Wednesday, November 23, 2016

Nature contents: 24 November 2016

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  journal cover  
Nature Volume 539 Issue 7630
 
This Week  
 
 
Editorials  
 
 
 
US Cancer Moonshot must strike a balance between research and prevention
In the face of uncertain funding, the US initiative should not ignore proven programmes in favour of glitzy research.
The power of big data must be harnessed for medical progress
But grave challenges remain before the promise of individually tailored medicine becomes reality.
Middle East X-ray factory is a source of hope
The SESAME synchrotron shows a way towards greater trust and cooperation in the Middle East.
 
 
AIMResearch - Highlighting research from the Advanced Institute for Materials Research (AIMR) in Japan, which promotes mathematics-materials science collaboration
Latest highlight: Carbon nanostructures: In the loop
In the spotlight: A mathematician, an experimentalist and their interpreter
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World View  
 
 
 
Stand firm on hormone disruptors
Ahead of a key meeting on endocrine-disrupting chemicals, Leonardo Trasande argues that policy must follow the science.
 
Seven Days  
 
 
 
Malaria vaccine, peatland protection and a string of satellites
The week in science: 18–24 November 2016.
Research Highlights  
 
 
 
Population genetics: Clues to shy sharks in seawater DNA | Astrophysics: Homing in on a fast radio burst | Plant biology: Rapid recovery boosts plant yields | Biochemistry: Catalyst clicks drugs together | Biochemistry: A fast way to convert carbon | Microbiome: Low-fibre diet puts gut at risk | Genomics: DNA reveals history of maize | Developmental biology: 'Mini-guts' made with nerves | Ecology: Ants farm plants in Fiji | Genomics: Epidemics marked indigenous DNA
 
 
Nature Outlook: Precision Medicine

Health care that is tailored on the basis of an individual's genes, lifestyle or environment, is not a modern concept. But advances in genetics and the growing availability of health data for researchers and physicians promise to make this new era of medicine more personalized than ever before.

Access the Outlook free online for six months

Sponsored by: Illumina, Inc.
 
 
News in Focus
 
First Middle Eastern X-ray factory readies for action
SESAME project is set to revolutionize science in the region but is strapped for cash.
Elizabeth Gibney
  Immigrant and minority scientists shaken by Trump win
Worries include job prospects, discrimination — and safety.
Heidi Ledford, Sara Reardon, Ramin Skibba
Rock core from dinosaur-killing impact reveals how enormous craters form
Drilling into Mexico's Chicxulub basin also finds shattered rock where underground life could thrive.
Alexandra Witze
  CRISPR gene-editing tested in a person for the first time
The move by Chinese scientists could spark a biomedical duel between China and the United States.
David Cyranoski
Brazil's scientists battle to escape 20-year funding freeze
Cap at current spending levels could spell 'end of science in Brazil', researchers say.
Claudio Angelo
  Geneticists hope to unlock secrets of bats' complex sounds
Project to sequence the DNA of more than 1,000 species seeks to reveal how bats learn to communicate.
Ramin Skibba
Features  
 
 
 
The sparrow with four sexes
Elaina Tuttle spent her life trying to understand the bizarre chromosome evolution of a common bird — until tragedy struck.
Carrie Arnold
Multimedia  
 
 
Nature Podcast: 24 November 2016
This week, tracking whale shark DNA in seawater, the human computers behind early astronomy, and building materials with a microscope.
Nature Extra: Backchat November 2016
Donald Trump's impact on research and climate action, and how Nature should discuss politics.
Correction  
 
 
Correction
 
 
Nature Reviews Cancer Focus on Tumour Metabolism

This Focus explores the dynamic and varied metabolism in tumour cells, discussing the importance of these pathways for many tumorigenic processes, such as tumour progression, survival, growth, epigenetic changes and how these can be translated to the clinic.

Access the Focus free online. 

Produced with support from Agios Pharmaceuticals, Inc.
 
