Wednesday, January 18, 2017

Nature contents: 19 January 2017

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  journal cover  
Nature Volume 541 Issue 7637
 
This Week  
 
 
Editorials  
 
 
 
Trump’s vaccine-commission idea is biased and dangerous
Scientists must fight back with the truth about the debunked link between vaccines and autism.
Replication studies offer much more than technical details
They demonstrate the practice of science at its best.
Base the social cost of carbon on the science
The potential economic damage from global warming should not be influenced by politics.
 

It is critical for those using rodent models to understand how patents impact research and the consequences of infringement. In this short guide, learn more about: 
  • How patents affect the generation and use of genetically modified rodent models
  • What are licensing agreements and how do they apply to genetically modified rodent models
  • Meaning and implications of exclusive versus non-exclusive patent licenses
World View  
 
 
 
Give the public the tools to trust scientists
Anita Makri argues that the form of science communicated in popular media leaves the public vulnerable to false certainty.
 
Seven Days  
 
 
 
Marijuana's benefits, Antarctic ice cracks and a $500-million donation
The week in science: 13–19 January 2017.
Research Highlights  
 
 
 
Animal behaviour: Faecal odours act as rhino signals | Neuroscience: How to turn on killer instinct | Chemistry: Molecule gets knotted | Climate change: Sea-level rise for centuries to come | Ecology: Trees grow thick skin to survive fire | Palaeontology: Trilobites laid eggs | Evolution: How menopause emerged in whales | Conservation: Pristine forests are shrinking fast | Cancer biology: Tumours slowed by diet tweak
 
 
News in Focus
 
India’s first GM food crop held up by lawsuit
Scientists accused of deceiving the public about benefits of transgenic mustard.
Sanjay Kumar
  Cancer reproducibility project releases first results
An open-science effort to replicate dozens of cancer-biology studies is off to a confusing start.
Monya Baker, Elie Dolgin
Gates Foundation research can’t be published in top journals
Publications such as Nature and Science have policies that clash with the global health charity's open-access mandate.
Richard Van Noorden
  Space-weather forecast to improve with European satellite
Probe could give early warnings of catastrophic solar storms heading for Earth.
Elizabeth Gibney
US energy agency strengthens protections for scientists
Revised scientific-integrity policy gives researchers more leeway to speak to the press and publish their findings.
Erin Ross
  Croatia’s science minister rejects calls to resign amid plagiarism scandal
Pavo Barišić says he won't step down after a parliamentary ethics committee found he copied another scholar's work.
Mićo Tatalović, Nenad Jarić Dauenhauer
Features  
 
 
 
The $2.4-billion plan to steal a rock from Mars
NASA is now building the rover that it hopes will bring back signs of life on the red planet.
Alexandra Witze
Five big mysteries about CRISPR’s origins
Where did it come from? How do organisms use it without self-destructing? And what else can it do?
Heidi Ledford
Multimedia  
 
 
Nature Podcast: 19 January 2017
This week, communication between viruses, reproducing cancer studies, and explaining ‘fairy circles’.
Correction  
 
 
Correction
 
 
Nature Neuroscience presents this animation, which introduces the molecular, cellular and physiological mechanisms associated with Alzheimer's disease and highlights some of the most recent advances in our understanding of the onset and progression of this devastating neurological condition.
 
 
Comment
 
How to turn competitors into collaborators
Erica Ollmann Saphire and colleagues share lessons in finding treatments fast from the work on Ebola by the Viral Hemorrhagic Fever Immunotherapeutic Consortium.
Erica Ollmann Saphire, John M. Dye, Gary P. Kobinger et al.
Books and Arts  
 
 
 
Books in brief
Barbara Kiser reviews five of the week's best science picks.
Barbara Kiser
Technology: He wrote the future
On Arthur C. Clarke's centenary, Andrew Robinson lauds a prescient, original writer.
Andrew Robinson
Correspondence  
 
 
 
Brussels Declaration: Twenty-point plan for science policy
Michel Kazatchkine, Julian Kinderlerer, Aidan Gilligan
  Anthropocene: its stratigraphic basis
Jan Zalasiewicz, Colin Waters, Martin J. Head
Anthropocene: social science misconstrued
Noel Castree
  Censorship: Beware scientists wielding red pens
Bart Penders
Obituary  
 
 
 
John Glenn (1921–2016)
US astronaut and senator.
William A. 'Bill' Anders
 
 
Research
 
NEW ONLINE  
 
 
 
