The ISME Journal - Table of Contents alert Volume 11 Issue 12

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TABLE OF CONTENTS Volume 11, Issue 12 (December 2017) In this issue Perspective Mini-Review Original Articles Short Communications Also new AOP   Sign up for e-alerts Recommend to your library Web feed Subscribe Advertisement Celebrating 10 years of The ISME Journal — 2007 to 2017 Thank you to the editors, board members, contributors, reviewers and readers, past and present for their invaluable contributions, and for bringing the journal to this milestone. Watch our anniversary video showing a brief impact overview >>>   Perspective Top Exact sequence variants should replace operational taxonomic units in marker-gene data analysis OPEN Benjamin J Callahan, Paul J McMurdie and Susan P Holmes ISME J 2017 11: 2639-2643; advance online publication, July 21, 2017; 10.1038/ismej.2017.119 Abstract | Full Text Mini-Review Top Network analysis of gut microbiota literature: an overview of the research landscape in non-human animal studies Emily L Pascoe, Heidi C Hauffe, Julian R Marchesi and Sarah E Perkins ISME J 2017 11: 2644-2651; advance online publication, August 11, 2017; 10.1038/ismej.2017.133 Abstract | Full Text Original Articles Top A genomic perspective on stoichiometric regulation of soil carbon cycling OPEN Wyatt H Hartman, Rongzhong Ye, William R Horwath and Susannah G Tringe ISME J 2017 11: 2652-2665; advance online publication, July 21, 2017; 10.1038/ismej.2017.115 Abstract | Full Text Role of plant–fungal nutrient trading and host control in determining the competitive success of ectomycorrhizal fungi Sara Hortal, Krista Lynn Plett, Jonathan Michael Plett, Tom Cresswell, Mathew Johansen, Elise Pendall and Ian Charles Anderson ISME J 2017 11: 2666-2676; advance online publication, July 21, 2017; 10.1038/ismej.2017.116 Abstract | Full Text Bacterial transcriptome remodeling during sequential co-culture with a marine dinoflagellate and diatom Marine Landa, Andrew S Burns, Selena J Roth and Mary Ann Moran ISME J 2017 11: 2677-2690; advance online publication, July 21, 2017; 10.1038/ismej.2017.117 Abstract | Full Text Drought and host selection influence bacterial community dynamics in the grass root microbiome OPEN Dan Naylor, Stephanie DeGraaf, Elizabeth Purdom and Devin Coleman-Derr ISME J 2017 11: 2691-2704; advance online publication, July 28, 2017; 10.1038/ismej.2017.118 Abstract | Full Text Nematode grazing promotes bacterial community dynamics in soil at the aggregate level OPEN Yuji Jiang, Manqiang Liu, Jiabao Zhang, Yan Chen, Xiaoyun Chen, Lijun Chen, Huixin Li, Xue-Xian Zhang and Bo Sun ISME J 2017 11: 2705-2717; advance online publication, July 25, 2017; 10.1038/ismej.2017.120 Abstract | Full Text Growth arrest and a persister state enable resistance to osmotic shock and facilitate dissemination of Vibrio cholerae Cecilia A Silva-Valenzuela, David W Lazinski, Shoshanna C Kahne, Y Nguyen, Roberto C Molina-Quiroz and Andrew Camilli ISME J 2017 11: 2718-2728; advance online publication, July 25, 2017; 10.1038/ismej.2017.121 Abstract | Full Text Changes in nutrient stoichiometry, elemental homeostasis and growth rate of aquatic litter-associated fungi in response to inorganic nutrient supply Vladislav Gulis, Kevin A Kuehn, Louie N Schoettle, Desiree Leach, Jonathan P Benstead and Amy D Rosemond ISME J 2017 11: 2729-2739; advance online publication, July 21, 2017; 10.1038/ismej.2017.123 Abstract | Full Text Ice nucleation active bacteria in precipitation are genetically diverse and nucleate ice by employing different mechanisms K C Failor, D G Schmale, III, B A Vinatzer and C L Monteil ISME J 2017 11: 2740-2753; advance online publication, July 28, 2017; 10.1038/ismej.2017.124 Abstract | Full Text Sulfide production and oxidation by heterotrophic bacteria under aerobic conditions OPEN Yongzhen Xia, Chuanjuan Lü, Ningke Hou, Yufeng Xin, Jihua Liu, Honglei Liu and Luying Xun ISME J 2017 11: 2754-2766; advance online publication, August 4, 2017; 10.1038/ismej.2017.125 Abstract | Full Text Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes Yi Yang, Steven A Higgins, Jun Yan, Burcu Şimşir, Karuna Chourey, Ramsunder