 
Comment
 
Fire up the atom forge
Rethink electron microscopy to build quantum materials from scratch, urge Sergei V. Kalinin, Albina Borisevich and Stephen Jesse.
Sergei V. Kalinin, Albina Borisevich, Stephen Jesse
Print flexible solar cells
Pay more attention to developing thin, mass-produced, affordable photovoltaic devices, urge Yi-Bing Cheng and colleagues.
Yi-Bing Cheng, Alex Pascoe, Fuzhi Huang et al.
Books and Arts  
 
 
 
History: Women who read the stars
Sue Nelson delights in Dava Sobel's account of a rare band of human computers.
Sue Nelson
Politics: Life at the divide
Alison Abbott hails a memoir from Italian senator and biologist Elena Cattaneo, scourge of pseudoscience.
Alison Abbott
Ecology: Winged insights
H. Charles J. Godfray is inspired by the scientific memoir of late island ecologist Ilkka Hanski.
H. Charles J. Godfray
Correspondence  
 
 
 
Trump: China could take lead on climate
David Victor
  Trump: keep climate plans to boost jobs
Jane C. S. Long
Trump: unlikely to deter clean energy
Jessika Trancik
  Trump: threats to space science?
Monica Grady
United Kingdom: Illness should not curtail PhD funding
Edwin S. Dalmaijer, E. A. Claudia Pama, Stella Prins
 
 
 
Research
 
NEW ONLINE  
 
 
 
Astronomy: A black hole changes its feeding habits
In the 1980s, the gas surrounding a black hole in a nearby galaxy began to emit much more radiation than before. This change has unexpectedly reversed in the past five years, questioning our understanding of these extreme phenomena.
Biological rhythms: Wild times
Little is known about the biological rhythms that emerge from social behaviours in the wild. A study of shorebird pairs shows that rhythms of nest-incubation duties are mainly governed by strategies to avoid predators.
Cell biology: Double agents for mitochondrial division
Mitochondrial organelles — the energy powerhouses of the cell — must divide and fuse dynamically to function. It emerges that two distinct dynamin enzymes enable mitochondrial division.
The genomic basis of circadian and circalunar timing adaptations in a midge
Genomic and molecular analyses of Clunio marinus timing strains suggest that modulation of alternative splicing of Ca2+/calmodulin-dependent kinase II represents a mechanism for evolutionary adaptation of circadian timing.
Redefining the invertebrate RNA virosphere
Profiling the total RNA of 220 invertebrate species leads to the discovery of almost 1,500 new species of RNA virus, revealing that the RNA virosphere is much more diverse than was previously thought.
Sub-ice-shelf sediments record history of twentieth-century retreat of Pine Island Glacier
Many glaciers and ice shelves in the West Antarctic Ice Sheet are retreating or thinning rapidly, but the triggering mechanism has been unclear; now, the retreat of Pine Island Glacier is found to have begun in the 1940s following warming El Niño events in the Pacific Ocean, showing that glacial retreat can continue long after an initial push from the climate.
Water balance creates a threshold in soil pH at the global scale
There is an abrupt transition from alkaline to acid soil pH when mean annual precipitation exceeds mean annual potential evapotranspiration, demonstrating that climate creates a nonlinear pattern in soil solution chemistry at the global scale.
Structure of photosystem II and substrate binding at room temperature
The structures of three intermediate states of photosystem II, which is crucial for photosynthesis, have been solved at room temperature, shedding new light on this process.
Unexpected diversity in socially synchronized rhythms of shorebirds
Socially synchronized rhythms in shorebirds were assessed during biparental incubation under natural circumstances and were exceptionally diverse, often not following the 24-h day, whereby risk of predation, not starvation, determined some of the variation in incubation rhythms.
Inhibition of mTOR induces a paused pluripotent state
Inhibition of mechanistic target of rapamycin (mTOR) suspends mouse blastocyst development and the cells remain 'paused' in a reversible pluripotent state, allowing prolonged culture.
Synthetic recording and in situ readout of lineage information in single cells
Corrigendum: The Asian monsoon over the past 640,000 years and ice age terminations
Brief Communications Arising  
 
 
 
Ephrin Bs and canonical Reelin signalling
Theresa Pohlkamp, Lei Xiao, Rukhsana Sultana et al.
Sentürk et al. reply
A. Sentürk, S. Pfennig, A. Weiss et al.
Contesting the massacre at Nataruk
Christopher M. Stojanowski, Andrew C. Seidel, Laura C. Fulginiti et al.
Mirazón Lahr et al. reply
M. Mirazón Lahr, F. Rivera, R. K. Power et al.
News and Views  
 
 
 
DNA repair: Clamping down on copy errors
Neil M. Kad, Bennett Van Houten
Materials science: Polymers make charge flow easy
Antonio Facchetti
Evolution: Insect invasions and natural selection
Amro Zayed
 
Naturejobs Career Guide 2016

Some Asia-Pacific countries are investing heavily in research and development, opening up opportunities for scientists who are willing to relocate to achieve their career goals. This Naturejobs Career Guide provides researchers who are thinking of making the move with the information and advice they need to make the right decisions.

Click here to find out more
Nanoscience: Flexible graphene strengthens friction
Astrid S. de Wijn
 
Cell biology: A mitochondrial brake on vascular repair
Charles E. de Bock, Rick F. Thorne
50 & 100 Years Ago
 
Materials science: Improving the image of nanoparticles
Christopher S. Wood, Molly M. Stevens
Plant science: A war over water when bacteria invade leaves
Gwyn A. Beattie
 
Reviews  
 
 
 
Emergent phenomena induced by spin–orbit coupling at surfaces and interfaces
The interplay between spin–orbit coupling and two-dimensionality has led to the emergence of new phases of matter, such as spin-polarized surface states in topological insulators, interfacial chiral spin interactions, and magnetic skyrmions in thin films, with great potential for spin-based devices.
Anjan Soumyanarayanan, Nicolas Reyren, Albert Fert et al.
Articles  
 
 
 
The mechanism of force transmission at bacterial focal adhesion complexes
The mystery of how bacteria that lack motile structures such as pili or flagella can 'glide' along surfaces is solved by a detailed description of the bacterial focal adhesion complex and its associated protein machinery.
Laura M. Faure, Jean-Bernard Fiche, Leon Espinosa et al.
Developmental mechanisms of stripe patterns in rodents
Alx3-induced modulation of Mitf expression alters melanocyte differentiation and gives rise to the hair colour differences underlying the repeated evolution of dorsal stripes in rodents.
Ricardo Mallarino, Corneliu Henegar, Mercedes Mirasierra et al.
Bacteria establish an aqueous living space in plants crucial for virulence
A combination of high humidity and bacterial effectors, such as Pseudomonas syringae HopM1, creates an aqueous environment in the apoplast of immunodeficient Arabidopsis thaliana that allows non-pathogenic P. syringae strains to become virulent pathogens.
Xiu-Fang Xin, Kinya Nomura, Kyaw Aung et al.
Letters  
 
 
 
