Thursday, December 14, 2017

Nature contents: 14 December 2017

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  journal cover  
Nature Volume 552 Issue 7684
 
This Week  
 
 
Editorials  
 
 
 
Loss of net neutrality could harm research
Moves to create a multi-speed Internet could push science into the slow lane.
Bureaucratic drag dents Japan’s nuclear science
Japan needs a better way to assess whether research reactors are safe to re-open.
How to avoid glib interdisciplinarity
To make progress on the grand challenges, authors, reviewers and editors must take the time to respect each others’ expertise and blind spots.
 



Eppendorf Award for Young European Investigators 2018
www.eppendorf.com/award
 
Prize money 20,000 EUR

Eppendorf Award 2018: Apply now online! 
www.eppendorf.com/award/application

Application period October 1, 2017, until January 15, 2018

World View  
 
 
 
Zimbabwe’s new government must commit to science
As a new president takes office, scientists in the country and beyond should urge the administration to make science a priority, says Dexter Tagwireyi.
 
Seven Days  
 
 
 
Dodgy citations, fusion milestone and a skeleton called Little Foot
The week in science: 8–14 December 2017.
Research Highlights  
 
 
 
This issue's Research Highlights
Selections from the scientific literature.
 
 

Eppendorf Award 2017 for research on signal processing in the retina
 
In 2017, the prize was awarded to Tom Baden, PhD, neuroscientist at the University of Sussex, Brighton, UK.
 
Click here to see the video from the Award ceremony 2017. 
 
Interested in applying for the Eppendorf Award 2018? To learn more click here 
 
 
News in Focus
 
Nine researchers sue University of Rochester over sexual-harassment allegations
Lawsuit alleges that the institution mishandled complaints about cognitive scientist Florian Jaeger.
Alexandra Witze
  Tasmanian tiger genome offers clues to its extinction
Geneticists analyse DNA from preserved pup, more than 80 years after the last of its kind died.
Ewen Callaway
Acupuncture in cancer study reignites debate about controversial technique
Large study suggests acupuncture could help women stick with unpleasant cancer treatments.
Jo Marchant
  US graduate students in uproar over proposed tax hike
Worries over the cost of an education spill over into protests.
Helen Shen
Argentinian geoscientist faces criminal charges over glacier survey
Government researcher Ricardo Villalba stands accused of shaping a study to benefit mining interests.
Jeff Tollefson, Emiliano Rodríguez Mega
   
Features  
 
 
 
The science that’s never been cited
Nature investigates how many papers really end up without a single citation.
Richard Van Noorden
Multimedia  
 
 
Nature: 14 December 2017
This week, electric-eel inspired batteries, virus inspired protein shells, and modelling magma viscosity.
Correction  
 
 
DNA self-assembly scaled up
 
 
Nature Index 2017: Innovation

The Nature Index Innovation supplement examines the link between high-quality research and the commercialization of products and services, with particular focus on scientific discoveries and its economic potential.

Read the full supplement free for six months
 
 
Comment
 
Deploy vaccines to fight superbugs
Immunizations combined with antibiotics could be our best shot at combating drug-resistant microbes, argue Rino Rappuoli, David E. Bloom and Steve Black.
Rino Rappuoli, David E. Bloom, Steve Black
Five priorities for weather and climate research
Adapt to how data are made and used, urge Øystein Hov and colleagues.
Øystein Hov, Deon Terblanche, Sarah Jones et al.
Books and Arts  
 
 
 
Planetariums and the rise of spectacular science
Marek Kukula enjoys a cultural history of the theatres that give us a taste of space.
Marek Kukula
A manifesto for slow science, the biology of personal space, and an intimate look at the neuroscience of food: Books in brief
Barbara Kiser reviews five of the week’s best science picks.
Barbara Kiser
Lyme disease laid bare
James G. Logan hails a study of the controversial tick-borne condition.
James G. Logan
Correspondence  
 
 
 
Standardize future device connections for computers
Ricardo Borges
  Pricing not enough for deep carbon cuts
Michael Mehling, Endre Tvinnereim
Medical legacy of sanctions in Iran
Reza Heidari, Mostafa Akbariqomi, Gholamreza Tavoosidana
  Snow leopard conservation status is spot on
Tom McCarthy
How to spare half a planet
Andrew Balmford, Rhys Green
   
Obituary  
 
 
 
Ronald Breslow (1931–2017)
Organic chemist who took inspiration from nature.
Virginia W. Cornish
 
 
Specials
 
Outline  
 
 
 
Spinal-cord injury: spurring regrowth
David Holmes
  Repairing the neural highway
David Holmes
Produced with support from
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SPOTLIGHT  
 
 
 
Chile’s chance to embrace science for the twenty-first century
The country excels at stargazing, but it must boost its expertise to find a niche in a globalized world.
Aleszu Bajak
New tricks from old dogs join the fight against ageing
The drive to find treatments that offer a long and healthy life is maturing.
Neil Savage
 
 
Research
 
NEW ONLINE  
 
 
 
