Wednesday, October 12, 2016

Nature contents: 13 October 2016

If you are unable to see the message below, click here to view.
 
  journal cover  
Nature Volume 538 Issue 7624
 
This Week  
 
 
Editorials  
 
 
 
Healing the traumatized minds of refugees
Host countries need to deal with the raised levels of mental-health disorders in migrants if they expect them to integrate well, and that could mean benefits for psychological care in rich countries too.
Rethink the links between genes and disease
The ExAC database has shown that many mutations thought to be harmful are benign.
Scientific buzzwords obscure meaning
'Nexus' is enjoying new-found popularity. But what does it actually mean?
 
 
Prize money 20,000 EUR
 
Eppendorf Award 2017: Apply now online!
 
Entry deadline: January 15, 2017
World View  
 
 
 
It's time to get real about conservation
To protect endangered species from extinction, the ecological community must become more politically involved, argues Aaron M. Ellison.
 
Seven Days  
 
 
 
Cholera fears, Brexit experts and LIGO in India
The week in science: 7–13 October 2016.
Research Highlights  
 
 
 
Climate: Megadroughts loom large | Microbiology: Protozoan protects the gut | Quantum communication: Quantum secret kept for a day | Cognition: Human-like ape expectations | Ecology: Warmer forests store less carbon | Marine biology: Diatoms sink in fits and starts | Astronomy: Strange fading star probed | Microbiology: Gut bacteria help cancer drug | Materials: Supercapacitor made from MOF | Planetary science: Ocean on another of Saturn's moons
 
 

Eppendorf Award Winner 2016
 
In 2016, the prize was awarded to Prof. Adrian Liston, Group leader at VIB Translational Immunology Lab, University of Leuven, Belgium. More about Adrian Liston's research.
 
If you want to apply for the Eppendorf Award 2017, click here   
 
 
News in Focus
 
Brexit government's anti-immigration stance spooks UK scientists
Plans to restrict freedom of movement intensify researchers' fears over June vote.
Daniel Cressey
  South Africa plans health study to track half a million people
Network would be Africa's largest demographics project if it can sustain long-term funding.
Linda Nordling
NASA rethinks approach to Mars exploration
Agency looks to time-allocation model in an era of shifting commercial and international interests.
Alexandra Witze
  Safety concerns blight promising cancer therapy
As the first T-cell therapies for tumours near US approval, researchers race to engineer less-toxic alternatives.
Heidi Ledford
Where Nobel winners get their start
Undergraduates from small, elite institutions have the best chance of winning a Nobel prize.
Tom Clynes
  World's tiniest machines win chemistry Nobel
Jean-Pierre Sauvage, Fraser Stoddart and Bernard Feringa share 2016 award.
Richard Van Noorden, Davide Castelvecchi
Features  
 
 
 
A radical revision of human genetics
Why many 'deadly' gene mutations are turning out to be harmless.
Erika Check Hayden
The mental-health crisis among migrants
The refugees and migrants surging into Europe are suffering very high levels of psychiatric disorders. Researchers are struggling to help.
Alison Abbott
Multimedia  
 
 
Nature Podcast: 13 October 2016
This week, refugee mental health, better neural nets, and changing attitudes to female genital cutting.
Nature Extra: Nobel news
Science gets glitzy in October each year as the Nobel Prizes are awarded. Find out who took home the prizes for Medicine or Physiology, Physics and Chemistry.
Correction  
 
 
Correction
Corrections
Corrections
 
 


SICHUAN UNIVERSITY

A 120-year journey to education and research excellence

Publishing Date: Sept 22nd, 2016

AVAILABLE FREE ONLINE

Access now!
 
