Wednesday, December 14, 2016

Nature contents: 15 December 2016

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  journal cover  
Nature Volume 540 Issue 7633
 
This Week  
 
 
Editorials  
 
 
 
Corporate culture spreads to Scandinavian institutes
The trend of turning universities into businesses is limiting research freedoms in traditionally liberal institutes in northern Europe. It is time for scientists to regain lost ground.
Donald Trump's choice for head of the US environment agency is dismaying
Scott Pruitt has consistently opposed attempts to reduce pollution.
Sequence reveals genes behind bizarre sea-horse traits
A Nature paper explores this unusual creature from the inside out.
 
 
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Latest highlight: Three-dimensional graphene: Sponge-like nanomaterials soak up electrons
In the spotlight: A new center of excellence in nanotechnology in China
 
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World View  
 
 
 
Simply studying populism is no longer enough
Sociologist Matthijs Rooduijn explains why the darkening political mood must force academics to step up and choose sides.
 
Seven Days  
 
 
 
Trump nominations, Brexit impact and space icon dies
The week in science: 9–15 December 2016.
Research Highlights  
 
 
 
Energy: Solar power pays off | Neuroscience: Transplanted brain cells calm fear | Astrophysics: Dark matter may not be so clumpy | Biomaterials: How additives preserve vaccines | Materials: Graphene putty feels the beat | Animal Behaviour: Ants 'talk' by swapping spit | Astronomy: Gaia charts one billion stars | Synthetic Biology: Designer cells treat diabetic mice | Primatology: Macaques vocally equipped to speak | Ecology: Extinctions on the warm front
 
 

The npj Biofilms and Microbiomes Community provides an online space for members to share and discuss research, ideas and opinions on both microbial biofilms and microbiomes. A companion site to the journal, the Community allows members to learn more from journal authors, connect with their peers, find out about upcoming events and conferences and collaborate together to advance science.
 
 
 
News in Focus
 
Tech giants open virtual worlds to bevy of AI programs
Artificial-intelligence algorithms can learn a lot from playing immersive 3D video games.
Davide Castelvecchi
  Italian scientists won't miss departing Prime Minister Matteo Renzi
Italy's youngest leader failed to walk the talk when it came to boosting research, academics say.
Alison Abbott
Controversial impact factor gets a heavyweight rival
Elsevier's CiteScore uses a larger database — and provides different results for the quality of journals.
Richard Van Noorden
  CRISPR heavyweights battle in US patent court
The University of California, Berkeley, and the Broad Institute are vying for lucrative rights to the gene-editing system.
Sara Reardon
Does it matter if Donald Trump has a science adviser?
His plans for the job are a mystery, but past presidents have used their chief scientific aide in a number of ways.
Alexandra Witze
  Algorithms compete to predict recipe for cancer vaccine
How to rouse the immune system against tumours has proved elusive.
Heidi Ledford
Features  
 
 
 
Three minutes with Hans Rosling will change your mind about the world
He has influenced leaders from Melinda Gates to Fidel Castro. Now, he is on a mission to save the people from their preconceived ideas.
Amy Maxmen
Multimedia  
 
 
Nature Podcast: 15 December 2016
This week, a spray that boosts plant growth and resilience, 3-million-year old hominin footprints, and the seahorse genome.
 
 
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Comment
 
Make better, safer biomaterials
Design and test new polymers with clinical uses in mind, urge Nicholas A. Peppas and Ali Khademhosseini.
Nicholas A. Peppas, Ali Khademhosseini
Books and Arts  
 
 
 
Medical research: Mariners' malady
Tilli Tansey on how the ruinous trajectory of scurvy marked the age of discovery.
Tilli Tansey
Sustainability: Earth, the long view
Emma Marris relishes a joyous vision of planetary stewardship over the long haul.
Emma Marris
Digital education: Pedagogy online
Mike Sharples weighs up a study on the great migration to digital education, from 'flipped' teaching to MOOCs.
Mike Sharples
Correspondence  
 
 
 
