling promotes oligodendrocyte differentiation and myelination by transcription factor network tuning OPEN |  | | Matthias Weider , Laura Julia Starost, Katharina Groll, Melanie Küspert, Elisabeth Sock, Miriam Wedel, Franziska Fröb, Christian Schmitt, Tina Baroti, Anna C. Hartwig, Simone Hillgärtner, Sandra Piefke, Tanja Fadler, Marc Ehrlich, Corinna Ehlert, Martin Stehling, Stefanie Albrecht, Ammar Jabali, Hans R. Schöler, Jürgen Winkler et al. |  | | Oligodendrocyte differentiation is known to depend on transcription factors Sox10, Nkx2.2, and Olig2. Here, the authors show that Nfat/calcineurin signaling contributes to oligodendrocyte differentiation by relieving mutual repression of Nkx2.2 and Olig2. |  | | 02 March 2018 | doi: 10.1038/s41467-018-03336-3 |  | | Differentiation Oligodendrocyte | | Formation of size-dependent and conductive phase on lithium iron phosphate during carbon coating OPEN |  | | Yulong Liu, Jian Liu, Jiajun Wang, Mohammad Norouzi Banis, Biwei Xiao, Andrew Lushington, Wei Xiao, Ruying Li, Tsun-Kong Sham, Guoxian Liang & Xueliang Sun |  | | Coating the active materials of interest with carbon is a widely employed way to boost the performance of lithium ion batteries. Here the authors show the formation of a conductive phase on LiFePO4 during carbon coating, which is size, annealing temperature and reduction atmosphere dependent. |  | | 02 March 2018 | doi: 10.1038/s41467-018-03324-7 |  | | Batteries Mechanical engineering Nanoscale materials Solid-state chemistry | | A mechanism for CO regulation of ion channels OPEN |  | | Sofia M. Kapetanaki, Mark J. Burton, Jaswir Basran, Chiasa Uragami, Peter C. E. Moody, John S. Mitcheson, Ralf Schmid, Noel W. Davies, Pierre Dorlet, Marten H. Vos, Nina M. Storey & Emma Raven |  | | Despite being highly toxic, carbon monoxide (CO) is also essential as an intracellular signalling molecule, but CO-dependent signalling is poorly understood. Here, authors employ spectroscopic and electrophysiology methods and find that CO activates KATP channels via SUR2A, a heme-regulated receptor. |  | | 02 March 2018 | doi: 10.1038/s41467-018-03291-z |  | | Metalloproteins Potassium channels | | Reconstruction of complex single-cell trajectories using CellRouter OPEN |  | | Edroaldo Lummertz da Rocha, R. Grant Rowe, Vanessa Lundin, Mohan Malleshaiah, Deepak Kumar Jha, Carlos R. Rambo, Hu Li, Trista E. North, James J. Collins & George Q. Daley |  | | Single cell analysis provides insight into cell states and transitions, but to interpret the data, improved algorithms are needed. Here, the authors present CellRouter as a method to analyse single-cell trajectories from RNA-sequencing data, and provide insight into erythroid, myeloid and lymphoid differentiation. |  | | 01 March 2018 | doi: 10.1038/s41467-018-03214-y |  | | Haematopoietic stem cells Regulatory networks Stem-cell differentiation Systems analysis | | Elongator and codon bias regulate protein levels in mammalian peripheral neurons OPEN |  | | Joy Goffena, Frances Lefcort, Yongqing Zhang, Elin Lehrmann, Marta Chaverra, Jehremy Felig, Joseph Walters, Richard Buksch, Kevin G. Becker & Lynn George |  | | Familial dysautonomia is linked to mutations in IKBKAP, a scaffolding protein for the Elongator complex, which regulates codon-biased gene translation in yeast. Here the authors show in mammalian neurons that IKBKAP loss alters expression of codon-biased genes, including some involved in DNA damage. |  | | 01 March 2018 | doi: 10.1038/s41467-018-03221-z |  | | Cellular neuroscience Gene expression Gene ontology Proteomics | | Whole-exome sequencing reveals the origin and evolution of hepato-cholangiocarcinoma OPEN |  | | Anqiang Wang, Liangcai Wu, Jianzhen Lin, Longzhe Han, Jin Bian, Yan Wu, Simon C. Robson, Lai Xue, Yunxia Ge, Xinting Sang, Wenze Wang & Haitao Zhao |  | | Hepatocellular-cholangiocarcinoma (H-ChC) is a rare subtype of liver cancer with features of hepatocellular carcinoma and intrahepatic cholangiocarcinoma. Here, the authors utilize whole exome sequencing to highlight the monoclonal origin and stemness of H-ChC, as well as substantial intratumoral heterogeneity. |  | | 01 March 2018 | doi: 10.1038/s41467-018-03276-y |  | | Cancer genomics Liver cancer | | De novo adipocyte differentiation from Pdgfrβ+ preadipocytes protects against pathologic visceral adipose expansion in obesity OPEN |  | | Mengle Shao, Lavanya Vishvanath, Napoleon C. Busbuso, Chelsea Hepler, Bo Shan, Ankit X. Sharma, Shiuhwei Chen, Xinxin Yu, Yu A. An, Yi Zhu, William L. Holland & Rana K. Gupta |  | | Adipocyte