 
Comment
 
Genomics is failing on diversity
An analysis by Alice B. Popejoy and Stephanie M. Fullerton indicates that some populations are still being left behind on the road to precision medicine.
Alice B. Popejoy, Stephanie M. Fullerton
Scientists must have a say in the future of cities
A United Nations conference seeks urban sustainability. But the agenda will fail without input from researchers, warn Timon McPhearson and colleagues.
Timon McPhearson, Susan Parnell, David Simon et al.
Books and Arts  
 
 
 
Physics: Fallible pontiff of physics
Graham Farmelo assesses a biography of star theorist-experimentalist Enrico Fermi.
Graham Farmelo
Books in brief
Barbara Kiser reviews five of the week's best science picks.
Barbara Kiser
History: Einstein the statesman
Nancy Thorndike Greenspan enjoys a study of the physicist as engaged public figure.
Nancy Thorndike Greenspan
Correspondence  
 
 
 
Misconduct: Don't let witch hunts taint investigations
Kenneth Pimple
  Nature Index: University on the rise without PhD students
Steve Oppenheimer
Policy: Hasten end of dated fossil-fuel subsidies
Tara Martin
  Aquaculture: Are farmed fish just for the wealthy?
Ben Belton, Simon R. Bush, David C. Little
Aquaculture: Are farmed fish just for the wealthy? Golden et al. reply
Harvard T. H. Chan
 
Obituary  
 
 
 
Roger Yonchien Tsien (1952–2016)
Creator of a rainbow of fluorescent probes that lit up biology.
Timothy J. Rink, Louis Y. Tsien, Richard W. Tsien
 
 
Specials
 
TECHNOLOGY FEATURE  
 
 
 
The dark side of the human genome
Scientists are uncovering the hidden switches in our genome that dial gene expression up and down, but much work lies ahead to peel back the many layers of regulation.
Kelly Rae Chi
 
 
Research
 
NEW ONLINE  
 
 
 
Synthetic biology: Precision timing in a cell
A 16-year-old synthetic genetic circuit that produces gene-expression oscillations in bacterial cells has been given an upgrade, making it an exceptionally precise biological clock.
Artificial intelligence: Deep neural reasoning
The human brain can solve highly abstract reasoning problems using a neural network that is entirely physical. The underlying mechanisms are only partially understood, but an artificial network provides valuable insight.
Palaeontology: Ancient avian aria from Antarctica
A discovery of the sound-producing vocal organ known as the syrinx in a bird fossil from the end of the 'age of dinosaurs' highlights the anatomical basis for myriad aspects of avian social and behavioural evolution.
Drug discovery: Chemical diversity targets malaria
A molecule selected from a library of compounds that have structures similar to natural products targets several stages of the malarial parasite's life cycle, offering single-dose treatment of the disease in mouse models.
Social science: Female genital cutting under the spotlight
Variations in opinion between members of a community can be exploited to facilitate desirable changes in attitude, as exemplified by films that explore different beliefs about female genital cutting.
Hybrid computing using a neural network with dynamic external memory
A 'differentiable neural computer' is introduced that combines the learning capabilities of a neural network with an external memory analogous to the random-access memory in a conventional computer.
Arginine phosphorylation marks proteins for degradation by a Clp protease
Upper-mantle water stratification inferred from observations of the 2012 Indian Ocean earthquake
Postseismic recordings of the moment magnitude 8.6 Indian Ocean earthquake of 2012, combined with the characteristics of olivine creep, provide constraints on the water content of the asthenosphere.
Asthenosphere rheology inferred from observations of the 2012 Indian Ocean earthquake
Analysis of the postseismic deformation of the moment magnitude 8.6 Indian Ocean earthquake in 2012 reveals that the asthenospheric layer must be thin and of low viscosity, constraining the structure of oceanic upper-mantle rheology.
Amide-directed photoredox-catalysed C–C bond formation at unactivated sp3 C–H bonds
The formation of carbon–carbon bonds is achieved via directed cleavage of traditionally non-reactive carbon–hydrogen bonds and their subsequent coupling with readily available alkenes.
Catalytic alkylation of remote C–H bonds enabled by proton-coupled electron transfer
Catalytic alkylation of C–H bonds is achieved via homolysis of N–H bonds of N-alkyl amides through proton-coupled electron transfer.
Fetal liver endothelium regulates the seeding of tissue-resident macrophages
PLVAP selectively controls the seeding of fetal liver monocyte-derived tissue-resident macrophages, seemingly by interacting with chemotactic and adhesive molecules at the diaphragms of liver sinusoidal endothelium.
Allogeneic transplantation of iPS cell-derived cardiomyocytes regenerates primate hearts
Allogenic induced pluripotent stem cell-derived cardiomyocytes transplanted directly into infarcted cynomolgus monkey hearts show electrical coupling with host cardiomyocytes improve cardiac contractile function after mild immunosuppression.
Cortico-fugal output from visual cortex promotes plasticity of innate motor behaviour
Projections from the mouse visual cortex to the brainstem accessory optic system promote the adaptive plasticity of the optokinetic reflex, which stabilizes images on the retina when an animal is moving.
A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns
Pancreatic cancer is not caused by a specific series of genetic alterations that occur sequentially but by one, or few, catastrophic events that result in simultaneous oncogenic genetic rearrangements, giving rise to highly aggressive tumours.
Molecular basis of Lys11-polyubiquitin specificity in the deubiquitinase Cezanne
The structures of the deubiquitinating enzyme Cezanne alone or in complex with its substrate or product are solved, showing how Cezanne specifically targets Lys11-linked polyubiquitin.
Synchronous long-term oscillations in a synthetic gene circuit
The first synthetic genetic oscillator or 'repressilator' is simplified using insights from stochastic theory, thus achieving remarkably precise and robust oscillations and informing current debates about the next generation of synthetic circuits and their potential applications in cell-based therapies.
Fossil evidence of the avian vocal organ from the Mesozoic
Birds make sound in the syrinx, a unique vocal organ situated deep in the chest, but little is known about the evolution of this structure; a fossilized Cretaceous age syrinx from Antarctica is described from a species that might have been capable of making a goose-like honking sound.
Changing cultural attitudes towards female genital cutting
Entertaining movies addressing both individual values and marriageability can provide a way to change cultural attitudes towards female genital cutting within certain cultures.
Variability in plant nutrients reduces insect herbivore performance
News and Views  
 