Italy: Stop government picking professors
Luigi Nicolais
  Trump: renewables for self-sufficiency
Seth B. C. Shonkoff
Trump: time to seize environmental gains
Duan Biggs
  Ethnicity: Diversity is future for genetic analysis
Christopher S. Carlson
Marine reserves: Sustainable fisheries need reserves
Mark John Costello
 
Obituary  
 
 
 
Ralph J. Cicerone (1943–2016)
Atmospheric scientist who defended the environment.
Mario Molina, Kenneth Janda
 
 
Research
 
NEW ONLINE  
 
 
 
Systems biology: Molecular memoirs of a cellular family
A system that introduces random modifications to barcode sequences embedded in cells' DNA allows lineage relationships between cells to be discerned, while preserving the cells' spatial relationships.
Biomaterials: Sharks shift their spine into high gear
It emerges that a dogfish shark's spine becomes stiffer as the fish swims faster, enabling the animal to swim efficiently at different speeds. The finding could also provide inspiration for the design of robotic biomaterials.
Structural biology: Ion-channel mechanisms revealed
Structures of Slo1, a channel that conducts potassium ions out of cells, provide insight into the basis of its high conductance, and of its dual activation by calcium ions and increased membrane voltage.
Metastasis: Pathways of parallel progression
Two studies in mice identify mechanisms by which tumour cells disseminate in very early breast cancer. Both show that these cells colonize distant tissues more efficiently than their later counterparts.
Stem cells: Valine starvation leads to a hungry niche
The haematopoietic stem cells that rejuvenate blood depend on a dietary source of the amino acid valine — a finding that has been exploited to reduce the toxicity of bone-marrow transplantation in mice.
Cryo-EM structure of the open high-conductance Ca2+-activated K+ channel
Two complementary studies present the full-length high-resolution structure of a Slo1 channel in the presence or absence of Ca2+ ions, in which an unconventional allosteric voltage-sensing mechanism regulates the Ca2+ sensor in addition to the voltage sensor's direct action on the pore.
Structural basis for gating the high-conductance Ca2+-activated K+ channel
Two complementary studies present the full-length high-resolution structure of a Slo1 channel in the presence or absence of Ca2+ ions, in which an unconventional allosteric voltage-sensing mechanism regulates the Ca2+ sensor in addition to the voltage sensor's direct action on the pore.
Early dissemination seeds metastasis in breast cancer
Two related papers show that cells disseminated from malignant lesions at early time points during tumorigenesis can contribute to metastases at distant organs and provide insights into the molecular basis of dissemination.
mRNA quality control is bypassed for immediate export of stress-responsive transcripts
Heat shock drives the expression of transcripts that bypass mRNA quality control for direct export and translation, allowing cells to survive extreme situations at the cost of accuracy.
Near-atomic-resolution cryo-EM analysis of the Salmonella T3S injectisome basal body
The authors report the structure of the assembled membrane spanning ring forming proteins of the Salmonella Typhimurium injectisome basal body, including the first atomic structure of a member of the secretin family of outer-membrane pores.
Centennial-scale Holocene climate variations amplified by Antarctic Ice Sheet discharge
Records of iceberg-rafted debris and climate model simulations reveal that fluctuations in Antarctic Ice Sheet discharge may have amplified climate fluctuations during the Holocene.
Chemical intervention in plant sugar signalling increases yield and resilience
Treatment with signalling precursors of trehalose-6-phosphate allows light-triggered release of trehalose-6-phosphate in Arabidopsis thaliana and increases the yield and drought resistance of spring wheat (Triticum aestivum).
NLRC3 is an inhibitory sensor of PI3K–mTOR pathways in cancer
Mice deficient in the protein NLRC3 are highly prone to colitis and tumour development in the colon as NLRC3 suppresses the activation of mTOR signalling pathways that help drive tumorigenesis.
Correlated fluorescence blinking in two-dimensional semiconductor heterostructures
A correlated blinking phenomenon is discovered in two-dimensional bilayer semiconductor heterostructures, whereby a bright emission state occurs in one monolayer while a dark state occurs in the other, and vice versa.
Mechanism of early dissemination and metastasis in Her2+ mammary cancer
Two related papers show that cells disseminated from malignant lesions at early time points during tumorigenesis can contribute to metastases at distant organs and provide insights into the molecular basis of dissemination.
Corrigendum: PI3Kγ is a molecular switch that controls immune suppression
Brief Communications Arising  
 
