The ISME Journal - Table of Contents alert Volume 12 Issue 1

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TABLE OF CONTENTS Volume 12, Issue 1 (January 2018) In this issue Original Articles Short Communications Also new AOP   Sign up for e-alerts Recommend to your library Web feed Subscribe Original Articles Top A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer OPEN Benjamin J Tully, C Geoff Wheat, Brain T Glazer and Julie A Huber ISME J 2018 12: 1-16; advance online publication, November 3, 2017; 10.1038/ismej.2017.187 Abstract | Full Text A population genomics approach shows widespread geographical distribution of cryptic genomic forms of the symbiotic fungus Rhizophagus irregularis OPEN Romain Savary, Frédéric G Masclaux, Tania Wyss, Germain Droh, Joaquim Cruz Corella, Ana Paula Machado, Joseph B Morton and Ian R Sanders ISME J 2018 12: 17-30; advance online publication, October 13, 2017; 10.1038/ismej.2017.153 Abstract | Full Text Ecological and genomic profiling of anaerobic methane-oxidizing archaea in a deep granitic environment Kohei Ino, Alex W Hernsdorf, Uta Konno, Mariko Kouduka, Katsunori Yanagawa, Shingo Kato, Michinari Sunamura, Akinari Hirota, Yoko S Togo, Kazumasa Ito, Akari Fukuda, Teruki Iwatsuki, Takashi Mizuno, Daisuke D Komatsu, Urumu Tsunogai, Toyoho Ishimura, Yuki Amano, Brian C Thomas, Jillian F Banfield and Yohey Suzuki ISME J 2018 12: 31-47; advance online publication, September 8, 2017; 10.1038/ismej.2017.140 Abstract | Full Text Electrically conductive pili from pilin genes of phylogenetically diverse microorganisms David JF Walker, Ramesh Y Adhikari, Dawn E Holmes, Joy E Ward, Trevor L Woodard, Kelly P Nevin and Derek R Lovley ISME J 2018 12: 48-58; advance online publication, September 5, 2017; 10.1038/ismej.2017.141 Abstract | Full Text Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton OPEN Anny Cárdenas, Matthew J Neave, Mohamed Fauzi Haroon, Claudia Pogoreutz, Nils Rädecker, Christian Wild, Astrid Gärdes and Christian R Voolstra ISME J 2018 12: 59-76; advance online publication, September 12, 2017; 10.1038/ismej.2017.142 Abstract | Full Text Evidence for a primate origin of zoonotic Helicobacter suis colonizing domesticated pigs Bram Flahou, Mirko Rossi, Jaco Bakker, Jan AM Langermans, Edwin Heuvelman, Jay V Solnick, Miriam E Martin, Jani O’Rourke, Le Duc Ngoan, Nguyen Xuan Hoa, Masahiko Nakamura, Anders Øverby, Hidenori Matsui, Hiroyoshi Ota, Takehisa Matsumoto, Dennis L Foss, Laurice A Kopta, Oladipo Omotosho, Maria Pia Franciosini, Patrizia Casagrande Proietti, Aizhen Guo, Han Liu, Gabriela Borilova, Ana Paula Bracarense, Sara K Lindén, Sofie De Bruyckere, Guangzhi Zhang, Chloë De Witte, Annemieke Smet, Frank Pasmans, Richard Ducatelle, Jukka Corander and Freddy Haesebrouck ISME J 2018 12: 77-86; advance online publication, September 8, 2017; 10.1038/ismej.2017.145 Abstract | Full Text Microbial megacities fueled by methane oxidation in a mineral spring cave OPEN Clemens Karwautz, Günter Kus, Michael Stöckl, Thomas R Neu and Tillmann Lueders ISME J 2018 12: 87-100; advance online publication, September 26, 2017; 10.1038/ismej.2017.146 Abstract | Full Text Adaptive evolution of rhizobial symbiotic compatibility mediated by co-evolved insertion sequences OPEN Ran Zhao, Li Xue Liu, Yun Zeng Zhang, Jian Jiao, Wen Jing Cui, Biliang Zhang, Xiao Lin Wang, Meng Lin Li, Yi Chen, Zhu Qing Xiong, Wen Xin Chen and Chang Fu Tian ISME J 2018 12: 101-111; advance online