 
 
Earth science: Megafloods downsized
J. Taylor Perron, Jeremy G. Venditti
Ageing: Measuring our narrow strip of life
S. Jay Olshansky
Planetary science: Moon churn
Andrew Mitchinson
 
Advertising.
In retrospect: Fifty years of C4 photosynthesis
Julian M. Hibberd, Robert T. Furbank
 
Population genetics: A map of human wanderlust
Serena Tucci, Joshua M. Akey
Animal behaviour: Lethal violence deep in the human lineage
Mark Pagel
 
Reviews  
 
 
 
In vitro and ex vivo strategies for intracellular delivery
Intracellular delivery methods, which are critical to both fundamental research applications and cell-based therapies, are reviewed, concentrating on membrane-disruption-based methods and the use of nanotechnology, microfluidics and laboratory-on-chip technology.
Martin P. Stewart, Armon Sharei, Xiaoyun Ding et al.
The evolution of Ebola virus: Insights from the 2013–2016 epidemic
A comprehensive review of how analysis of genome sequences provided insights into the origins, evolution and spread of Ebola virus during the 2013–2016 epidemic in West Africa.
Edward C. Holmes, Gytis Dudas, Andrew Rambaut et al.
Articles  
 
 
 
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations
Deep whole-genome sequencing of 300 individuals from 142 diverse populations provides insights into key population genetic parameters, shows that all modern human ancestry outside of Africa including in Australasians is consistent with descending from a single founding population, and suggests a higher rate of accumulation of mutations in non-Africans compared to Africans since divergence.
Swapan Mallick, Heng Li, Mark Lipson et al.
A genomic history of Aboriginal Australia
Whole-genome sequence data for 108 individuals representing 28 language groups across Australia and five language groups for Papua New Guinea suggests that Aboriginal Australians and Papuans diverged from Eurasian populations approximately 60–100 thousand years ago, following a single out-of-Africa dispersal and subsequent admixture with archaic populations.
Anna-Sapfo Malaspinas, Michael C. Westaway, Craig Muller et al.
Letters  
 