 
 
Lifespan effects of mitochondrial mutations
Misa Hirose, Paul Schilf, Yask Gupta et al.
News and Views  
 
 
 
Pharmacology: Inside-out receptor inhibition
Thomas P. Sakmar, Thomas Huber
Chemical biology: A radical change in enzyme catalysis
Uwe T. Bornscheuer
Hydrology: The dynamics of Earth's surface water
Dai Yamazaki, Mark A. Trigg
 
Nature Outlook: Lysosomal Storage Disorders

Lysosomal storage disorders are individually rare but collectively common. The study of these diseases is not only leading to better treatments, but also revealing many of the secrets of this underappreciated organelle. 

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Stem cells: Cause and consequence in aged-muscle decline
Susan Eliazer, Andrew S. Brack
 
Cancer: A gene-expression profile for leukaemia
Gerrit J. Schuurhuis
Biomedicine: An eye on retinal recovery
Michael A. Dyer
 
Insight  
 
 
 
Polymers
Ros Daw, Claire Hansell, Magdalena Helmer
Sustainable polymers from renewable resources
Yunqing Zhu, Charles Romain, Charlotte K. Williams
Polymers with autonomous life-cycle control
Jason F. Patrick, Maxwell J. Robb, Nancy R. Sottos et al.
Printing soft matter in three dimensions
Ryan L. Truby, Jennifer A. Lewis
The rise of plastic bioelectronics
Takao Someya, Zhenan Bao, George G. Malliaras
Mimicking biological functionality with polymers for biomedical applications
Jordan J. Green, Jennifer H. Elisseeff
Articles  
 
 
 
The seahorse genome and the evolution of its specialized morphology OPEN
Here, the genome sequence of the tiger tail seahorse is reported and comparative genomic analyses with other ray-finned fishes are used to explore the genetic basis of the unique morphology and reproductive system of the seahorse.
Qiang Lin, Shaohua Fan, Yanhong Zhang et al.
Electric-field-stimulated protein mechanics
A new method in which strong electric fields are applied to a protein crystal while collecting time-resolved X-ray diffraction patterns is able to follow the mechanical motions of all the constituent atoms, with implications for molecular biology and drug discovery.
Doeke R. Hekstra, K. Ian White, Michael A. Socolich et al.
Letters  
 
 
 
