The ISME Journal - Table of Contents alert Volume 10 Issue 12

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TABLE OF CONTENTS Volume 10, Issue 12 (December 2016) In this issue Perspectives Original Articles Short Communications Also new AOP Sign up for e-alerts Recommend to your library Web feed Subscribe Perspectives Top A conceptual framework for invasion in microbial communities Marta Kinnunen, Arnaud Dechesne, Caitlin Proctor, Frederik Hammes, David Johnson, Marcos Quintela-Baluja, David Graham, Daniele Daffonchio, Stilianos Fodelianakis, Nicole Hahn, Nico Boon and Barth F Smets ISME J 2016 10: 2773-2775; advance online publication, May 3, 2016; 10.1038/ismej.2016.75 Abstract | Full Text Aligning molecular studies of mycorrhizal fungal diversity with ecologically important levels of diversity in ecosystems OPEN Ian R Sanders and Alia Rodriguez ISME J 2016 10: 2780-2786; advance online publication, April 29, 2016; 10.1038/ismej.2016.73 Abstract | Full Text Original Articles Top Cold adaptation regulated by cryptic prophage excision in Shewanella oneidensis OPEN Zhenshun Zeng, Xiaoxiao Liu, Jianyun Yao, Yunxue Guo, Baiyuan Li, Yangmei Li, Nianzhi Jiao and Xiaoxue Wang ISME J 2016 10: 2787-2800; advance online publication, August 2, 2016; 10.1038/ismej.2016.85 Abstract | Full Text Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum OPEN Stefan Spring, Boyke Bunk, Cathrin Spröer, Peter Schumann, Manfred Rohde, Brian J Tindall and Hans-Peter Klenk ISME J 2016 10: 2801-2816; advance online publication, June 14, 2016; 10.1038/ismej.2016.84 Abstract | Full Text Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants Tali Raveh-Sadka, Brian Firek, Itai Sharon, Robyn Baker, Christopher T Brown, Brian C Thomas, Michael J Morowitz and Jillian F Banfield ISME J 2016 10: 2817-2830; advance online publication, June 3, 2016; 10.1038/ismej.2016.83 Abstract | Full Text Torn apart and reunited: impact of a heterotroph on the transcriptome of Prochlorococcus Steven J Biller, Allison Coe and Sallie W Chisholm ISME J 2016 10: 2831-2843; advance online publication, June 3, 2016; 10.1038/ismej.2016.82 Abstract | Full Text A stable genetic polymorphism underpinning microbial syntrophy OPEN Tobias Großkopf, Simone Zenobi, Mark Alston, Leighton Folkes, David Swarbreck and Orkun S Soyer ISME J 2016 10: 2844-2853; advance online publication, June 3, 2016; 10.1038/ismej.2016.80 Abstract | Full Text Prophages mediate defense against phage infection through diverse mechanisms Joseph Bondy-Denomy, Jason Qian, Edze R Westra, Angus Buckling, David S Guttman, Alan R Davidson and Karen L Maxwell ISME J 2016 10: 2854-2866; advance online publication, June 3, 2016; 10.1038/ismej.2016.79 Abstract | Full Text Evaluating community–environment relationships along fine to broad taxonomic resolutions reveals evolutionary forces underlying community assembly Hsiao-Pei Lu, Yi-Chun Yeh, Akash R Sastri, Fuh-Kwo Shiah, Gwo-Ching Gong and Chih-hao Hsieh ISME J 2016 10: 2867-2878; advance online publication, May 13, 2016; 10.1038/ismej.2016.78 Abstract | Full Text Biogeography of sulfur-oxidizing Acidithiobacillus populations in extremely acidic cave biofilms OPEN Daniel S Jones, Irene Schaperdoth and Jennifer L Macalady ISME J 2016 10: 2879-2891; advance online publication, May 17, 2016; 10.1038/ismej.2016.74 Abstract | Full Text Transcriptional response of Prochlorococcus to co-culture with a marine Alteromonas: differences between strains and the involvement of putative infochemicals Dikla Aharonovich and Daniel Sher ISME J 2016 10: 2892-2906; advance online publication, April 29, 2016; 10.1038/ismej.2016.70 Abstract | Full Text A genomic comparison of 13 symbiotic Vibrio fischeri isolates from