Tuesday, January 16, 2018

Nature Chemical Biology Contents: February 2018, Volume 14 No 2 pp 103 - 186

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TABLE OF CONTENTS

February 2018 Volume 14, Issue 2

Commentary
Research Highlights
News and Views
Articles
Erratum

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Commentary

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Toward an orthogonal central dogma   pp103 - 106
Chang C Liu, Michael C Jewett, Jason W Chin and Chris A Voigt
doi:10.1038/nchembio.2554
The central dogma processes of DNA replication, transcription, and translation are responsible for the maintenance and expression of every gene in an organism. An orthogonal central dogma may insulate genetic programs from host regulation and allow expansion of the roles of these processes within the cell.

Research Highlights

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Synthetic biology: License to kill | Cancer therapy: A path of DSF destruction | Cell biology: Eaten up from the inside | RNA Splicing: Making the cut


News and Views

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Natural products: Tapping into personalized chemistry   pp108 - 109
Jack R Davison and Carole A Bewley
doi:10.1038/nchembio.2560
By integrating metagenomics, spectroscopy and synthetic biology, the individualized chemistry of small reef-dwelling organisms and their associated microbiota can be characterized in exquisite detail, unlocking a wealth of structural diversity for the development of new drugs.

See also: Article by Smith et al.

Plant hormones: Metabolic end run to jasmonate   pp109 - 110
Gregg A Howe
doi:10.1038/nchembio.2553
The lipid-derived hormone jasmonate promotes durable resistance of plants to a myriad of herbivores and pathogens. New evidence reveals an alternative pathway for the terminal steps of jasmonate biosynthesis and further advances our understanding of bioactive oxylipins in the plant kingdom.

See also: Article by Chini et al.

Drug development: Allosteric inhibitors hit USP7 hard   pp110 - 111
Wei Zhang and Sachdev S Sidhu
doi:10.1038/nchembio.2557
A potent and specific small-molecule inhibitor of a long-sought-after anticancer drug target, USP7, that acts allosterically to inhibit MDM2-stabilizing activity foretells of more allosteric inhibitors for deubiquitinases and E3 ligases.

See also: Article by Gavory et al.

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Articles

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Human antibody-based chemically induced dimerizers for cell therapeutic applications   pp112 - 117
Zachary B Hill, Alexander J Martinko, Duy P Nguyen and James A Wells
doi:10.1038/nchembio.2529



Selections with a phage-displayed antibody library against an existing protein-small-molecule complex enabled the generation of antibody-based chemically induced dimerizers (AbCIDs) with the properties necessary for use in regulating cell therapies.
Chemical compounds

Discovery and characterization of highly potent and selective allosteric USP7 inhibitors   pp118 - 125
Gerald Gavory, Colin R O'Dowd, Matthew D Helm, Jakub Flasz, Elias Arkoudis et al.
doi:10.1038/nchembio.2528



A selective inhibitor of the deubiquitinase USP7 binds an allosteric site to inhibit its MDM2-stabilizing activity, resulting in stabilization of p53 and p21, which confers hypersensitivity to cancer cells for killing by the compound.
Chemical compounds
See also: News and Views by Zhang & Sidhu

Structure-inspired design of β-arrestin-biased ligands for aminergic GPCRs   pp126 - 134
John D McCorvy, Kyle V Butler, Brendan Kelly, Katie Rechsteiner, Joel Karpiak et al.
doi:10.1038/nchembio.2527



Development of D2 dopamine receptor ligands biased for β-arrestin recruitment based on a receptor homology model that identified conserved ligand contacts within the TM5 and EL2 regions as important for biased signaling.
Chemical compounds

Inhibiting mitochondrial phosphate transport as an unexploited antifungal strategy   pp135 - 141
Catherine A McLellan, Benjamin M Vincent, Norma V Solis, Alex K Lancaster, Lucas B Sullivan et al.
doi:10.1038/nchembio.2534



A potent inhibitor of the conditionally essential mitochondrial phosphate carrier protein Mir1 in the fungi Candida albicans diminishes mitochondrial oxygen consumption and causes dramatic changes in concentrations of citrate and succinate.
Chemical compounds

Engineered synthetic scaffolds for organizing proteins within the bacterial cytoplasm   pp142 - 147
Matthew J Lee, Judith Mantell, Lorna Hodgson, Dominic Alibhai, Jordan M Fletcher et al.
doi:10.1038/nchembio.2535



Two complementary coiled-coil peptides and a bacterial microcompartment shell protein are combined to construct cytoscaffolds within Escherichia coli cells. Targeting enzymes to the cytoplasmic scaffold results in colocalization and improved metabolic flux.

A role for 2-Cys peroxiredoxins in facilitating cytosolic protein thiol oxidation   pp148 - 155
Sarah Stocker, Michael Maurer, Thomas Ruppert and Tobias P Dick
doi:10.1038/nchembio.2536



Cytosolic 2-Cys peroxiredoxins can enable, rather than compete with, rapid thiol oxidation by relaying H2O2-derived oxidizing equivalents to other proteins, suggesting a broadened role for peroxiredoxins as sensors and transmitters of H2O2 signals.

Expression system for structural and functional studies of human glycosylation enzymes   pp156 - 162
Kelley W Moremen, Annapoorani Ramiah, Melissa Stuart, Jason Steel, Lu Meng et al.
doi:10.1038/nchembio.2539



A modular protein expression system enables the structural and functional characterization of human glycosyltransferases, glycoside hydrolases and other carbohydrate-modifying enzymes.

Pharmacological perturbation of CDK9 using selective CDK9 inhibition or degradation   pp163 - 170
Calla M Olson, Baishan Jiang, Michael A Erb, Yanke Liang, Zainab M Doctor et al.
doi:10.1038/nchembio.2538



A selective small-molecule degrader of CDK9 was generated by conjugating an imide to SNS-032, a promiscuous ATP-site-directed CDK binder. The pharmacological consequences of CDK9 degradation versus inhibition were compared.
Chemical compounds

An OPR3-independent pathway uses 4,5-didehydrojasmonate for jasmonate synthesis   pp171 - 178
Andrea Chini, Isabel Monte, Angel M Zamarreno, Mats Hamberg, Steve Lassueur et al.
doi:10.1038/nchembio.2540



OPR3 is required to reduce the JA-Ile precursor OPDA. Analyses of JA levels in a loss-of-function opr3-3 mutant identified an OPR3-independent pathway for JA-Ile biosynthesis, based on OPDA conversion to 4,5-ddh-JA and reduction to JA by OPR2.
Chemical compounds
See also: News and Views by Howe

Accessing chemical diversity from the uncultivated symbionts of small marine animals   pp179 - 185
Thomas E Smith, Christopher D Pond, Elizabeth Pierce, Zachary P Harmer, Jason Kwan et al.
doi:10.1038/nchembio.2537



A combination of spectroscopy, metagenomics, and synthetic biology enables the characterization of the antiviral divamides, a class of lanthipeptide natural products in which even minor changes in structure lead to different biological activities.
Chemical compounds
See also: News and Views by Davison & Bewley

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Erratum

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Errata: Continuous directed evolution of aminoacyl-tRNA synthetases   p186
David I Bryson, Chenguang Fan, Li-Tao Guo, Corwin Miller, Dieter Soll et al.
doi:10.1038/nchembio0218-186

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