Epigenetic stress responses induce muscle stem-cell ageing by Hoxa9 developmental signals
Changes in active chromatin marks in old activated satellite cells lead to Hoxa9 activation, which induces the expression of developmental pathway genes with a known inhibitory effect on satellite cell function and muscle regeneration in aged mice.
Simon Schwörer, Friedrich Becker, Christian Feller et al.
Structure of CC chemokine receptor 2 with orthosteric and allosteric antagonists
The crystal structure of CCR2 chemokine receptor in a complex with two different antagonists—one orthosteric the other allosteric—which functionally cooperate to inhibit CCR2.
Yi Zheng, Ling Qin, Natalia V. Ortiz Zacarías et al.
High-resolution mapping of global surface water and its long-term changes
A freely available dataset produced from three million Landsat satellite images reveals substantial changes in the distribution of global surface water over the past 32 years and their causes, from climate change to human actions.
Jean-François Pekel, Andrew Cottam, Noel Gorelick et al.
Resolved images of a protostellar outflow driven by an extended disk wind
Observations of the outflow associated with the TMC1A protostellar system reveal that the 'disk wind' model correctly explains how material is ejected from protostars.
Per Bjerkeli, Matthijs H. D. van der Wiel, Daniel Harsono et al.
Extensive degeneracy, Coulomb phase and magnetic monopoles in artificial square ice
All of the characteristics of the square-ice model are observed in an artificial square-ice system in which the two sublattices of nanomagnets are slightly vertically separated.
Yann Perrin, Benjamin Canals, Nicolas Rougemaille
Neutralizing human antibodies prevent Zika virus replication and fetal disease in mice
Monoclonal Zika-virus-neutralizing human antibodies can protect against maternal–fetal transmission, infection and disease.
Gopal Sapparapu, Estefania Fernandez, Nurgun Kose et al.
Receptor usage dictates HIV-1 restriction by human TRIM5α in dendritic cell subsets
Human TRIM5α restricts HIV-1 infection of Langerhans cells through a Langerin-dependent autophagy pathway.
Carla M. S. Ribeiro, Ramin Sarrami-Forooshani, Laurentia C. Setiawan et al.
Intracellular allosteric antagonism of the CCR9 receptor
The crystal structure of the CCR9 chemokine receptor in complex with vercirnon at 2.8 Å resolution.
Christine Oswald, Mathieu Rappas, James Kean et al.
A 17-gene stemness score for rapid determination of risk in acute leukaemia
A rapid gene signature test (LSC17) that captures stem cell expression programs in acute myeloid leukaemia patients at diagnosis is associated with therapy response and survival, facilitating initial treatment stratification.
Stanley W. K. Ng, Amanda Mitchell, James A. Kennedy et al.
Accessing non-natural reactivity by irradiating nicotinamide-dependent enzymes with light
Photoexcitation of a catalytic enzyme's co-factor is shown to change the reactivity of the enzyme, enabling it to carry out a non-natural enantioselective dehalogenation of lactone molecules.
Megan A. Emmanuel, Norman R. Greenberg, Daniel G. Oblinsky et al.
Structure and regulation of the chromatin remodeller ISWI
The crystal structures of ISWI, the catalytic subunit of several chromatin remodelling complexes, and its complex with a histone H4 peptide are reported.
Lijuan Yan, Li Wang, Yuanyuan Tian et al.
Structure of photosystem II and substrate binding at room temperature
The structures of three intermediate states of photosystem II, which is crucial for photosynthesis, have been solved at room temperature, shedding new light on this process.
Iris D. Young, Mohamed Ibrahim, Ruchira Chatterjee et al.
Genome-wide changes in lncRNA, splicing, and regional gene expression patterns in autism
Gene expression analysis in brain tissue from individuals with and without autism spectrum disorder (ASD) suggests that the transcription factor SOX5 contributes to an ASD-associated reduction in transcriptional differences between brain areas and indicates that common transcriptomic changes occur in different forms of ASD.
Neelroop N. Parikshak, Vivek Swarup, T. Grant Belgard et al.
Zika virus infection damages the testes in mice
Infection of male mice with Zika virus caused testicular and epididymal damage, reduction in sex hormone levels, destruction of germ and somatic cells in the testis, loss of mature sperm and reduction in fertility.
Jennifer Govero, Prabagaran Esakky, Suzanne M. Scheaffer et al.
CORRIGENDUM  
 
 
 
Corrigendum: Synergistic, ultrafast mass storage and removal in artificial mixed conductors
Chia-Chin Chen, Lijun Fu, Joachim Maier
Addenda  
 
 
 
Addendum: REST and stress resistance in ageing and Alzheimer's disease
Lu T., Liviu Aron, Joseph Zullo et al.
Errata  
 
 
 
Erratum: Kamakura replies
M. Kamakura
Erratum: Follicular CXCR5-expressing CD8+ T cells curtail chronic viral infection
Ran He, Shiyue Hou, Cheng Liu et al.
 
 
 
ENVIRONMENTAL MICROBIAL BIOFILMS AND HUMAN MICROBIOMES: DRIVERS OF FUTURE SUSTAINABILITY

February 12-15, 2017 | Nanyang Executive Centre, Singapore

Presented by: Nanyang Technological University (NTU) | Singapore Centre for Environmental Life Sciences Engineering (SCELSE) | npj Biofilms and Microbiomes

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Careers & Jobs
 
Feature  
 
 
 
Funding: Word perfect
Amber Dance
Q&AS  
 
 
 
Turning point: Climate guardian
Virginia Gewin
Futures  
 
 
Reflections on a life story
A fresh start.
M. Darusha Wehm
 
 
 
 
 

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