hyperplasia is thought to have beneficial metabolic effects in obesity, but definitive evidence is lacking. Here, Shao et al. promote de novo formation of adipocytes in visceral white adipose tissue (WAT) of adult mice through inducible overexpression of Pparg in Pdgfrβ+ preadipocytes and show that this protects from pathological WAT remodeling. |  | | 01 March 2018 | doi: 10.1038/s41467-018-03196-x |  | | Diabetes Metabolic disorders Obesity | | Early circulating tumor DNA dynamics and clonal selection with palbociclib and fulvestrant for breast cancer OPEN |  | | Ben O’Leary, Sarah Hrebien, James P. Morden, Matthew Beaney, Charlotte Fribbens, Xin Huang, Yuan Liu, Cynthia Huang Bartlett, Maria Koehler, Massimo Cristofanilli, Isaac Garcia-Murillas, Judith M. Bliss & Nicholas C. Turner |  | | Circulating tumor DNA (ctDNA) may provide a prediction of treatment response, but could be impacted by tumor heterogeneity. Here, the authors investigate ctDNA in CDK4/6 inhibitor treatment in advanced breast cancer, finding ctDNA levels predict progression-free survival and anticipate clonal selection. |  | | 01 March 2018 | doi: 10.1038/s41467-018-03215-x |  | | Breast cancer Cancer genomics Tumour biomarkers | | Conserved roles of C. elegans and human MANFs in sulfatide binding and cytoprotection OPEN |  | | Meirong Bai, Roman Vozdek, Aleš Hnízda, Chenxiao Jiang, Bingying Wang, Ladislav Kuchar, Tiejun Li, Yuefan Zhang, Chase Wood, Liang Feng, Yongjun Dang & Dengke K. Ma |  | | MANF is a secreted ER stress-inducible protein that protects neurons, pancreatic β cells and cardiomyocytes from cell death under oxidative stress, hypoxic or ischemic conditions. Here the authors show that MANF confers cytoprotection through direct binding to sulfatide followed by cellular uptake in both C. elegans and mammalian cells. |  | | 01 March 2018 | doi: 10.1038/s41467-018-03355-0 |  | | Cell signalling Eukaryote Lipids |  | |  | | | Latest Author Corrections | | | | | | Author Correction: Cancer-associated fibroblasts induce metalloprotease-independent cancer cell invasion of the basement membrane OPEN |  | | Alexandros Glentis, Philipp Oertle, Pascale Mariani, Aleksandra Chikina, Fatima El Marjou, Youmna Attieh, Francois Zaccarini, Marick Lae, Damarys Loew, Florent Dingli, Philemon Sirven, Marie Schoumacher, Basile G. Gurchenkov, Marija Plodinec & Danijela Matic Vignjevic |  | | 07 March 2018 | doi: 10.1038/s41467-018-03304-x |  | | Cancer microenvironment Cell invasion |  | |  | | | Latest Publisher Corrections | | | | | | Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology OPEN |  | | James C. Stegen, Tim Johnson, James K. Fredrickson, Michael J. Wilkins, Allan E. Konopka, William C. Nelson, Evan V. Arntzen, William B. Chrisler, Rosalie K. Chu, Sarah J. Fansler, Emily B. Graham, David W. Kennedy, Charles T. Resch, Malak Tfaily & John Zachara |  | | 07 March 2018 | doi: 10.1038/s41467-018-03572-7 |  | | Carbon cycle Geochemistry Hydrology Microbial ecology | | Publisher Correction: Beyond a phenomenological description of magnetostriction OPEN |  | | A. H. Reid , X. Shen, P. Maldonado, T. Chase, E. Jal, P. W. Granitzka, K. Carva, R. K. Li, J. Li, L. Wu, T. Vecchione, T. Liu, Z. Chen, D. J. Higley, N. Hartmann, R. Coffee, J. Wu, G. L. Dakowski, W. F. Schlotter, H. Ohldag et al. |  | | 07 March 2018 | doi: 10.1038/s41467-018-03389-4 |  | | Magnetic properties and materials Nanoparticles Structure of solids and liquids | | Publisher Correction: IgG1 memory B cells keep the memory of IgE responses OPEN |  | | Jin-Shu He, Sharrada Subramaniam, Vipin Narang, Kandhadayar Srinivasan, Sean P. Saunders, Daniel Carbajo, Tsao Wen-Shan, Nur Hidayah Hamadee, Josephine Lum, Andrea Lee, Jinmiao Chen, Michael Poidinger, Francesca Zolezzi, Juan J. Lafaille & Maria A. Curotto de Lafaille |  | | 01 March 2018 | doi: 10.1038/s41467-018-03364-z |  | | Allergy Immunogenetics Immunological memory |  | |  | | | Advertisement |  | nature.com webcasts Nature Research Custom presents a webcast on: Precision Health: Using Blood Biomarkers to Detect and Prevent Disease Date: Thursday, March 29, 2018 Register for FREE Sponsored by: Quanterix | | |  | | | Advertisement |  |  | | | Ionis Pharmaceuticals, Nature Structural and Molecular Biology & Nature Biotechnology present: RNA at the Bench & Bedside October 8-10, La Jolla, USA RNA therapeutics is poised to deliver major advances. This conference will discuss the many roles of RNAs and the translation of basic science into new therapies. 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