the perspective of their host source and colonization behavior Clotilde Bongrand, Eric J Koch, Silvia Moriano-Gutierrez, Otto X Cordero, Margaret McFall-Ngai, Martin F Polz and Edward G Ruby ISME J 2016 10: 2907-2917; advance online publication, April 29, 2016; 10.1038/ismej.2016.69 Abstract | Full Text Dynamics of microbial community composition and soil organic carbon mineralization in soil following addition of pyrogenic and fresh organic matter Thea Whitman, Charles Pepe-Ranney, Akio Enders, Chantal Koechli, Ashley Campbell, Daniel H Buckley and Johannes Lehmann ISME J 2016 10: 2918-2930; advance online publication, April 29, 2016; 10.1038/ismej.2016.68 Abstract | Full Text Ancestral genome reconstruction identifies the evolutionary basis for trait acquisition in polyphosphate accumulating bacteria OPEN Ben O Oyserman, Francisco Moya, Christopher E Lawson, Antonio L Garcia, Mark Vogt, Mitchell Heffernen, Daniel R Noguera and Katherine D McMahon ISME J 2016 10: 2931-2945; advance online publication, April 29, 2016; 10.1038/ismej.2016.67 Abstract | Full Text Global genetic capacity for mixotrophy in marine picocyanobacteria Alexis P Yelton, Silvia G Acinas, Shinichi Sunagawa, Peer Bork, Carlos Pedrós-Alió and Sallie W Chisholm ISME J 2016 10: 2946-2957; advance online publication, May 3, 2016; 10.1038/ismej.2016.64 Abstract | Full Text Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants OPEN Sheerli Kruger Ben Shabat, Goor Sasson, Adi Doron-Faigenboim, Thomer Durman, Shamay Yaacoby, Margret E Berg Miller, Bryan A White, Naama Shterzer and Itzhak Mizrahi ISME J 2016 10: 2958-2972; advance online publication, May 6, 2016; 10.1038/ismej.2016.62 Abstract | Full Text Short Communications Top Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits Yuliaxis Ramayo-Caldas, Nuria Mach, Patricia Lepage, Florence Levenez, Catherine Denis, Gaetan Lemonnier, Jean-Jacques Leplat, Yvon Billon, Mustapha Berri, Jöel Doré, Claire Rogel-Gaillard and Jordi Estellé ISME J 2016 10: 2973-2977; advance online publication, May 13, 2016; 10.1038/ismej.2016.77 Abstract | Full Text The fermentation product 2,3-butanediol alters P. aeruginosa clearance, cytokine response and the lung microbiome Mytien Nguyen, Anurag Sharma, Wenzhu Wu, Rika Gomi, Biin Sung, Denina Hospodsky, Largus T Angenent and Stefan Worgall ISME J 2016 10: 2978-2983; advance online publication, May 14, 2016; 10.1038/ismej.2016.76 Abstract | Full Text Light-dependent microbial metabolisms drive carbon fluxes on glacier surfaces Andrea Franzetti, Ilario Tagliaferri, Isabella Gandolfi, Giuseppina Bestetti, Umberto Minora, Christoph Mayer, Roberto S Azzoni, Guglielmina Diolaiuti, Claudio Smiraglia and Roberto Ambrosini ISME J 2016 10: 2984-2988; advance online publication, April 29, 2016; 10.1038/ismej.2016.72 Abstract | Full Text Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. The contents of the Natureevents Directory are now live. The digital version is available here. Find the latest scientific conferences, courses, meetings and symposia on natureevents.com. For event advertising opportunities across the Nature Publishing Group portfolio please contact natureevents@nature.com More Nature Events Please note that you need to be a subscriber or site-licence holder to enjoy full-text access to The ISME Journal. In order to do so, please purchase a subscription. You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/nams/svc/myaccount (You will need to log in to be recognised as a nature.com registrant). For further technical assistance, please contact our registration department. For print subscription enquiries, please contact our subscription department. 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