Cancer: Double trouble for tumours
When some cancer cells delete a tumour-suppressor gene, they also delete nearby genes. It emerges that one of these latter genes has a key metabolic role, revealing a therapeutic opportunity that might be relevant for many tumours.
Virology: Phages make a group decision
It emerges that phage viruses, which infect bacteria, use small peptides to communicate with each other. This observation of intercellular communication also reveals how viruses make a key developmental decision.
Materials science: Versatile gel assembly on a chip
Materials called hydrogels have potential applications as scaffolds for tissue engineering, but methods are needed to assemble them into complex structures that mimic those found in nature. Just such a method has now been reported.
IL-17 is a neuromodulator of Caenorhabditis elegans sensory responses
Interleukin-17 functions as a neuromodulator in the roundworm Caenorhabditis elegans, acting directly on RMG hub interneurons to alter their response properties and contribution to behaviour.
Structure of a eukaryotic cyclic-nucleotide-gated channel
The first high-resolution (3.5 Å) structure of a full-length cyclic-nucleotide-gated channel, revealing an unconventional, voltage-insensitive voltage-sensor domain and a unique coupling mechanism between cyclic-nucleotide-binding and pore-opening.
Neurotoxic reactive astrocytes are induced by activated microglia
A reactive astrocyte subtype termed A1 is induced after injury or disease of the central nervous system and subsequently promotes the death of neurons and oligodendrocytes.
Communication between viruses guides lysis–lysogeny decisions
Some phages—viruses that infect bacteria—encode peptides that are secreted from infected cells and that, beyond a certain threshold, stimulate other viruses to switch from the lytic (killing the host cell) to lysogenic (dormant) phase.
Compensatory water effects link yearly global land CO2 sink changes to temperature
A study of how temperature and water availability fluctuations affect the carbon balance of land ecosystems reveals different controls on local and global scales, implying that spatial climate covariation drives the global carbon cycle response.
Ultrafast nonthermal photo-magnetic recording in a transparent medium
Ultrafast photo-magnetic recording in transparent films of the dielectric cobalt-substituted garnet has very low heat load and is much faster than existing alternatives.
The ligand Sas and its receptor PTP10D drive tumour-suppressive cell competition
Wild-type Drosophila epithelial cells outcompete proto-oncogenic cells through translocation of the ligand Sas to the wild-type–tumour cell interface, where it binds the PTP10D receptor of the tumour cell, initiating pro-apoptotic signalling.
Genomic deletion of malic enzyme 2 confers collateral lethality in pancreatic cancer
Depletion of malic enzyme 3 in pancreatic cancer cells that have a deletion of the gene for malic enzyme 2 selectively kills the cells, suggesting that the enzyme might represent a therapeutic target for this subset of cancers.
Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus OPEN
The genome of the Southern Ocean phytoplankton Fragilariopsis cylindrus differs markedly from the genomes of its more temperate relatives, with divergent alleles being differentially expressed in environmentally specific conditions such as freezing and darkness.
Corrigendum: Structural basis of N6-adenosine methylation by the METTL3–METTL14 complex
News and Views  
 
 
 
Virology: Ins and outs of picornaviruses
Kevin L. McKnight, Stanley M. Lemon
Quantum optics: Quiet moments in time
Marco Bellini
Human behaviour: Shoppers like what they know
Peter M. Todd
 
Focus on the neuroscience toolbox

Nature Neuroscience presents a special focus issue on the neuroscience toolbox highlighting recent technological advances, approaches and collaborative initiatives that are enabling new avenues of research.

Access the Focus free online for six months

Produced with support from:
The Kavli Foundation 
Molecular biology: Messenger RNAs marked for longer life
David E. Weinberg, John D. Gross
 
Reconfigurable materials: Algorithm for architectural origami
Jamie Paik
Microbiology: Mind the gaps in cellular evolution
James O. McInerney, Mary J. O'Connell
 
50 & 100 Years Ago
Insight  
 
 
 
Frontiers in biology
Orli Bahcall, Angela K. Eggleston, Nathalie Le Bot et al.
Tracing the peopling of the world through genomics
Rasmus Nielsen, Joshua M. Akey, Mattias Jakobsson et al.
From morphogen to morphogenesis and back
Darren Gilmour, Martina Rembold, Maria Leptin
Elements of cancer immunity and the cancer–immune set point
Daniel S. Chen, Ira Mellman
Scaling single-cell genomics from phenomenology to mechanism
Amos Tanay, Aviv Regev
Chemical and structural effects of base modifications in messenger RNA
Emily M. Harcourt, Anna M. Kietrys, Eric T. Kool
Articles  
 
 
 
Asgard archaea illuminate the origin of eukaryotic cellular complexity
This work describes the Asgard superphylum, an assemblage of diverse archaea that comprises Odinarchaeota, Heimdallarchaeota, Lokiarchaeota and Thorarchaeota, offering insights into the earliest days of eukaryotic cells and their complex features.
Katarzyna Zaremba-Niedzwiedzka, Eva F. Caceres, Jimmy H. Saw et al.
Rational design of reconfigurable prismatic architected materials
A robust and scale-independent strategy for the design of reconfigurable architected materials (in which properties are adjusted by altering structure rather than composition) is described, based on space-filling assemblies of polyhedra.
Johannes T. B. Overvelde, James C. Weaver, Chuck Hoberman et al.
Genomic hallmarks of localized, non-indolent prostate cancer
Genomic analyses of localized, non-indolent prostate cancer identify recurrent aberrations that can predict relapse, and also highlight differences between early prostate cancer and metastatic, castration-resistant disease.
Michael Fraser, Veronica Y. Sabelnykova, Takafumi N. Yamaguchi et al.
Reversible methylation of m6Am in the 5′ cap controls mRNA stability
Fat mass and obesity-associated protein (FTO) preferentially demethylates m6Am, a modified adenosine that, when present at the 5′ end of certain mRNAs, positively influences mRNA stability by preventing DCP2-mediated decapping.
Jan Mauer, Xiaobing Luo, Alexandre Blanjoie et al.
Integration of temporal and spatial patterning generates neural diversity
Combinatorial inputs from temporal and spatial axes act together to promote medullary neural diversity in the optic lobes of Drosophila.
Ted Erclik, Xin Li, Maximilien Courgeon et al.
Letters  
 