Origin and differentiation of human memory CD8 T cells after vaccination
In vivo deuterium labelling reveals a quiescent population of long-lived human virus-specific memory CD8 T cells that maintain the epigenetic landscape of effector cells, which facilitates rapid responses to pathogen re-exposure.
Mechanisms of mTORC1 activation by RHEB and inhibition by PRAS40
The cryo-electron microscopy and crystal structures of several mTORC1 complexes, and accompanying biochemical analyses, shed light on how mTORC1 is regulated and how cancer mutations lead to its hyperactivation.
Convergent evolution of bilaterian nerve cords
In bilaterian animals, the final configurations of central nervous systems seem unrelated to neuroectodermal patterning systems, so it is likely that the various architectures of the ventral nerve cords evolved convergently, many times.
Measurement of electrons from albedo neutron decay and neutron density in near-Earth space
Electrons derived from cosmic rays become trapped in the radiation belts that surround Earth, but how the electrons are generated has been uncertain; new measurements confirm the involvement of neutron decay.
Activation mechanism of the calcium-activated chloride channel TMEM16A revealed by cryo-EM
Cryo-electron microscopy mapping of the calcium-activated chloride channel TMEM16A combined with functional experiments reveals that calcium ions interact directly with the pore to activate the channel.
Fire frequency drives decadal changes in soil carbon and nitrogen and ecosystem productivity
A meta-analysis and field data show that frequent fires in savannas and broadleaf forests decrease soil carbon and nitrogen over many decades; modelling shows that nitrogen loss drives carbon loss by reducing net primary productivity.
Cryo-EM structures of the TMEM16A calcium-activated chloride channel
Electron cryo-microscopy density maps of mouse TMEM16A reconstituted in nanodiscs or solubilized in detergent reveal two functional states of calcium-activated chloride channels.
Effector CD8 T cells dedifferentiate into long-lived memory cells
DNA methylation profiling of virus-specific T cells during acute viral infection in mice provides evidence that a fate-permissive subset of effector CD8 T cells dedifferentiates into long-lived memory T cells.
Dynamics of phosphoinositide conversion in clathrin-mediated endocytic traffic
‘Coincidence-detecting’ phosphoinositide sensors are used to study changes in the phosphoinositide lipid species found in membranes during the development and maturation of endocytic clathrin-coated vesicles.
Evolution of a designed protein assembly encapsulating its own RNA genome
Computationally designed icosahedral protein-based assemblies can protect their genetic material and evolve in biochemical environments, suggesting a route to the custom design of synthetic nanomaterials for non-viral drug delivery.
Erratum: Large emissions from floodplain trees close the Amazon methane budget
Corrigendum: Mechanism of early dissemination and metastasis in Her2+ mammary cancer
Corrigendum: Reductions in global biodiversity loss predicted from conservation spending
Articles  
 
 
 
Enhancing mitochondrial proteostasis reduces amyloid-β proteotoxicity
Amyloid-β peptide proteopathies disrupt mitochondria, and restoring mitochondrial proteostasis reduces protein aggregation in animal models of amyloid-β disease.
Vincenzo Sorrentino, Mario Romani, Laurent Mouchiroud et al.
Alcohol-abuse drug disulfiram targets cancer via p97 segregase adaptor NPL4
Disulfiram is metabolized into copper–diethyldithiocarbamate, which binds to NPL4 and induces its aggregation in cells, leading to blockade of the p97–NPL4–UFD1 pathway and induction of a complex cellular phenotype that results in cell death.
Zdenek Skrott, Martin Mistrik, Klaus Kaae Andersen et al.
Electron cryo-microscopy structure of a human TRPM4 channel
The structure of the Ca2+-activated, non-selective ion channel TRPM4 bound to the agonist Ca2+ and a modulator decavanadate, solved using electron cryo-microscopy.
Paige A. Winkler, Yihe Huang, Weinan Sun et al.
Structures of the calcium-activated, non-selective cation channel TRPM4
Electron cryo-microscopy structures of mouse TRPM4, a calcium-activated, non-selective cation channel, in the apo and ATP-bound states.
Jiangtao Guo, Ji She, Weizhong Zeng et al.
Letters  
 
 
 