 
 
Formation of new chromatin domains determines pathogenicity of genomic duplications
Genomic duplications in the SOX9 region are associated with human disease phenotypes; a study using human cells and mouse models reveals that the duplications can cause the formation of new higher-order chromatin structures called topologically associated domains (TADs) thereby resulting in changes in gene expression.
Martin Franke, Daniel M. Ibrahim, Guillaume Andrey et al.
Evidence for a limit to human lifespan
Demographic analysis of life expectancy and maximum reported age at death provides evidence that human lifespan has reached its natural limit.
Xiao Dong, Brandon Milholland, Jan Vijg
Genomic analyses inform on migration events during the peopling of Eurasia
Whole-genome sequencing of individuals from 125 populations provides insight into patterns of genetic diversity, natural selection and human demographic history during the peopling of Eurasia and finds evidence for genetic vestiges of an early expansion of modern humans out of Africa in Papuans.
Luca Pagani, Daniel John Lawson, Evelyn Jagoda et al.
A cholinergic basal forebrain feeding circuit modulates appetite suppression
A mouse study reveals that acetylcholine signalling networks have a role in the regulation of body weight homeostasis, with increased activity of cholinergic neurons decreasing food consumption through downstream hypothalamic targets.
Alexander M. Herman, Joshua Ortiz-Guzman, Mikhail Kochukov et al.
Genome-wide associations for birth weight and correlations with adult disease
Multi-ancestry genome-wide association analyses for birth weight in 153,781 individuals identified 60 genomic loci in which birth weight and fetal genotype were associated and found an inverse genetic correlation between birth weight and cardiometabolic risk.
Momoko Horikoshi, Robin N. Beaumont, Felix R. Day et al.
The phylogenetic roots of human lethal violence
The percentage of human deaths caused by interpersonal violence reflects our membership of a particularly violent clade of mammals, although changes in socio-political organization have led to marked variations in this proportion.
José María Gómez, Miguel Verdú, Adela González-Megías et al.
Enhanced flexoelectric-like response in oxide semiconductors
Semiconducting single crystals of doped barium titanate and titanium dioxide exhibit a flexoelectric-like response upon bending that is much larger than in their undoped, insulating counterparts, reaching unprecedentedly large effective flexoelectric coefficients.
Jackeline Narvaez, Fabian Vasquez-Sancho, Gustau Catalan
Tissue-specific mutation accumulation in human adult stem cells during life
Stem cells of the liver, colon and small intestine gradually accumulate mutations throughout life at a similar rate even though cancer incidence varies greatly among these tissues.
Francis Blokzijl, Joep de Ligt, Myrthe Jager et al.
Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection
The CRISPR-associated bacterial enzyme C2c2 is shown to contain two separable, distinct sites for the highly sensitive detection and cleavage of single-stranded RNA.
Alexandra East-Seletsky, Mitchell R. O'Connell, Spencer C. Knight et al.
De novo assembly and phasing of a Korean human genome OPEN
De novo assembly and phasing of the genome of an individual from Korea using a combination of different sequencing approaches provides a useful population-specific reference genome and represents the most contiguous human genome assembly so far.
Jeong-Sun Seo, Arang Rhie, Junsoo Kim et al.
Molecular transport through capillaries made with atomic-scale precision
Nanometre-scale graphitic capillaries with atomically flat walls are engineered and studied, revealing unexpectedly fast transport of liquid water through channels that accommodate only a few layers of water.
B. Radha, A. Esfandiar, F. C. Wang et al.
Quantifying crater production and regolith overturn on the Moon with temporal imaging
High-resolution 'before and after' imaging of the Moon is used to quantify the rate of crater production and provide insights into the cratering process.
Emerson J. Speyerer, Reinhold Z. Povilaitis, Mark S. Robinson et al.
Evolution of global temperature over the past two million years
Reconstruction of global average surface temperature for the past two million years shows continuous cooling until about 1.2 million years ago, followed by a general flattening, with close coupling of global temperature and atmospheric greenhouse gas concentrations over the past 800,000 years.
Carolyn W. Snyder
Progressive incision of the Channeled Scablands by outburst floods
Simulations of water flow and erosion in Moses Coulee suggest that the floods that carved this canyon only partially filled it, implying much lower flood discharges than previously thought.
Isaac J. Larsen, Michael P. Lamb
Corrigenda  
 