 
 
Hurricane intensification along United States coast suppressed during active hurricane periods
In general, if there are fewer Atlantic hurricanes, those near the US coast are more likely to intensify, whereas if there are many hurricanes, then those near the coast are more likely to weaken because of high local wind shear and low sea surface temperatures.
James P. Kossin
Structural basis for nutrient acquisition by dominant members of the human gut microbiota
The authors present structures of nutrient transport complexes of the commensal bacterium Bacteroides thetaiotaomicron and the mechanism by which it imports glycans.
Amy J. Glenwright, Karunakar R. Pothula, Satya P. Bhamidimarri et al.
Genetic variants regulating expression levels and isoform diversity during embryogenesis
The effects of genetic variation on transcriptional and post-transcriptional regulation are systematically mapped across multiple stages of embryogenesis in eighty inbred Drosophila lines, identifying thousands of quantitative trait loci affecting approximately 17% of expressed genes, often with heteroalleic interactions.
Enrico Cannavò, Nils Koelling, Dermot Harnett et al.
The role of interfacial lipids in stabilizing membrane protein oligomers
Membrane lipids such as cardiolipin act as molecular glue to preserve the oligomeric states of membrane proteins with low oligomeric stability.
Kallol Gupta, Joseph A. C. Donlan, Jonathan T. S. Hopper et al.
Hyoliths are Palaeozoic lophophorates
Analysis of exceptionally preserved fossils of the Cambrian hyolith Haplophrentis leads to a proposed evolutionary relationship with Lophophorata, the group containing brachiopods and phoronids, on the basis of a newly described tentacular feeding apparatus.
Joseph Moysiuk, Martin R. Smith, Jean-Bernard Caron
PLA2G16 represents a switch between entry and clearance of Picornaviridae
The phospholipase PLA2G16 is required for the entry of picornaviruses, and in its absence, virus infection is prevented by a galectin-8-mediated process.
Jacqueline Staring, Eleonore von Castelmur, Vincent A. Blomen et al.
Subcycle quantum electrodynamics
Few-femtosecond laser pulses are used to generate squeezed mid-infrared light transients and to detect distorted quantum fluctuations of the electric field directly in the time domain.
C. Riek, P. Sulzer, M. Seeger et al.
Kinetically E-selective macrocyclic ring-closing metathesis
Ring-closing metathesis is a widely used chemical transformation that can generate organic macrocycle compounds; here, an approach is described by which the E-stereoisomer of a macrocycle is generated selectively, exemplified by synthesizing the antibiotic recifeolide and the anti-cancer drug pacritinib.
Xiao Shen, Thach T. Nguyen, Ming Joo Koh et al.
Evolution of the global phosphorus cycle
Low phosphorus burial in shallow marine sedimentary rocks before about 750 million years ago implies a change in the global phosphorus cycle, coinciding with the end of what may have been a stable low-oxygen world.
Christopher T. Reinhard, Noah J. Planavsky, Benjamin C. Gill et al.
A theoretical foundation for multi-scale regular vegetation patterns
Empirically validated mathematical models show that a combination of intraspecific competition between subterranean social-insect colonies and scale-dependent feedbacks between plants can explain the spatially periodic vegetation patterns observed in many landscapes, such as the Namib Desert ‘fairy circles’.
Corina E. Tarnita, Juan A. Bonachela, Efrat Sheffer et al.
Microenvironmental autophagy promotes tumour growth
During early-stage tumour growth in Drosphila, tumour cells acquire necessary nutrients by triggering autophagy in surrounding cells in the tumour microenvironment.
Nadja S. Katheder, Rojyar Khezri, Fergal O’Farrell et al.
 
 
Advertising.
 
 
Careers & Jobs
 
Feature  
 
 
 
Communication: Post-truth predicaments
Virginia Gewin
Q&AS  
 
 
 
Turning point: Advocacy ambassador
Virginia Gewin
Futures  
 
 
Cease and desist
Our word is your bond.
Tyler Young
 
 
 
 
 

naturejobs.com

naturejobs.com Science jobs of the week

 
 
 

Helmholtz Young Investigator Group Leader

 
 

Helmholtz Association 

 
 
 
 
 

Research Scientist

 
 

The George Washington University 

 
 
 
 
 

Postdoctoral Fellow

 
 

University of Texas Health Science Center at San Antonio 

 
 
 
 
 

Post-Doctoral Research Associate (Data Scientist)

 
 

The University of Manchester 

 
 
 
 

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natureevents directory featured events

 
 
 
 

2017 StratCan Interactive Summer School on Cancer Genomics

 
 

13.06.17 Stockholm, Sweden

 
 
 
 

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