Magnetically gated accretion in an accreting ‘non-magnetic’ white dwarf
A weak magnetic field regulates magnetically gated accretion of gas from a companion star onto the white dwarf in the binary system MV Lyrae, previously labelled as a ‘non-magnetic’ system.
S. Scaringi, T. J. Maccarone, C. D’Angelo et al.
An electric-eel-inspired soft power source from stacked hydrogels
Miniature hydrogel compartments in scalable stacked and folded geometries were used to prepare a contact-activated artificial electric organ.
Thomas B. H. Schroeder, Anirvan Guha, Aaron Lamoureux et al.
Force loading explains spatial sensing of ligands by cells
The formation of cellular adhesion complexes is important in normal and pathological cell activity, and is determined by the force imposed by the combined effect of the distribution of extracellular matrix molecules and substrate rigidity.
Roger Oria, Tina Wiegand, Jorge Escribano et al.
Initiation and long-term instability of the East Antarctic Ice Sheet
Geophysical and geological data reveal increased ice-sheet variability and surface meltwater—possibly analogous to future conditions—offshore of the Aurora subglacial basin of East Antarctica during warm climate intervals of the past 50 million years.
Sean P. S. Gulick, Amelia E. Shevenell, Aleksandr Montelli et al.
Large emissions from floodplain trees close the Amazon methane budget
Methane fluxes from the stems of Amazonian floodplain trees indicate that the escape of soil gas through wetland trees is the dominant source of methane emissions in the Amazon basin.
Sunitha R. Pangala, Alex Enrich-Prast, Luana S. Basso et al.
A compositional tipping point governing the mobilization and eruption style of rhyolitic magma
Measurements of the composition-dependent viscosity of rhyolitic magma reveal a tipping point that changes the physical properties of the melt and controls the transition between effusive and explosive eruptions.
D. Di Genova, S. Kolzenburg, S. Wiesmaier et al.
Pluripotent state transitions coordinate morphogenesis in mouse and human embryos
Exit of epiblasts from an unrestricted naive pluripotent state is required for epithelialization and generation of the pro-amniotic cavity in mouse embryos and for amniotic cavity formation in human embryos and human embryonic stem cells.
Marta N. Shahbazi, Antonio Scialdone, Natalia Skorupska et al.
Moving beyond microbiome-wide associations to causal microbe identification
Triangulation of microbe–phenotype relationships is an effective method for reducing the noise inherent in microbiota studies and enabling identification of causal microbes of disease, which may be applicable to human microbiome studies.
Neeraj K. Surana, Dennis L. Kasper
Inhibition of soluble epoxide hydrolase prevents diabetic retinopathy
A product of the soluble epoxide hydrolase enzyme, 19,20-dihydroxydocosapentaenoic acid (19,20-DHDP), is implicated in the pathogenesis of diabetic retinopathy; levels of 19,20-DHDP increase in the retinas of mice and humans with diabetes, and inhibition of its production can rescue vascular abnormalities in a mouse model of the disease.
Jiong Hu, Sarah Dziumbla, Jihong Lin et al.
Runx3 programs CD8+ T cell residency in non-lymphoid tissues and tumours
The transcription factor Runx3 is identified as a central regulator of the development of tissue-resident memory CD8+ T cells, providing insights into the signals that promote T cell residency in non-lymphoid tissues and tumours.
J. Justin Milner, Clara Toma, Bingfei Yu et al.
A non-canonical Notch complex regulates adherens junctions and vascular barrier function
The transmembrane domain of NOTCH1 plays a key role in the assembly of adherens junctions and the non-transcriptional regulation of vascular permeability that links transcriptional programs with adhesive and cytoskeletal remodelling.
William J. Polacheck, Matthew L. Kutys, Jinling Yang et al.
RNA polymerase III limits longevity downstream of TORC1
RNA polymerase III is a key evolutionarily conserved regulator of longevity that may have potential as a therapeutic target for age-related conditions.
Danny Filer, Maximillian A. Thompson, Vakil Takhaveev et al.
piRNA-mediated regulation of transposon alternative splicing in the soma and germ line
A new mechanism of pre-mRNA splicing regulation is revealed that is mediated by piRNA pathway components and is dependent on heterochromatin histone modifications.
Felipe Karam Teixeira, Martyna Okuniewska, Colin D. Malone et al.
KAT2A coupled with the α-KGDH complex acts as a histone H3 succinyltransferase
The histone acetyl transferase KAT2A (also known as GCN5) can also catalyse histone succinylation, with the α-KGDH complex providing a local source of succinyl-CoA.
Yugang Wang, Yusong R. Guo, Ke Liu et al.
CORRIGENDUM  
 
 
 
Corrigendum: The 4D nucleome project
Job Dekker, Andrew S. Belmont, Mitchell Guttman et al.
Errata  
 
 
 
Erratum: Early members of ‘living fossil’ lineage imply later origin of modern ray-finned fishes
Sam Giles, Guang-Hui Xu, Thomas J. Near et al.
Erratum: Probabilistic reanalysis of twentieth-century sea-level rise
Carling C. Hay, Eric Morrow, Robert E. Kopp et al.
News and Views  
 
 
 
Early embryos kept in check
Julien G. Dumortier, Jean-Léon Maître
Stellar cannibalism in fits and starts
Thomas Marsh
A dark side to omega-3 fatty acids
Keisuke Yanagida, Timothy Hla
 

A detailed look at structural variation in the human genome 


Structural variant types, their contribution to disease & detection methods
.
Longer life through an odd Pol enzyme
Bruce A. Edgar, Savraj S. Grewal
 
Antarctic ice dynamics in warm climates
Sarah Greenwood
Viruses hijack a long non-coding RNA
Nicholas S. Heaton, Bryan R. Cullen
   
 
 
Careers & Jobs
 
Feature  
 
 
 
How museum work can combine research and public engagement
Amber Dance
Career Briefs  
 
 
 
Brexit fears continue to plague European scientists
Research funding for US universities up for first time in five years in 2016
Futures  
 
 
Fifteen minutes
Turn on, tune in, log off.
Alex Shvartsman
 
 
 
 
 

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