 
 
Corrigendum: Concerted nucleophilic aromatic substitution with 19F and 18F
Constanze N. Neumann, Jacob M. Hooker, Tobias Ritter
Corrigendum: Imbalance between pSmad3 and Notch induces CDK inhibitors in old muscle stem cells
Morgan E. Carlson, Michael Hsu, Irina M. Conboy
Corrigendum: Distinct bone marrow blood vessels differentially regulate haematopoiesis
Tomer Itkin, Shiri Gur-Cohen, Joel A. Spencer et al.
 
 

nature.com webcasts

Springer Nature presents a custom webcast on: uDISCO for whole organs and organisms: A new way of large sample imaging

Date: Thursday October 27, 2016
Time: 8AM PDT, 11AM EDT, 4PM BST, 5PM CEST

Register for FREE

Sponsored by:
Bitplane
LaVision Biotech
Andor Technology
 
 
Careers & Jobs
 
Feature  
 
 
 
Volunteering: Pro bono science
Amber Dance
Q&AS  
 
 
 
Trade talk: Lab whiz
Monya Baker
Clarification
Futures  
 
 
Galactic empire management consulting: Lessons learnt
Prepare for excellence!
Aidan Doyle
 
 
 
 
 

naturejobs.com

naturejobs.com Science jobs of the week

 
 
 

Postdoctoral Associate

 
 

Sanford Burnham Prebys Medical Discovery Institute 

 
 
 
 
 

Four year PhD Prize Studentships

 
 

University of Oxford 

 
 
 
 
 

Senior Research Associate

 
 

University of Bristol 

 
 
 
 
 

Research Fellow / PhD Position

 
 

TU Dresden 

 
 
 
 

No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. Keep up-to-date with the latest sector trends, vote in our reader poll and sign-up to receive the monthly Naturejobs newsletter.

 
 
 
 
 
 
 

natureevents.com - The premier science events website

natureevents directory featured events

 
 
 
 

Evolution and functional biology of neuropeptide signalling: from genomes to behaviour

 
 

14 March 2017 Chicheley, UK

 
 
 
 

Natureevents Directory is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. Featured across Nature Publishing Group journals and centrally at natureevents.com it is an essential reference guide to scientific events worldwide.

 
 
 
 
 
Your email address is in the Nature mailing list.

You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/nams/svc/myaccount (You will need to log in to be recognised as a nature.com registrant).

 
 
For further technical assistance, please contact our registration department at registration@nature.com

For print subscription enquiries, please contact our subscription department at subscriptions@nature.com

For other enquiries, please contact feedback@nature.com

Nature Publishing Group | One New York Plaza, Suite 4500 | New York | NY 10004-1562 | USA

Nature Publishing Group's offices:

Principal offices: London - New York - Tokyo

Worldwide offices: Basingstoke - Beijing - Boston - Buenos Aires - Delhi - Heidelberg - Hong Kong - Madrid - Melbourne - Munich - Paris - San Francisco - Seoul - Shanghai - Washington DC - Sydney

Macmillan Publishers Limited is a company incorporated in England and Wales under company number 785998 and whose registered office is located at The Campus, 4 Crinan Street, London, N1 9XW.

© 2016 Macmillan Publishers Limited. All Rights Reserved.

 

No comments: