TABLE OF CONTENTS
|  |  |  | Volume 10, Issue 11 (November 2016) |  | In this issue Mini-Review Original Articles Short Communication | |  |  |  | Advertisement |  | |  |  | Mini-Review | Top |  | Challenges in microbial ecology: building predictive understanding of community function and dynamics OPENStefanie Widder, Rosalind J Allen, Thomas Pfeiffer, Thomas P Curtis, Carsten Wiuf, William T Sloan, Otto X Cordero, Sam P Brown, Babak Momeni, Wenying Shou, Helen Kettle, Harry J Flint, Andreas F Haas, Béatrice Laroche, Jan-Ulrich Kreft, Paul B Rainey, Shiri Freilich, Stefan Schuster, Kim Milferstedt, Jan R van der Meer, Tobias Groβkopf, Jef Huisman, Andrew Free, Cristian Picioreanu, Christopher Quince, Isaac Klapper, Simon Labarthe, Barth F Smets, Harris Wang, Isaac Newton Institute Fellows and Orkun S Soyer ISME J 2016 10: 2557-2568; advance online publication, March 29, 2016; 10.1038/ismej.2016.45 Abstract | Full Text |  | Original Articles | Top |  | Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp.Alejandro Palomo, S Jane Fowler, Arda Gülay, Simon Rasmussen, Thomas Sicheritz-Ponten and Barth F Smets ISME J 2016 10: 2569-2581; advance online publication, April 29, 2016; 10.1038/ismej.2016.63 Abstract | Full Text |  |  |  | Bacterioplankton niche partitioning in the use of phytoplankton-derived dissolved organic carbon: quantity is more important than qualityHugo Sarmento, Cédric Morana and Josep M Gasol ISME J 2016 10: 2582-2592; advance online publication, April 29, 2016; 10.1038/ismej.2016.66 Abstract | Full Text |  |  |  | Microbial regulation of the soil carbon cycle: evidence from gene–enzyme relationshipsPankaj Trivedi, Manuel Delgado-Baquerizo, Chanda Trivedi, Hangwei Hu, Ian C Anderson, Thomas C Jeffries, Jizhong Zhou and Brajesh K Singh ISME J 2016 10: 2593-2604; advance online publication, May 10, 2016; 10.1038/ismej.2016.65 Abstract | Full Text |  |  |  | Contribution of ammonia oxidation to chemoautotrophy in Antarctic coastal waters OPENBradley B Tolar, Meredith J Ross, Natalie J Wallsgrove, Qian Liu, Lihini I Aluwihare, Brian N Popp and James T Hollibaugh ISME J 2016 10: 2605-2619; advance online publication, May 17, 2016; 10.1038/ismej.2016.61 Abstract | Full Text |  |  |  | Exopolysaccharide microchannels direct bacterial motility and organize multicellular behavior OPENJames E Berleman, Marcin Zemla, Jonathan P Remis, Hong Liu, Annie E Davis, Alexandra N Worth, Zachary West, Angela Zhang, Hanwool Park, Elena Bosneaga, Brandon van Leer, Wenting Tsai, David R Zusman and Manfred Auer ISME J 2016 10: 2620-2632; advance online publication, May 6, 2016; 10.1038/ismej.2016.60 Abstract | Full Text |  |  |  | A mobile genetic element profoundly increases heat resistance of bacterial sporesErwin M Berendsen, Jos Boekhorst, Oscar P Kuipers and Marjon H J Wells-Bennik ISME J 2016 10: 2633-2642; advance online publication, April 22, 2016; 10.1038/ismej.2016.59 Abstract | Full Text |  |  |  | Gene expression profiling of microbial activities and interactions in sediments under haloclines of E. Mediterranean deep hypersaline anoxic basinsVirginia P Edgcomb, Maria G Pachiadaki, Paraskevi Mara, Konstantinos A Kormas, Edward R Leadbetter and Joan M Bernhard ISME J 2016 10: 2643-2657; advance online publication, April 19, 2016; 10.1038/ismej.2016.58 Abstract | Full Text |  |  |  | Trait changes induced by species interactions in two phenotypically distinct strains of a marine dinoflagellateSylke Wohlrab, Urban Tillmann, Allan Cembella and Uwe John ISME J 2016 10: 2658-2668; advance online publication, April 19, 2016; 10.1038/ismej.2016.57 Abstract | Full Text |  |  |  | Genomics of a phototrophic nitrite oxidizer: insights into the evolution of photosynthesis and nitrificationJames Hemp, Sebastian Lücker, Joachim Schott, Laura A Pace, Jena E Johnson, Bernhard Schink, Holger Daims and Woodward W Fischer ISME J 2016 10: 2669-2678; advance online publication, April 19, 2016; 10.1038/ismej.2016.56 Abstract | Full Text |  |  |  | Phylogenomic analysis of Candidatus ‘Izimaplasma’ species: free-living representatives from a Tenericutes clade found in methane seepsConnor T Skennerton, Mohamed F Haroon, Ariane Briegel, Jian Shi, Grant J Jensen, Gene W Tyson and Victoria J Orphan ISME J 2016 10: 2679-2692; advance online publication, April 8, 2016; 10.1038/ismej.2016.55 Abstract | Full Text |  |  |  | Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals OPENNadine M Boulotte, Steven J Dalton, Andrew G Carroll, Peter L Harrison, Hollie M Putnam, Lesa M Peplow and Madeleine JH van Oppen ISME J 2016 10: 2693-2701; advance online publication, April 19, 2016; 10.1038/ismej.2016.54 Abstract | Full Text |  |  |  | RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria OPENKelly C Wrighton, Cindy J Castelle, Vanessa A Varaljay, Sriram Satagopan, Christopher T Brown, Michael J Wilkins, Brian C Thomas, Itai Sharon, Kenneth H Williams, F Robert Tabita and Jillian F Banfield ISME J 2016 10: 2702-2714; advance online publication, May 3, 2016; 10.1038/ismej.2016.53 Abstract | Full Text |  |  |  | Interactions between growth-dependent changes in cell size, nutrient supply and cellular elemental stoichiometry of marine SynechococcusNathan S Garcia, Juan A Bonachela and Adam C Martiny ISME J 2016 10: 2715-2724; advance online publication, April 8, 2016; 10.1038/ismej.2016.50 Abstract | Full Text |  |  |  | Microbial diversity arising from thermodynamic constraints OPENTobias Großkopf and Orkun S Soyer ISME J 2016 10: 2725-2733; advance online publication, April 1, 2016; 10.1038/ismej.2016.49 Abstract | Full Text |  |  |  | A new cell morphotype among methane oxidizers: a spiral-shaped obligately microaerophilic methanotroph from northern low-oxygen environmentsOlga V Danilova, Natalia E Suzina, Jodie Van De Kamp, Mette M Svenning, Levente Bodrossy and Svetlana N Dedysh ISME J 2016 10: 2734-2743; advance online publication, April 8, 2016; 10.1038/ismej.2016.48 Abstract | Full Text |  |  |  | Genetic and life-history traits associated with the distribution of prophages in bacteria OPENMarie Touchon, Aude Bernheim and Eduardo PC Rocha ISME J 2016 10: 2744-2754; advance online publication, March 25, 2016; 10.1038/ismej.2016.47 Abstract | Full Text |  |  |  | Genetic diversity affects ecological performance and stress response of marine diatom populationsConny O Sjöqvist and Anke Kremp ISME J 2016 10: 2755-2766; advance online publication, April 5, 2016; 10.1038/ismej.2016.44 Abstract | Full Text |  | Short Communication | Top |  | Is chloroplastic class IIA aldolase a marine enzyme?Hitoshi Miyasaka, Takeru Ogata, Satoshi Tanaka, Takeshi Ohama, Sanae Kano, Fujiwara Kazuhiro, Shuhei Hayashi, Shinjiro Yamamoto, Hiro Takahashi, Hideyuki Matsuura and Kazumasa Hirata ISME J 2016 10: 2767-2772; advance online publication, April 8, 2016; 10.1038/ismej.2016.52 Abstract | Full Text |  |  |  |  |  |  |  |  |  |  | Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. 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