publication, August 11, 2017; 10.1038/ismej.2017.136 Abstract | Full Text DNA-SIP based genome-centric metagenomics identifies key long-chain fatty acid-degrading populations in anaerobic digesters with different feeding frequencies OPEN Ryan M Ziels, Diana Z Sousa, H David Stensel and David A C Beck ISME J 2018 12: 112-123; advance online publication, September 12, 2017; 10.1038/ismej.2017.143 Abstract | Full Text Tremblaya phenacola PPER: an evolutionary beta-gammaproteobacterium collage Rosario Gil, Carlos Vargas-Chavez, Sergio López-Madrigal, Diego Santos-García, Amparo Latorre and Andrés Moya ISME J 2018 12: 124-135; advance online publication, September 15, 2017; 10.1038/ismej.2017.144 Abstract | Full Text Metabolite toxicity slows local diversity loss during expansion of a microbial cross-feeding community Felix Goldschmidt, Roland R Regoes and David R Johnson ISME J 2018 12: 136-144; advance online publication, September 15, 2017; 10.1038/ismej.2017.147 Abstract | Full Text Bacterial SBP56 identified as a Cu-dependent methanethiol oxidase widely distributed in the biosphere OPEN Özge Eyice, Nataliia Myronova, Arjan Pol, Ornella Carrión, Jonathan D Todd, Tom J Smith, Stephen J Gurman, Adam Cuthbertson, Sophie Mazard, Monique ASH Mennink-Kersten, Timothy DH Bugg, Karl Kristoffer Andersson, Andrew WB Johnston, Huub JM Op den Camp and Hendrik Schäfer ISME J 2018 12: 145-160; advance online publication, October 24, 2017; 10.1038/ismej.2017.148 Abstract | Full Text Rare symbionts may contribute to the resilience of coral–algal assemblages OPEN Maren Ziegler, Víctor M Eguíluz, Carlos M Duarte and Christian R Voolstra ISME J 2018 12: 161-172; advance online publication, December 1, 2017; 10.1038/ismej.2017.151 Abstract | Full Text Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale OPEN Pauline Bernardo, Tristan Charles-Dominique, Mohamed Barakat, Philippe Ortet, Emmanuel Fernandez, Denis Filloux, Penelope Hartnady, Tony A Rebelo, Stephen R Cousins, François Mesleard, Damien Cohez, Nicole Yavercovski, Arvind Varsani, Gordon W Harkins, Michel Peterschmitt, Carolyn M Malmstrom, Darren P Martin and Philippe Roumagnac ISME J 2018 12: 173-184; advance online publication, October 20, 2017; 10.1038/ismej.2017.155 Abstract | Full Text Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria Stefan M Neuenschwander, Rohit Ghai, Jakob Pernthaler and Michaela M Salcher ISME J 2018 12: 185-198; advance online publication, October 13, 2017; 10.1038/ismej.2017.156 Abstract | Full Text Temporal dynamics of uncultured viruses: a new dimension in viral diversity Ksenia Arkhipova, Timofey Skvortsov, John P Quinn, John W McGrath, Christopher CR Allen, Bas E Dutilh, Yvonne McElarney and Leonid A Kulakov ISME J 2018 12: 199-211; advance online publication, October 13, 2017; 10.1038/ismej.2017.157 Abstract | Full Text Influence of resistance breeding in common bean on rhizosphere microbiome composition and function Lucas William Mendes, Jos M Raaijmakers, Mattias de Hollander, Rodrigo Mendes and Siu Mui Tsai ISME J 2018 12: 212-224; advance online publication, October 13, 2017; 10.1038/ismej.2017.158 Abstract | Full Text Geobiological feedbacks and the evolution of thermoacidophiles OPEN Daniel R Colman, Saroj Poudel, Trinity L Hamilton, Jeff R Havig, Matthew J Selensky, Everett L Shock and Eric S Boyd ISME J 2018 12: 225-236; advance online publication, October 13, 2017; 10.1038/ismej.2017.162 Abstract | Full Text Recurrent patterns of