Wednesday, March 28, 2018

Nature Chemical Biology Contents: April 2018, Volume 14 No 4

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TABLE OF CONTENTS

April 2018 Volume 14, Issue 4

Research Highlights
News & Views
Perspectives
Brief Communications
Articles
 
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Research Highlights

 

Specialized splicing    p327
Caitlin Deane
doi:10.1038/s41589-018-0027-2

Mix and match    p327
Karin Kuehnel
doi:10.1038/s41589-018-0028-1

A 'cis'ted localization    p327
Mirella Bucci
doi:10.1038/s41589-018-0029-0

RaPID hookup    p327
Grant Miura
doi:10.1038/s41589-018-0030-7

News & Views

 

Trp-ing upon new repressors    pp328 - 329
Andreas K. Brödel & Mark Isalan
doi:10.1038/s41589-018-0012-9

Folding against the wind    pp329 - 330
Frederick Stull & James C. A. Bardwell
doi:10.1038/s41589-018-0016-5

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Perspectives

 

Whole-organism phenotypic screening for anti-infectives promoting host health    pp331 - 341
Anne E. Clatworthy, Keith P. Romano & Deborah T. Hung
doi:10.1038/s41589-018-0018-3

Targeting the host during antibiotic discovery efforts is a viable strategy, and the approach has benefited from phenotypic screening of model organisms such as worms, zebrafish, and mice.

 

 

Brief Communications

 

Oxidative demethylation of algal carbohydrates by cytochrome P450 monooxygenases    pp342 - 344
Lukas Reisky, Hanna C. Büchsenschütz, Jennifer Engel, Tao Song, Thomas Schweder et al.
doi:10.1038/s41589-018-0005-8

The discovery of cytochrome P450 monooxygenases that catalyze oxidative demethylation of 6-O-methyl-D-galactose reveals a new activity of cytochrome P450 enzymes and their role in polysaccharide biomass degradation in marine bacteria.

 

 

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Articles

 

Structural basis of the Cope rearrangement and cyclization in hapalindole biogenesis    pp345 - 351
Sean A. Newmister, Shasha Li, Marc Garcia-Borràs, Jacob N. Sanders, Song Yang et al.
doi:10.1038/s41589-018-0003-x

The structure of a Stig cyclase, HpiC1, reveals how it catalyzes Cope rearrangement and 6-exo-trig cyclization, including how it controls the position of electrophilic aromatic substation that distinguishes hapalindole from fischerindole alkaloids.

 

 

A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters    pp352 - 360
Kiryl D. Piatkevich, Erica E. Jung, Christoph Straub, Changyang Linghu, Demian Park et al.
doi:10.1038/s41589-018-0004-9

Directed evolution of opsins via robotic high-content screening finds a fluorescent reporter of voltage that is simultaneously optimized for brightness, localization and voltage sensitivity and is applicable in three model systems.

 

 

Directed evolution of a synthetic phylogeny of programmable Trp repressors    pp361 - 367
Jared W. Ellefson, Michael P. Ledbetter & Andrew D. Ellington
doi:10.1038/s41589-018-0006-7

Directed evolution of Trp repressor (TrpR) variants that are responsive to halogenated tryptophan analogs and recognize new operator sites serve as useful components for constructing complex gene expression networks.

 

 

Structural basis of protein arginine rhamnosylation by glycosyltransferase EarP    pp368 - 374
Toru Sengoku, Takehiro Suzuki, Naoshi Dohmae, Chiduru Watanabe, Teruki Honma et al.
doi:10.1038/s41589-018-0002-y

The crystal structure of EarP, an inverting glycosyltransferase that generates rhamnosyl-arginine modifications, suggests that the enzyme uses an SN2 reaction mechanism that may involve perturbation of the donor sugar nucleotide conformation.

 

 

A lanthipeptide library used to identify a protein–protein interaction inhibitor    pp375 - 380
Xiao Yang, Katherine R. Lennard, Chang He, Mark C. Walker, Andrew T. Ball et al.
doi:10.1038/s41589-018-0008-5

The substrate-tolerant lanthipeptide synthetase ProcM enables the construction of a plasmid-encoded library of bicyclic lanthipeptides, from which an inhibitor of the p6–UEV protein–protein interaction is identified by a reverse two-hybrid screen.

 

 

Resistance to nonribosomal peptide antibiotics mediated by d-stereospecific peptidases    pp381 - 387

doi:10.1038/s41589-018-0009-4

Networking-associated genome mining on bacterial genomes followed by chemical and enzymatic analysis identified a mechanism of resistance toward nonribosomal peptide antibiotics based on hydrolytic cleavage by d-stereospecific peptidases.

 

 

Chaperones convert the energy from ATP into the nonequilibrium stabilization of native proteins    pp388 - 395

doi:10.1038/s41589-018-0013-8

A nonequilibrium thermodynamic model can explain how molecular chaperones such as GroEL can use the energy from ATP hydrolysis to maintain substrate proteins in an active state, even under conditions that favor the substrate's inactive unfolded state.

 

An optically controlled probe identifies lipid-gating fenestrations within the TRPC3 channel    pp396 - 404
Michaela Lichtenegger, Oleksandra Tiapko, Barbora Svobodova, Thomas Stockner, Toma N. Glasnov et al.
doi:10.1038/s41589-018-0015-6

A photoswitchable diacylglycerol enabled a screen that found critical TRPC3 lipid-sensing residues and identified a lateral fenestration in the pore domain that allows lipids to protrude into the permeation pathway to control channel gating.

 

 

Functional TRIM24 degrader via conjugation of ineffectual bromodomain and VHL ligands    pp405 - 412
Lara N. Gechijian, Dennis L. Buckley, Matthew A. Lawlor, Jaime M. Reyes, Joshiawa Paulk et al.
doi:10.1038/s41589-018-0010-y

Selective TRIM24 degradation is achieved by co-opting the VHL E3 ubiquitin ligase machinery. TRIM24 degradation outperforms bromodomain inhibition, with an enhanced antiproliferative effect in acute leukemia, a novel context of TRIM24 dependency.

 

 

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