Iyer, Robert L Hettich, Brett Baldwin, Dora M Ogles and Frank E Löffler ISME J 2017 11: 2767-2780; advance online publication, August 15, 2017; 10.1038/ismej.2017.127 Abstract | Full Text Phylogenetically conserved resource partitioning in the coastal microbial loop OPEN Samuel Bryson, Zhou Li, Francisco Chavez, Peter K Weber, Jennifer Pett-Ridge, Robert L Hettich, Chongle Pan, Xavier Mayali and Ryan S Mueller ISME J 2017 11: 2781-2792; advance online publication, August 11, 2017; 10.1038/ismej.2017.128 Abstract | Full Text Chemical dispersants enhance the activity of oil- and gas condensate-degrading marine bacteria Julien Tremblay, Etienne Yergeau, Nathalie Fortin, Susan Cobanli, Miria Elias, Thomas L King, Kenneth Lee and Charles W Greer ISME J 2017 11: 2793-2808; advance online publication, August 11, 2017; 10.1038/ismej.2017.129 Abstract | Full Text Bacterial volatile ammonia regulates the consumption sequence of d-pinitol and d-glucose in a fungus associated with an invasive bark beetle OPEN Fangyuan Zhou, Letian Xu, Shanshan Wang, Bo Wang, Qiaozhe Lou, Min Lu and Jianghua Sun ISME J 2017 11: 2809-2820; advance online publication, August 11, 2017; 10.1038/ismej.2017.131 Abstract | Full Text Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis OPEN Denis Warshan, Josh L Espinoza, Rhona K Stuart, R Alexander Richter, Sea-Yong Kim, Nicole Shapiro, Tanja Woyke, Nikos C Kyrpides, Kerrie Barry, Vasanth Singan, Erika Lindquist, Charles Ansong, Samuel O Purvine, Heather M Brewer, Philip D Weyman, Christopher L Dupont and Ulla Rasmussen ISME J 2017 11: 2821-2833; advance online publication, August 11, 2017; 10.1038/ismej.2017.134 Abstract | Full Text Unveiling bifidobacterial biogeography across the mammalian branch of the tree of life Christian Milani, Marta Mangifesta, Leonardo Mancabelli, Gabriele A Lugli, Kieran James, Sabrina Duranti, Francesca Turroni, Chiara Ferrario, Maria C Ossiprandi, Douwe van Sinderen and Marco Ventura ISME J 2017 11: 2834-2847; advance online publication, August 22, 2017; 10.1038/ismej.2017.138 Abstract | Full Text Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome OPEN Francesco Beghini, Edoardo Pasolli, Tin Duy Truong, Lorenza Putignani, Simone M Cacciò and Nicola Segata ISME J 2017 11: 2848-2863; advance online publication, August 22, 2017; 10.1038/ismej.2017.139 Abstract | Full Text Short Communications Top dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication Matthew R Olm, Christopher T Brown, Brandon Brooks and Jillian F Banfield ISME J 2017 11: 2864-2868; advance online publication, July 25, 2017; 10.1038/ismej.2017.126 Abstract | Full Text Phaeoviruses discovered in kelp (Laminariales) OPEN Dean A McKeown, Kim Stevens, Akira F Peters, Peter Bond, Glenn M Harper, Colin Brownlee, Murray T Brown and Declan C Schroeder ISME J 2017 11: 2869-2873; advance online publication, July 25, 2017; 10.1038/ismej.2017.130 Abstract | Full Text Microbial functional trait of rRNA operon copy numbers increases with organic levels in anaerobic digesters Linwei Wu, Yunfeng Yang, Si Chen, Zhou Jason Shi, Mengxin Zhao, Zhenwei Zhu, Sihang Yang, Yuanyuan Qu, Qiao Ma, Zhili He, Jizhong Zhou and Qiang He ISME J 2017 11: 2874-2878; advance online publication, August 25, 2017; 10.1038/ismej.2017.135 Abstract | Full Text Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. The contents of the Natureevents Directory are now live. The digital version is available here. Find the latest scientific conferences, courses, meetings and symposia on natureevents.com. For event advertising opportunities across the Nature Publishing Group portfolio please contact natureevents@nature.com More Nature Events Please note that you need to be a subscriber or site-licence holder to enjoy full-text access to The ISME Journal. In order to do so, please purchase a subscription. You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/nams/svc/myaccount (You will need to log in to be recognised as a nature.com registrant). For further technical assistance, please contact our registration department. For print subscription enquiries, please contact our subscription department. 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