microdiversity in a temperate coastal marine environment OPEN Meghan Chafee, Antonio Fernàndez-Guerra, Pier Luigi Buttigieg, Gunnar Gerdts, A Murat Eren, Hanno Teeling and Rudolf I Amann ISME J 2018 12: 237-252; advance online publication, October 24, 2017; 10.1038/ismej.2017.165 Abstract | Full Text Aquatic urban ecology at the scale of a capital: community structure and interactions in street gutters OPEN Vincent Hervé, Boris Leroy, Albert Da Silva Pires and Pascal Jean Lopez ISME J 2018 12: 253-266; advance online publication, October 13, 2017; 10.1038/ismej.2017.166 Abstract | Full Text Polymorphism of antibiotic-inactivating enzyme driven by ecology expands the environmental resistome Dae-Wi Kim, Cung Nawl Thawng, Jung-Hye Choi, Kihyun Lee and Chang-Jun Cha ISME J 2018 12: 267-276; advance online publication, October 13, 2017; 10.1038/ismej.2017.168 Abstract | Full Text The bacterium Wolbachia exploits host innate immunity to establish a symbiotic relationship with the dengue vector mosquito Aedes aegypti OPEN Xiaoling Pan, Andrew Pike, Deepak Joshi, Guowu Bian, Michael J McFadden, Peng Lu, Xiao Liang, Fengrui Zhang, Alexander S Raikhel and Zhiyong Xi ISME J 2018 12: 277-288; advance online publication, November 3, 2017; 10.1038/ismej.2017.174 Abstract | Full Text Short Communications Top Molecular evidence strongly supports deadwood-inhabiting fungi exhibiting unexpected tree species preferences in temperate forests OPEN Witoon Purahong, Tesfaye Wubet, Dirk Krüger and François Buscot ISME J 2018 12: 289-295; advance online publication, October 31, 2017; 10.1038/ismej.2017.177 Abstract | Full Text Dispersal alters bacterial diversity and composition in a natural community Michaeline B N Albright and Jennifer B H Martiny ISME J 2018 12: 296-299; advance online publication, October 20, 2017; 10.1038/ismej.2017.161 Abstract | Full Text Highly structured prokaryote communities exist within the skeleton of coral colonies Vanessa R Marcelino, Madeleine JH van Oppen and Heroen Verbruggen ISME J 2018 12: 300-303; advance online publication, October 20, 2017; 10.1038/ismej.2017.164 Abstract | Full Text Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates Jürgen F H Strassert, Anna Karnkowska, Elisabeth Hehenberger, Javier del Campo, Martin Kolisko, Noriko Okamoto, Fabien Burki, Jan Janouškovec, Camille Poirier, Guy Leonard, Steven J Hallam, Thomas A Richards, Alexandra Z Worden, Alyson E Santoro and Patrick J Keeling ISME J 2018 12: 304-308; advance online publication, October 10, 2017; 10.1038/ismej.2017.167 Abstract | Full Text Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. The contents of the Natureevents Directory are now live. The digital version is available here. Find the latest scientific conferences, courses, meetings and symposia on natureevents.com. For event advertising opportunities across the Nature Publishing Group portfolio please contact natureevents@nature.com More Nature Events Please note that you need to be a subscriber or site-licence holder to enjoy full-text access to The ISME Journal. In order to do so, please purchase a subscription. You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/nams/svc/myaccount (You will need to log in to be recognised as a nature.com registrant). For further technical assistance, please contact our registration department. For print subscription enquiries, please contact our subscription department. 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