Doped polymer semiconductors with ultrahigh and ultralow work functions for ohmic contacts
A general strategy for producing solution-processed doped polymers with the extreme work functions that are required to make good ohmic contacts to semiconductors is demonstrated in high-performance light-emitting diodes, transistors and solar cells.
Cindy G. Tang, Mervin C. Y. Ang, Kim-Kian Choo et al.
The evolving quality of frictional contact with graphene
Atomistic simulations reproduce experimental observations of transient frictional strengthening of graphene on an amorphous silicon substrate, an effect which diminishes as the number of graphene layers increases.
Suzhi Li, Qunyang Li, Robert W. Carpick et al.
Catalytic activation of carbon–carbon bonds in cyclopentanones
In the chemical industry, it is often necessary to activate carbon–carbon bonds in order to synthesize complex organic molecules, but this is challenging when starting with simple five- or six-membered carbon rings; a new method uses a rhodium pre-catalyst and an amino-pyridine co-catalyst, enabling an overall energetically favourable reaction that involves activation of carbon–carbon bonds plus activation of carbon–hydrogen bonds.
Ying Xia, Gang Lu, Peng Liu et al.
Magnetic reversals from planetary dynamo waves
Polarity reversals caused by dynamo waves are demonstrated in a magnetohydrodynamic model that is relevant to planetary cores, suggesting a possible mechanism of geomagnetic reversals.
Andrey Sheyko, Christopher C. Finlay, Andrew Jackson
A cannabinoid link between mitochondria and memory
Cannabinoids affect CB1 receptors on the mitochondrial membranes in the brain, triggering a decrease in downstream cAMP-dependent signalling; this leads to a decrease in brain mitochondrial activity and to cannabinoid-induced amnesia.
Etienne Hebert-Chatelain, Tifany Desprez, Román Serrat et al.
Designer matrices for intestinal stem cell and organoid culture
The authors have designed modular synthetic hydrogel networks for mouse and human intestinal stem cell cultures that support intestinal organoid formation.
Nikolce Gjorevski, Norman Sachs, Andrea Manfrin et al.
Different tissue phagocytes sample apoptotic cells to direct distinct homeostasis programs
Apoptotic intestinal epithelial cells can be sampled by lamina propria phagocytes, leading to distinct phagocyte-type-specific anti-inflammatory gene signatures and dendritic-cell-mediated induction of regulatory T cells.
Ryan J. Cummings, Gaetan Barbet, Gerold Bongers et al.
Macrophages redirect phagocytosis by non-professional phagocytes and influence inflammation
Macrophage-derived insulin-like growth factor enhances the uptake of microvesicles by non-professional phagocytes, such as airway epithelial cells and fibroblasts, thereby dampening tissue inflammation.
Claudia Z. Han, Ignacio J. Juncadella, Jason M. Kinchen et al.
Control of mitochondrial function and cell growth by the atypical cadherin Fat1
Fragments of the atypical cadherin Fat1 accumulate in the mitochondria of vascular smooth muscle cells where they reduce respiration, leading to a regulated proliferative response to arterial injury.
Longyue L. Cao, Dario F. Riascos-Bernal, Prameladevi Chinnasamy et al.
Mechanism of super-assembly of respiratory complexes III and IV
SCAF1 is always required for the interaction between the respiratory chain complexes III and IV, and in animals carrying only the short isoform of SCAF1, the respirasome is absent in most tissues, with the exception of heart and skeletal muscle, where COX7A2 is present instead of SCAF1.
Sara Cogliati, Enrique Calvo, Marta Loureiro et al.
Cascading MutS and MutL sliding clamps control DNA diffusion to activate mismatch repair
MutS and MutL—the highly conserved core proteins responsible for the repair of mismatched DNA—form sequential stable sliding clamps that together modulate one-dimensional diffusion along the DNA and, with MutH, facilitate the search for a distant excision initiation site.
Jiaquan Liu, Jeungphill Hanne, Brooke M. Britton et al.
Genetic and mechanistic diversity of piRNA 3′-end formation
Drosophila have two pathways for PIWI-interacting RNA (piRNA) 3′-end formation—depending on which pathway is used, piRNA biogenesis is directed towards either cytoplasmic or nuclear PIWI protein effectors, which balances post-transcriptional versus transcriptional transposon silencing.
Rippei Hayashi, Jakob Schnabl, Dominik Handler et al.
An oxidative N-demethylase reveals PAS transition from ubiquitous sensor to enzyme
Characterization of the first Per-ARNT-Sim enzyme, a haem-dependent oxidative N-demethylase.
Mary Ortmayer, Pierre Lafite, Binuraj R. K. Menon et al.
CORRIGENDUM  
 
 
 
Corrigendum: Slowly fading super-luminous supernovae that are not pair-instability explosions
M. Nicholl, S. J. Smartt, A. Jerkstrand et al.
 
 
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Careers & Jobs
 
Feature  
 
 
 
Activism: A call to serve
Chris Woolston
Futures  
 
 
Hungry ghosts
Homing signal.
Cassandra Khaw
 
 
 
 
 

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